IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3584	 52.38	0	3906352..3906981	-	209	83646497	-	HCH_03775	-	Rhs family protein
3585	 60.22	+1	3906958..3907143	+	61	83646498	-	HCH_03776	-	hypothetical protein
3586	 43.79	-1	3907251..3908666	-	471	83646499	-	HCH_03777	-	Rhs family protein
3587	 32.71	-2	3909174..3909494	-	106	83646500	-	HCH_03778	-	hypothetical protein
3588	 40.67	-2	3910077..3910376	-	99	83646501	-	HCH_03779	-	hypothetical protein
3589	 59.34	+1	3910488..3911006	-	172	83646502	-	HCH_03780	-	transposase
3590	 55.40	0	3911433..3911849	-	138	83646503	-	HCH_03781	-	Rhs family protein
3591	 55.90	0	3911823..3912017	+	64	83646504	-	HCH_03782	-	hypothetical protein
3592	 33.95	-2	3912050..3912373	-	107	83646505	-	HCH_03783	-	hypothetical protein
3593	 56.90	0	3912384..3916622	-	1412	83646506	-	HCH_03784	-	Rhs family protein
3594	 48.16	0	3916889..3917866	-	325	83646507	-	HCH_03785	-	Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
3595	 48.89	0	3917842..3918246	-	134	83646508	-	HCH_03786	-	hypothetical protein
3596	 57.68	0	3918406..3919551	-	381	83646509	-	HCH_03787	-	oxidoreductase
3597	 61.24	+1	3919862..3923032	-	1056	83646510	-	HCH_03788	-	cation/multidrug efflux pump
3598	 63.42	+1	3923042..3924181	-	379	83646511	-	HCH_03789	-	membrane-fusion protein
3599	 61.22	+1	3924448..3925512	+	354	83646512	-	HCH_03790	-	iron-enterobactin transporter periplasmic binding protein
3600	 62.47	+1	3925597..3926883	-	428	83646513	-	HCH_03791	-	enterobactin exporter EntS
3601	 63.52	+1	3927147..3928067	+	306	83646514	-	HCH_03792	-	iron-enterobactin transporter membrane protein
3602	 63.33	+1	3928064..3929113	+	349	83646515	-	HCH_03793	-	iron-enterobactin transporter permease
3603	 60.56	+1	3929110..3929994	+	294	83646516	-	HCH_03795	-	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase components
3604	 52.86	0	3929939..3930619	-	226	83646517	-	HCH_03794	-	glutathione S-transferase
3605	 55.39	0	3930621..3931019	-	132	83646518	-	HCH_03796	-	hypothetical protein
3606	 55.36	0	3931121..3931987	+	288	83646519	-	HCH_03797	-	transcriptional regulator
3607	 47.06	-1	3931956..3932057	+	33	83646520	-	HCH_03799	-	hypothetical protein
3608	 48.61	0	3932050..3932697	-	215	83646521	-	HCH_03798	-	endonuclease/exonuclease/phosphatase family protein
3609	 51.33	0	3933001..3933150	-	49	83646522	-	HCH_03800	-	hypothetical protein
3610	 49.19	0	3933147..3933455	-	102	83646523	-	HCH_03801	-	hypothetical protein
3611	 52.54	0	3933355..3933807	+	150	83646524	-	HCH_03802	-	hypothetical protein
3612	 51.30	0	3934239..3939476	+	1745	83646525	-	HCH_03804	-	helicase family protein
3613	 54.75	0	3939473..3942316	+	947	83646526	-	HCH_03805	-	SNF2 family DNA/RNA helicase
3614	 46.50	-1	3942388..3946632	+	1414	83646527	-	HCH_03806	-	Type II restriction enzyme, methylase subunit
3615	 43.53	-1	3946977..3947378	+	133	83646528	-	HCH_03807	-	hypothetical protein
3616	 54.02	0	3947599..3947859	+	86	83646529	-	HCH_03808	-	hypothetical protein
3617	 57.02	0	3947856..3947969	-	37	83646530	-	HCH_03809	-	hypothetical protein
3618	 45.49	-1	3948144..3948398	-	84	83646531	-	HCH_03810	-	hypothetical protein
3619	 46.81	-1	3948685..3949233	+	182	83646532	-	HCH_03811	-	hypothetical protein
3620	 46.30	-1	3949230..3949499	+	89	83646533	-	HCH_03812	-	hypothetical protein
3621	 39.90	-2	3949560..3949940	+	126	83646534	-	HCH_03813	-	hypothetical protein
3622	 56.94	0	3950251..3951237	-	328	83646535	-	HCH_03814	-	dienelactone hydrolase
3623	 44.62	-1	3951638..3952213	+	191	83646536	-	HCH_03815	-	hypothetical protein
3624	 38.53	-2	3952673..3953095	-	140	83646537	-	HCH_10014	-	putative toxin YafO
3625	 33.86	-2	3953095..3953283	-	62	83646538	-	HCH_03816	-	hypothetical protein
3626	 37.07	-2	3953265..3953585	-	106	83646539	-	HCH_03817	-	hypothetical protein
3627	 63.26	+1	3953985..3962546	-	2853	83646540	-	HCH_03818	-	non-ribosomal peptide synthetase modules and related protein
3628	 57.21	0	3962785..3963006	-	73	83646541	-	HCH_03820	-	hypothetical protein
3629	 64.02	+1	3963060..3964496	-	478	83646542	-	HCH_03821	-	enterobactin/ferric enterobactin esterase
3630	 59.62	+1	3964918..3967032	+	704	83646543	-	HCH_03822	-	Outer membrane receptor protein, mostly Fe transport
3631	 48.04	0	3967267..3967368	+	33	83646544	-	HCH_03823	-	hypothetical protein
3632	 49.32	0	3967758..3968195	-	145	83646545	-	HCH_03824	-	hypothetical protein
3633	 53.93	0	3968202..3968672	-	156	83646546	-	HCH_03825	-	NTP pyrophosphohydrolase including oxidative damage repair enzyme
3634	 53.46	0	3968755..3969231	-	158	83646547	-	HCH_03827	-	NTP pyrophosphohydrolase including oxidative damage repair enzyme
3635	 50.83	0	3969254..3969613	-	119	83646548	-	HCH_03828	-	lactoylglutathione lyase
3636	 60.91	+1	3969977..3970549	-	190	83646549	-	HCH_03829	-	nicotinamidase-like amidase
3637	 62.63	+1	3970659..3971549	+	296	83646550	-	HCH_03832	-	transcriptional regulator
3638	 59.85	+1	3971682..3971945	+	87	83646551	feoA1	HCH_03833	-	Fe2+ transport system protein A
3639	 55.27	0	3971962..3972198	+	78	83646552	feoA2	HCH_03834	-	Fe2+ transport system protein A
3640	 60.55	+1	3972230..3974614	+	794	83646553	feoB	HCH_03835	-	ferrous iron transport protein B
3641	 54.85	0	3974611..3974847	+	78	83646554	-	HCH_03836	-	hypothetical protein
3642	 55.96	0	3974851..3976017	-	388	83646555	-	HCH_03837	-	Fatty acid desaturase
3643	 58.01	0	3976053..3977207	-	384	83646556	-	HCH_03838	-	flavodoxin reductase (ferredoxin-NADPH reductase) family protein 1
3644	 53.20	0	3977299..3977892	-	197	83646557	-	HCH_03839	-	hypothetical protein
3645	 53.37	0	3978188..3978766	-	192	83646558	-	HCH_03840	-	phosphoribosyltransferase
3646	 51.74	0	3978952..3979239	-	95	83646559	-	HCH_03841	-	hypothetical protein
3647	 39.78	-2	3979283..3979639	-	118	83646560	-	HCH_03842	-	hypothetical protein
3648	 34.44	-2	3979800..3980069	-	89	83646561	-	HCH_03843	-	hypothetical protein
3649	 42.64	-1	3980439..3981158	-	239	83646562	-	HCH_03844	-	hypothetical protein
3650	 55.50	0	3981486..3984764	-	1092	83646563	-	HCH_03845	-	FOG EAL domain-containing protein
3651	 61.81	+1	3984772..3985821	-	349	83646564	-	HCH_03846	-	chemotaxis response regulator
3652	 59.78	+1	3985876..3988299	-	807	83646565	-	HCH_03847	-	chemotaxis protein histidine kinase-like kinase
3653	 57.10	0	3988478..3990223	-	581	83646566	-	HCH_03848	-	methyl-accepting chemotaxis protein
3654	 57.21	0	3990227..3990829	-	200	83646567	-	HCH_03849	-	chemotaxis signal transduction protein
3655	 60.15	+1	3990880..3992475	-	531	83646568	-	HCH_03850	-	methylase of chemotaxis methyl-accepting protein
3656	 59.87	+1	3992450..3992920	-	156	83646569	-	HCH_03851	-	chemotaxis signal transduction protein
3657	 56.11	0	3993187..3993792	-	201	83646570	-	HCH_03852	-	phosphatase
3658	 52.85	0	3993847..3994179	-	110	83646571	-	HCH_03853	-	hypothetical protein
3659	 58.33	0	3994218..3995633	-	471	83646572	-	HCH_03855	-	GTPase
3660	 60.44	+1	3995626..3997071	-	481	83646573	-	HCH_03856	-	hypothetical protein
3661	 54.52	0	3997474..3998346	+	290	83646574	-	HCH_03857	-	hypothetical protein
3662	 61.36	+1	3998343..3999473	-	376	83646575	gcvT	HCH_03858	-	glycine cleavage system T protein
3663	 59.86	+1	3999563..4000942	-	459	83646576	sdaA	HCH_03859	-	L-serine ammonia-lyase
3664	 57.61	0	4001017..4002297	-	426	83646577	-	HCH_03860	-	glycine/serine hydroxymethyltransferase
3665	 59.63	+1	4002370..4005252	-	960	83646578	gcvP	HCH_03861	-	glycine dehydrogenase
3666	 53.87	0	4005257..4005631	-	124	83646579	gcvH1	HCH_03862	-	glycine cleavage system H protein
3667	 59.26	+1	4005832..4006722	+	296	83646580	-	HCH_03863	-	transcriptional regulator
3668	 60.38	+1	4006855..4007427	+	190	83646581	-	HCH_03864	-	hypothetical protein
3669	 55.47	0	4007614..4010355	-	913	83646582	-	HCH_03865	-	FOG EAL domain-containing protein
3670	 54.39	0	4010629..4011255	+	208	83646583	-	HCH_03866	-	hypothetical protein
3671	 56.42	0	4011281..4013506	-	741	83646584	-	HCH_03867	-	TPR repeat-containing protein
3672	 43.48	-1	4013575..4013712	+	45	83646585	-	HCH_03868	-	hypothetical protein
3673	 58.66	0	4013918..4015390	+	490	83646586	-	HCH_03869	-	hypothetical protein
3674	 57.08	0	4015434..4016633	+	399	83646587	-	HCH_03870	-	hypothetical protein
3675	 56.57	0	4016751..4017800	-	349	83646588	-	HCH_03871	-	AraC-type DNA-binding domain-containing protein
3676	 42.63	-1	4018074..4018385	-	103	83646589	-	HCH_03872	-	hypothetical protein
3677	 56.07	0	4018575..4020206	+	543	83646590	-	HCH_03873	-	ABC transporter ATPase
3678	 54.12	0	4020275..4021039	-	254	83646591	-	HCH_03874	-	SAM-dependent methyltransferase
3679	 53.04	0	4021089..4021499	+	136	83646592	-	HCH_03875	-	hypothetical protein
3680	 54.30	0	4021674..4023137	+	487	83646593	-	HCH_03876	-	hypothetical protein
3681	 39.68	-2	4023276..4023401	-	41	83646594	-	HCH_03877	-	hypothetical protein
3682	 52.65	0	4023508..4024092	+	194	83646595	-	HCH_03878	-	hypothetical protein
3683	 54.49	0	4024259..4024759	-	166	83646596	-	HCH_03879	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.