IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
311	 55.49	0	340343..341290	-	315	83643224	-	HCH_00322	-	NADPH:quinone reductase and related Zn-dependent oxidoreductase
312	 54.01	0	341692..342639	+	315	83643225	-	HCH_00323	-	hypothetical protein
313	 53.95	0	342649..342939	-	96	83643226	-	HCH_00324	-	hypothetical protein
314	 55.34	0	343235..345202	+	655	83643227	-	HCH_00325	-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system
315	 55.08	0	345207..346595	+	462	83643228	-	HCH_00326	-	sigma 54-dependent transcriptional activator
316	 52.94	0	346644..347612	+	322	83643229	-	HCH_00327	-	aminopeptidase
317	 44.44	-1	347807..348220	+	137	83643230	-	HCH_00328	-	hypothetical protein
318	 46.87	-1	348496..348990	+	164	83643231	-	HCH_00329	-	hypothetical protein
319	 58.11	0	349080..349991	-	303	83643232	-	HCH_00330	-	permease
320	 54.76	0	350205..351749	+	514	83643233	-	HCH_00332	-	glutamate synthase domain-containing 2
321	 59.37	+1	351732..352046	-	104	83643234	-	HCH_00331	-	hypothetical protein
322	 53.79	0	352265..352831	-	188	83643235	-	HCH_00333	-	hypothetical protein
323	 50.51	0	352875..352973	-	32	83643236	-	HCH_00334	-	hypothetical protein
324	 55.63	0	353048..353998	+	316	83643237	-	HCH_00335	-	Fatty-acid desaturase
325	 55.95	0	353995..355254	+	419	83643238	-	HCH_00336	-	NAD/FAD-binding protein
326	 54.97	0	355238..356032	+	264	83643239	-	HCH_00337	-	hypothetical protein
327	 56.66	0	356077..357315	+	412	83643240	-	HCH_00338	-	cyclopropane fatty acid synthase -like protein
328	 59.10	+1	357306..358085	+	259	83643241	-	HCH_00339	-	hypothetical protein
329	 55.92	0	358082..359095	+	337	83643242	cfa	HCH_00340	-	cyclopropane fatty acid synthase -like protein
330	 40.38	-2	359319..359474	+	51	83643243	-	HCH_00341	-	hypothetical protein
331	 51.73	0	359628..360551	+	307	83643244	-	HCH_00342	-	hypothetical protein
332	 51.52	0	360751..361179	+	142	83643245	-	HCH_00343	-	hypothetical protein
333	 54.85	0	361185..363350	-	721	83643246	-	HCH_00344	-	signal transduction protein
334	 56.47	0	363579..364775	-	398	83643247	lamB	HCH_00345	-	maltoporin
335	 55.63	0	365104..366036	-	310	83643248	-	HCH_00346	-	DNA-binding transcriptional regulator HexR
336	 56.03	0	366227..367711	+	494	83643249	zwf	HCH_00347	-	glucose-6-phosphate 1-dehydrogenase
337	 60.73	+1	367704..368411	+	235	83643250	-	HCH_00348	-	6-phosphogluconolactonase
338	 58.41	0	368448..369101	+	217	83643251	eda	HCH_00349	-	2-keto-3-deoxy-6-phosphogluconate aldolase
339	 47.31	-1	369144..369236	-	30	83643252	-	HCH_00350	-	hypothetical protein
340	 59.71	+1	369233..370252	-	339	83643253	-	HCH_00351	-	hypothetical protein
341	 58.93	0	370301..371773	-	490	83643254	-	HCH_00352	-	hypothetical protein
342	 48.55	0	371714..371851	+	45	83643255	-	HCH_00353	-	hypothetical protein
343	 55.99	0	372031..373182	-	383	83643256	-	HCH_00354	-	hypothetical protein
344	 53.23	0	373436..374179	-	247	83643257	-	HCH_00355	-	amino acid ABC transporter periplasmic protein
345	 58.45	0	374262..376805	-	847	83643258	-	HCH_00356	-	extracellular nuclease
346	 37.98	-2	377073..377201	-	42	83643259	-	HCH_00357	-	hypothetical protein
347	 51.57	0	377294..377611	+	105	83643260	-	HCH_00358	-	endonuclease
348	 56.43	0	377668..378312	+	214	83643261	-	HCH_00359	-	putative protein-S-isoprenylcysteine methyltransferase
349	 55.87	0	378317..379279	-	320	83643262	-	HCH_00360	-	alpha/beta superfamily hydrolase/acyltransferase
350	 55.66	0	379489..380451	+	320	83643263	-	HCH_00361	-	uncharacterized low-complexity protein
351	 58.47	0	380549..381463	+	304	83643264	-	HCH_00362	-	hypothetical protein
352	 54.38	0	381489..382025	-	178	83643265	-	HCH_00363	-	restriction endonuclease
353	 47.44	-1	382129..382284	+	51	83643266	-	HCH_00364	-	hypothetical protein
354	 53.46	0	382347..383141	+	264	83643267	-	HCH_00365	-	hypothetical protein
355	 34.41	-2	383125..383310	+	61	83643268	-	HCH_00366	-	hypothetical protein
356	 36.86	-2	383596..384984	+	462	83643269	-	HCH_00368	-	response regulator
357	 46.83	-1	385262..385387	-	41	83643270	-	HCH_00369	-	hypothetical protein
358	 58.05	0	385309..385575	-	88	83643271	-	HCH_00370	-	hypothetical protein
359	 29.97	-2	385752..386078	+	108	83643272	-	HCH_00371	-	hypothetical protein
360	 28.12	-2	386005..386100	+	31	83643273	-	HCH_00372	-	hypothetical protein
361	 62.34	+1	386106..387191	-	361	83643274	-	HCH_00373	-	hypothetical protein
362	 59.38	+1	387167..387880	-	237	83643275	-	HCH_00374	-	hypothetical protein
363	 61.11	+1	387877..388398	-	173	83643276	-	HCH_00375	-	nucleoid DNA-binding protein
364	 64.67	+1	388395..389294	-	299	83643277	-	HCH_00376	-	phage protein
365	 64.04	+1	389294..389635	-	113	83643278	-	HCH_00377	-	hypothetical protein
366	 61.65	+1	389652..391466	-	604	83643279	-	HCH_00378	-	hypothetical protein
367	 63.15	+1	391480..392076	-	198	83643280	-	HCH_00379	-	phage protein
368	 61.79	+1	392073..393242	-	389	83643281	-	HCH_00380	-	uncharacterized phage Mu protein gp47-like protein
369	 56.92	0	393239..393556	-	105	83643282	-	HCH_00381	-	phage protein
370	 64.99	+2	393560..395584	-	674	83643283	-	HCH_00382	-	phage protein
371	 60.00	+1	395768..396052	-	94	83643284	-	HCH_00383	-	phage protein
372	 58.87	0	396024..396254	-	76	83643285	-	HCH_00384	-	hypothetical protein
373	 61.25	+1	396258..396737	-	159	83643286	-	HCH_00385	-	hypothetical protein
374	 59.52	+1	396734..397321	-	195	83643287	-	HCH_00386	-	hypothetical protein
375	 63.71	+1	397318..397554	-	78	83643288	-	HCH_00387	-	DnaK suppressor protein
376	 59.21	+1	397558..398013	-	151	83643289	-	HCH_00388	-	phage protein
377	 62.23	+1	398032..399135	-	367	83643290	-	HCH_00389	-	phage protein
378	 64.71	+2	399138..399800	-	220	83643291	-	HCH_00390	-	phage protein
379	 66.05	+2	399775..400263	-	162	83643292	-	HCH_00391	-	hypothetical protein
380	 61.72	+1	400263..400727	-	154	83643293	-	HCH_00392	-	phage head completeion protein
381	 61.97	+1	400827..401528	-	233	83643294	-	HCH_00393	-	phage small terminate subunit
382	 59.54	+1	401532..402569	-	345	83643295	-	HCH_00394	-	P2 family phage major capsid protein
383	 60.78	+1	402595..403410	-	271	83643296	-	HCH_00395	-	flagellar biosynthesis/type III secretory pathway protein
384	 56.99	0	403570..405315	+	581	83643297	-	HCH_00396	-	Mu-like prophage FluMu protein gp28
385	 52.99	0	405330..406316	+	328	83643298	-	HCH_00397	-	PBSX family phage portal protein
386	 49.24	0	406381..406644	+	87	83643299	-	HCH_00398	-	hypothetical protein
387	 42.20	-1	407179..407979	-	266	83643300	-	HCH_00399	-	hypothetical protein
388	 50.07	0	407973..409346	-	457	83643301	-	HCH_00400	-	hypothetical protein
389	 52.85	0	409542..410120	-	192	83643302	-	HCH_00401	-	putative exonuclease
390	 52.91	0	410185..410373	-	62	83643303	-	HCH_00402	-	hypothetical protein
391	 58.56	0	410521..411075	-	184	83643304	-	HCH_00403	-	hypothetical protein
392	 53.71	0	411533..414187	-	884	83643305	-	HCH_00404	-	hypothetical protein
393	 43.03	-1	414977..415987	+	336	83643306	-	HCH_00405	-	integrase
394	 56.04	0	416063..417172	+	369	83643307	-	HCH_00406	-	hypothetical protein
395	 56.80	0	417263..418093	+	276	83643308	-	HCH_00407	-	hypothetical protein
396	 57.86	0	418099..418518	+	139	83643309	-	HCH_00408	-	protein chain release factor B
397	 58.48	0	418598..420514	-	638	83643310	-	HCH_00409	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
398	 53.23	0	420648..421436	-	262	83643311	-	HCH_00410	-	amino acid ABC transporter periplasmic protein
399	 55.11	0	421856..422227	+	123	83643312	-	HCH_00412	-	hypothetical protein
400	 52.87	0	422312..422782	+	156	83643313	-	HCH_00413	-	hypothetical protein
401	 62.48	+1	422825..423325	+	166	83643314	-	HCH_00414	-	protein-tyrosine phosphatase
402	 55.11	0	423541..424665	+	374	83643315	-	HCH_00415	-	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
403	 54.58	0	424826..425371	+	181	83643316	-	HCH_00416	-	TRAP-type mannitol/chloroaromatic compound transport system, small permease component
404	 58.20	0	425368..426654	+	428	83643317	-	HCH_00417	-	TRAP-type mannitol/chloroaromatic compound transport system, large permease component
405	 55.33	0	426716..428056	+	446	83643318	-	HCH_00418	-	Signal transduction histidine kinase
406	 54.49	0	428067..428690	+	207	83643319	-	HCH_00419	-	response regulator
407	 57.20	0	428738..429223	+	161	83643320	-	HCH_00420	-	cell wall-associated hydrolase (invasion-associated protein)
408	 50.00	0	429326..429661	+	111	83643321	-	HCH_00421	-	protein tyrosine phosphatase
409	 49.85	0	429741..430067	+	108	83643322	-	HCH_00422	-	hypothetical protein
410	 56.00	0	430217..431032	+	271	83643323	-	HCH_00423	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.