IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3509	 59.45	+1	3837909..3839294	-	461	83646422	-	HCH_03695	-	diaminopimelate decarboxylase
3510	 54.68	0	3839314..3840456	-	380	83646423	-	HCH_03696	-	dehydrogenase
3511	 54.36	0	3841011..3841928	+	305	83646424	-	HCH_03697	-	transcriptional regulator
3512	 52.90	0	3841987..3843228	-	413	83646425	-	HCH_03698	-	hypothetical protein
3513	 60.53	+1	3843407..3844384	-	325	83646426	-	HCH_03699	-	Ca2+/Na+ antiporter
3514	 50.66	0	3844848..3845378	+	176	83646427	-	HCH_03700	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
3515	 59.22	+1	3845375..3847765	+	796	83646428	-	HCH_03701	-	Signal transduction histidine kinase
3516	 56.95	0	3847762..3848883	+	373	83646429	-	HCH_03702	-	response regulator
3517	 61.61	+1	3848963..3850069	-	368	83646430	-	HCH_03703	-	chemotaxis response regulator
3518	 58.02	0	3850066..3851025	-	319	83646431	-	HCH_03704	-	chemotaxis protein, stimulates methylation of MCP protein
3519	 55.12	0	3850998..3851837	-	279	83646432	-	HCH_03705	-	methylase of chemotaxis methyl-accepting protein
3520	 56.53	0	3851837..3852349	-	170	83646433	-	HCH_03706	-	chemotaxis signal transduction protein
3521	 57.43	0	3852380..3854035	-	551	83646434	-	HCH_03707	-	methyl-accepting chemotaxis protein
3522	 52.08	0	3854048..3854143	+	31	83646435	-	HCH_03708	-	hypothetical protein
3523	 60.09	+1	3854178..3856307	-	709	83646436	-	HCH_03709	-	chemotaxis protein histidine kinase-like kinase
3524	 58.80	0	3856531..3856797	-	88	83646437	-	HCH_03710	-	anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
3525	 53.88	0	3856829..3857266	-	145	83646438	-	HCH_03711	-	FOG: CheY-like receiver
3526	 54.95	0	3857403..3859109	-	568	83646439	-	HCH_03713	-	FOG EAL domain-containing protein
3527	 53.78	0	3859344..3860600	+	418	83646440	-	HCH_03714	-	Signal transduction histidine kinase
3528	 58.36	0	3860750..3861604	+	284	83646441	-	HCH_03715	-	alpha/beta superfamily hydrolase/acyltransferase
3529	 48.96	0	3861725..3861820	-	31	83646442	-	HCH_03716	-	hypothetical protein
3530	 59.78	+1	3862034..3862948	+	304	83646443	-	HCH_03717	-	glutathione synthase/ribosomal protein S6 modification glutaminyl transferase
3531	 55.63	0	3863005..3863865	+	286	83646444	-	HCH_03718	-	hypothetical protein
3532	 60.75	+1	3863902..3864729	+	275	83646445	-	HCH_03719	-	hypothetical protein
3533	 58.73	0	3864785..3866119	+	444	83646446	-	HCH_03720	-	Mg2+/Co2+ transporter
3534	 52.56	0	3866184..3866573	-	129	83646447	-	HCH_03721	-	hypothetical protein
3535	 48.21	0	3866601..3866768	-	55	83646448	-	HCH_03722	-	hypothetical protein
3536	 45.50	-1	3866846..3867223	+	125	83646449	-	HCH_03724	-	hypothetical protein
3537	 47.41	-1	3867373..3868125	-	250	83646450	-	HCH_03725	-	short chain dehydrogenase
3538	 44.19	-1	3868204..3868590	+	128	83646451	-	HCH_03726	-	transcriptional regulator
3539	 42.06	-2	3868698..3869075	-	125	83646452	-	HCH_03727	-	hypothetical protein
3540	 53.91	0	3869123..3869506	-	127	83646453	-	HCH_03728	-	hypothetical protein
3541	 52.67	0	3869727..3870455	+	242	83646454	-	HCH_03730	-	hypothetical protein
3542	 60.80	+1	3870466..3871062	+	198	83646455	-	HCH_03731	-	hypothetical protein
3543	 51.52	0	3871408..3871803	-	131	83646456	-	HCH_03732	-	hypothetical protein
3544	 57.58	0	3872025..3873851	-	608	83646457	-	HCH_03733	-	glycosyl hydrolase
3545	 46.58	-1	3874101..3874334	-	77	83646458	-	HCH_03734	-	hypothetical protein
3546	 54.42	0	3874556..3875200	-	214	83646459	-	HCH_03735	-	hypothetical protein
3547	 39.22	-2	3875290..3875391	-	33	83646460	-	HCH_03736	-	hypothetical protein
3548	 49.52	0	3875729..3876877	+	382	83646461	-	HCH_03737	-	hypothetical protein
3549	 50.82	0	3876787..3877638	+	283	83646462	-	HCH_03738	-	hypothetical protein
3550	 50.20	0	3877663..3878403	+	246	83646463	-	HCH_03739	-	hypothetical protein
3551	 50.58	0	3878406..3879176	+	256	83646464	-	HCH_03740	-	hypothetical protein
3552	 39.28	-2	3879364..3880557	+	397	83646465	-	HCH_03741	-	hypothetical protein
3553	 44.68	-1	3880677..3880817	+	46	83646466	-	HCH_03742	-	hypothetical protein
3554	 43.56	-1	3881430..3881654	+	74	83646467	-	HCH_03743	-	hypothetical protein
3555	 55.11	0	3881775..3883712	+	645	83646468	-	HCH_03744	-	hypothetical protein
3556	 56.95	0	3883840..3884292	-	150	83646469	-	HCH_03745	-	acetyltransferase
3557	 50.39	0	3884366..3884623	-	85	83646470	-	HCH_03746	-	hypothetical protein
3558	 57.82	0	3884946..3886934	-	662	83646471	-	HCH_03747	-	methyl-accepting chemotaxis protein
3559	 55.03	0	3887379..3887885	-	168	83646472	-	HCH_03749	-	hypothetical protein
3560	 59.74	+1	3888022..3888960	-	312	83646473	-	HCH_03750	-	hypothetical protein
3561	 49.02	0	3888978..3889130	+	50	83646474	-	HCH_03751	-	hypothetical protein
3562	 58.43	0	3889259..3890059	+	266	83646475	-	HCH_03752	-	cystine transporter subunit
3563	 61.43	+1	3890056..3890724	+	222	83646476	-	HCH_03754	-	ABC-type amino acid transport system, permease component
3564	 60.10	+1	3890730..3891506	+	258	83646477	-	HCH_03756	-	putative amino-acid ABC transporter ATP-binding protein YecC
3565	 60.83	+1	3891482..3892183	-	233	83646478	-	HCH_03755	-	glutamine amidotransferase
3566	 59.04	+1	3892156..3893139	-	327	83646479	-	HCH_03757	-	hypothetical protein
3567	 54.11	0	3893382..3893612	-	76	83646480	-	HCH_03758	-	hypothetical protein
3568	 60.18	+1	3893656..3894750	+	364	83646481	-	HCH_03759	-	membrane-fusion protein
3569	 60.18	+1	3894747..3897875	+	1042	83646482	-	HCH_03760	-	cation/multidrug efflux pump
3570	 46.59	-1	3897944..3898207	-	87	83646483	-	HCH_03761	-	hypothetical protein
3571	 33.33	-2	3898271..3898420	+	49	83646484	-	HCH_03762	-	hypothetical protein
3572	 42.35	-1	3899090..3899344	-	84	83646485	-	HCH_03763	-	hypothetical protein
3573	 47.74	0	3899341..3899826	-	161	83646486	-	HCH_03764	-	hypothetical protein
3574	 38.89	-2	3900011..3900118	-	35	83646487	-	HCH_03765	-	hypothetical protein
3575	 37.80	-2	3900296..3901012	-	238	83646488	-	HCH_03766	-	hypothetical protein
3576	 42.11	-1	3901017..3901688	-	223	83646489	-	HCH_03767	-	hypothetical protein
3577	 44.89	-1	3901685..3902662	-	325	83646490	-	HCH_03768	-	hypothetical protein
3578	 33.33	-2	3902731..3903000	-	89	83646491	-	HCH_03769	-	hypothetical protein
3579	 36.59	-2	3903108..3903506	-	132	83646492	-	HCH_03770	-	hypothetical protein
3580	 44.82	-1	3903516..3904403	-	295	83646493	-	HCH_03771	-	Rhs family protein
3581	 32.44	-2	3904633..3905079	-	148	83646494	-	HCH_03772	-	hypothetical protein
3582	 28.57	-2	3905048..3905152	-	34	83646495	-	HCH_03773	-	hypothetical protein
3583	 37.14	-2	3905244..3906083	-	279	83646496	-	HCH_03774	-	hypothetical protein
3584	 52.38	0	3906352..3906981	-	209	83646497	-	HCH_03775	-	Rhs family protein
3585	 60.22	+1	3906958..3907143	+	61	83646498	-	HCH_03776	-	hypothetical protein
3586	 43.79	-1	3907251..3908666	-	471	83646499	-	HCH_03777	-	Rhs family protein
3587	 32.71	-2	3909174..3909494	-	106	83646500	-	HCH_03778	-	hypothetical protein
3588	 40.67	-2	3910077..3910376	-	99	83646501	-	HCH_03779	-	hypothetical protein
3589	 59.34	+1	3910488..3911006	-	172	83646502	-	HCH_03780	-	transposase
3590	 55.40	0	3911433..3911849	-	138	83646503	-	HCH_03781	-	Rhs family protein
3591	 55.90	0	3911823..3912017	+	64	83646504	-	HCH_03782	-	hypothetical protein
3592	 33.95	-2	3912050..3912373	-	107	83646505	-	HCH_03783	-	hypothetical protein
3593	 56.90	0	3912384..3916622	-	1412	83646506	-	HCH_03784	-	Rhs family protein
3594	 48.16	0	3916889..3917866	-	325	83646507	-	HCH_03785	-	Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
3595	 48.89	0	3917842..3918246	-	134	83646508	-	HCH_03786	-	hypothetical protein
3596	 57.68	0	3918406..3919551	-	381	83646509	-	HCH_03787	-	oxidoreductase
3597	 61.24	+1	3919862..3923032	-	1056	83646510	-	HCH_03788	-	cation/multidrug efflux pump
3598	 63.42	+1	3923042..3924181	-	379	83646511	-	HCH_03789	-	membrane-fusion protein
3599	 61.22	+1	3924448..3925512	+	354	83646512	-	HCH_03790	-	iron-enterobactin transporter periplasmic binding protein
3600	 62.47	+1	3925597..3926883	-	428	83646513	-	HCH_03791	-	enterobactin exporter EntS
3601	 63.52	+1	3927147..3928067	+	306	83646514	-	HCH_03792	-	iron-enterobactin transporter membrane protein
3602	 63.33	+1	3928064..3929113	+	349	83646515	-	HCH_03793	-	iron-enterobactin transporter permease
3603	 60.56	+1	3929110..3929994	+	294	83646516	-	HCH_03795	-	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase components
3604	 52.86	0	3929939..3930619	-	226	83646517	-	HCH_03794	-	glutathione S-transferase
3605	 55.39	0	3930621..3931019	-	132	83646518	-	HCH_03796	-	hypothetical protein
3606	 55.36	0	3931121..3931987	+	288	83646519	-	HCH_03797	-	transcriptional regulator
3607	 47.06	-1	3931956..3932057	+	33	83646520	-	HCH_03799	-	hypothetical protein
3608	 48.61	0	3932050..3932697	-	215	83646521	-	HCH_03798	-	endonuclease/exonuclease/phosphatase family protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.