IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3441	 44.19	-1	3764734..3765525	+	263	83646354	-	HCH_03624	-	flagellar motor protein
3442	 43.86	-1	3765522..3767003	+	493	83646355	-	HCH_03626	-	hypothetical protein
3443	 47.50	-1	3766068..3766187	-	39	83646356	-	HCH_03625	-	hypothetical protein
3444	 43.56	-1	3767004..3770015	+	1003	83646357	-	HCH_03627	-	SNF2 family DNA/RNA helicase
3445	 52.38	0	3770063..3770482	-	139	83646358	-	HCH_03628	-	hypothetical protein
3446	 56.43	0	3770524..3771324	-	266	83646359	-	HCH_03629	-	hypothetical protein
3447	 56.44	0	3771508..3772563	-	351	83646360	-	HCH_03630	-	Beta-lactamase class C and other penicillin binding protein
3448	 49.03	0	3772802..3773266	+	154	83646361	bfr1	HCH_03631	-	bacterioferritin
3449	 58.22	0	3773510..3774634	-	374	83646362	-	HCH_03632	-	permease
3450	 55.74	0	3774753..3775484	-	243	83646363	-	HCH_03633	-	FOG: CheY-like receiver
3451	 55.56	0	3775584..3775952	-	122	83646364	-	HCH_03634	-	hypothetical protein
3452	 59.60	+1	3775666..3775764	+	32	83646365	-	HCH_03635	-	hypothetical protein
3453	 50.06	0	3776331..3777227	+	298	83646366	-	HCH_03636	-	hypothetical protein
3454	 54.98	0	3777224..3777514	-	96	83646367	-	HCH_03637	-	hypothetical protein
3455	 55.00	0	3777398..3777517	+	39	83646368	-	HCH_03638	-	hypothetical protein
3456	 50.12	0	3777688..3778497	-	269	83646369	-	HCH_03639	-	deoxygenase
3457	 42.08	-1	3778628..3778867	+	79	83646370	-	HCH_03640	-	hypothetical protein
3458	 55.80	0	3778879..3780120	+	413	83646371	dapF2	HCH_03641	-	diaminopimelate epimerase
3459	 60.53	+1	3780196..3782475	+	759	83646372	-	HCH_03642	-	major facilitator superfamily protein
3460	 60.29	+1	3782489..3783994	+	501	83646373	-	HCH_03643	-	hypothetical protein
3461	 54.79	0	3784145..3785323	+	392	83646374	-	HCH_03644	-	ABC-type uncharacterized transport system, periplasmic component
3462	 55.53	0	3785372..3786547	+	391	83646375	-	HCH_03645	-	ABC-type uncharacterized transport system, periplasmic component
3463	 55.79	0	3786550..3789078	+	842	83646376	-	HCH_03646	-	Signal transduction histidine kinase
3464	 55.19	0	3789177..3791702	-	841	83646377	-	HCH_03647	-	signal transduction protein
3465	 57.91	0	3791829..3793883	-	684	83646378	-	HCH_03648	-	elongation factor G
3466	 60.62	+1	3794356..3797148	-	930	83646379	-	HCH_03649	-	molecular chaperone
3467	 61.23	+1	3797151..3799007	-	618	83646380	-	HCH_03650	-	molecular chaperone
3468	 55.22	0	3799004..3799597	-	197	83646381	-	HCH_03651	-	hypothetical protein
3469	 41.20	-2	3799914..3800129	-	71	83646382	-	HCH_03652	-	hypothetical protein
3470	 47.06	-1	3800570..3800671	-	33	83646383	-	HCH_03653	-	hypothetical protein
3471	 51.39	0	3800643..3800930	+	95	83646384	-	HCH_03654	-	hypothetical protein
3472	 50.88	0	3800940..3801167	-	75	83646385	-	HCH_03655	-	hypothetical protein
3473	 53.89	0	3801306..3802244	+	312	83646386	cdtB	HCH_03656	-	cytolethal distending toxin B-like protein
3474	 46.93	-1	3802268..3802789	+	173	83646387	-	HCH_03657	-	hypothetical protein
3475	 58.72	0	3802866..3803696	-	276	83646388	-	HCH_03658	-	SAM-dependent methyltransferase
3476	 47.48	-1	3803942..3804556	-	204	83646389	-	HCH_03659	-	hypothetical protein
3477	 38.74	-2	3804531..3804641	+	36	83646390	-	HCH_03660	-	hypothetical protein
3478	 53.74	0	3804695..3805576	+	293	83646391	-	HCH_03661	-	hypothetical protein
3479	 55.09	0	3806137..3807492	-	451	83646392	phy	HCH_03662	-	3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
3480	 57.38	0	3807596..3808930	-	444	83646393	-	HCH_03663	-	hypothetical protein
3481	 50.67	0	3809179..3809628	+	149	83646394	-	HCH_03664	-	hypothetical protein
3482	 59.12	+1	3809780..3812176	-	798	83646395	-	HCH_03665	-	phosphohydrolase
3483	 61.14	+1	3812237..3812905	-	222	83646396	-	HCH_03666	-	hypothetical protein
3484	 60.71	+1	3812902..3814428	-	508	83646397	-	HCH_03667	-	hypothetical protein
3485	 58.85	0	3815109..3815684	-	191	83646398	-	HCH_03668	-	hypothetical protein
3486	 55.33	0	3816170..3816901	-	243	83646399	-	HCH_03669	-	endoglucanase
3487	 56.44	0	3817095..3817994	+	299	83646400	-	HCH_03670	-	EF hand domain-containing protein
3488	 54.46	0	3817998..3818546	+	182	83646401	-	HCH_03671	-	hypothetical protein
3489	 54.13	0	3818543..3818869	+	108	83646402	-	HCH_03672	-	hypothetical protein
3490	 50.93	0	3819057..3819164	+	35	83646403	-	HCH_03673	-	hypothetical protein
3491	 58.90	0	3819336..3821666	+	776	83646404	-	HCH_03674	-	hypothetical protein
3492	 56.04	0	3821798..3822004	+	68	83646405	-	HCH_03677	-	hypothetical protein
3493	 56.11	0	3821837..3822016	-	59	83646406	-	HCH_03675	-	hypothetical protein
3494	 57.05	0	3821946..3822101	-	51	83646407	-	HCH_03676	-	hypothetical protein
3495	 57.56	0	3822088..3822987	+	299	83646408	-	HCH_03678	-	DMT family permease
3496	 55.45	0	3823051..3823656	-	201	83646409	-	HCH_03679	-	hypothetical protein
3497	 59.62	+1	3823739..3824377	-	212	83646410	-	HCH_03680	-	Co/Zn/Cd efflux system component
3498	 55.25	0	3824466..3824903	-	145	83646411	cadR	HCH_03681	-	Cd(II)/Pb(II)-responsive transcriptional regulator
3499	 58.39	0	3824951..3825880	-	309	83646412	-	HCH_03682	-	hypothetical protein
3500	 55.37	0	3826267..3828108	-	613	83646413	-	HCH_03684	-	Serine/threonine protein kinase
3501	 59.80	+1	3828126..3829712	-	528	83646414	sucB1	HCH_03685	-	dihydrolipoamide acetyltransferase
3502	 55.52	0	3829725..3830693	-	322	83646415	-	HCH_03686	-	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit beta
3503	 56.99	0	3830695..3831882	-	395	83646416	-	HCH_03687	-	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component subunit alpha
3504	 47.32	-1	3832339..3833496	-	385	83646417	-	HCH_03688	-	hypothetical protein
3505	 52.70	0	3833552..3834460	-	302	83646418	-	HCH_03689	-	hypothetical protein
3506	 49.31	0	3834675..3835544	-	289	83646419	-	HCH_03690	-	hypothetical protein
3507	 56.22	0	3835794..3836702	-	302	83646420	-	HCH_03692	-	DMT family permease
3508	 59.91	+1	3836789..3837853	-	354	83646421	-	HCH_03693	-	cysteine synthase
3509	 59.45	+1	3837909..3839294	-	461	83646422	-	HCH_03695	-	diaminopimelate decarboxylase
3510	 54.68	0	3839314..3840456	-	380	83646423	-	HCH_03696	-	dehydrogenase
3511	 54.36	0	3841011..3841928	+	305	83646424	-	HCH_03697	-	transcriptional regulator
3512	 52.90	0	3841987..3843228	-	413	83646425	-	HCH_03698	-	hypothetical protein
3513	 60.53	+1	3843407..3844384	-	325	83646426	-	HCH_03699	-	Ca2+/Na+ antiporter
3514	 50.66	0	3844848..3845378	+	176	83646427	-	HCH_03700	-	2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
3515	 59.22	+1	3845375..3847765	+	796	83646428	-	HCH_03701	-	Signal transduction histidine kinase
3516	 56.95	0	3847762..3848883	+	373	83646429	-	HCH_03702	-	response regulator
3517	 61.61	+1	3848963..3850069	-	368	83646430	-	HCH_03703	-	chemotaxis response regulator
3518	 58.02	0	3850066..3851025	-	319	83646431	-	HCH_03704	-	chemotaxis protein, stimulates methylation of MCP protein
3519	 55.12	0	3850998..3851837	-	279	83646432	-	HCH_03705	-	methylase of chemotaxis methyl-accepting protein
3520	 56.53	0	3851837..3852349	-	170	83646433	-	HCH_03706	-	chemotaxis signal transduction protein
3521	 57.43	0	3852380..3854035	-	551	83646434	-	HCH_03707	-	methyl-accepting chemotaxis protein
3522	 52.08	0	3854048..3854143	+	31	83646435	-	HCH_03708	-	hypothetical protein
3523	 60.09	+1	3854178..3856307	-	709	83646436	-	HCH_03709	-	chemotaxis protein histidine kinase-like kinase
3524	 58.80	0	3856531..3856797	-	88	83646437	-	HCH_03710	-	anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
3525	 53.88	0	3856829..3857266	-	145	83646438	-	HCH_03711	-	FOG: CheY-like receiver
3526	 54.95	0	3857403..3859109	-	568	83646439	-	HCH_03713	-	FOG EAL domain-containing protein
3527	 53.78	0	3859344..3860600	+	418	83646440	-	HCH_03714	-	Signal transduction histidine kinase
3528	 58.36	0	3860750..3861604	+	284	83646441	-	HCH_03715	-	alpha/beta superfamily hydrolase/acyltransferase
3529	 48.96	0	3861725..3861820	-	31	83646442	-	HCH_03716	-	hypothetical protein
3530	 59.78	+1	3862034..3862948	+	304	83646443	-	HCH_03717	-	glutathione synthase/ribosomal protein S6 modification glutaminyl transferase
3531	 55.63	0	3863005..3863865	+	286	83646444	-	HCH_03718	-	hypothetical protein
3532	 60.75	+1	3863902..3864729	+	275	83646445	-	HCH_03719	-	hypothetical protein
3533	 58.73	0	3864785..3866119	+	444	83646446	-	HCH_03720	-	Mg2+/Co2+ transporter
3534	 52.56	0	3866184..3866573	-	129	83646447	-	HCH_03721	-	hypothetical protein
3535	 48.21	0	3866601..3866768	-	55	83646448	-	HCH_03722	-	hypothetical protein
3536	 45.50	-1	3866846..3867223	+	125	83646449	-	HCH_03724	-	hypothetical protein
3537	 47.41	-1	3867373..3868125	-	250	83646450	-	HCH_03725	-	short chain dehydrogenase
3538	 44.19	-1	3868204..3868590	+	128	83646451	-	HCH_03726	-	transcriptional regulator
3539	 42.06	-2	3868698..3869075	-	125	83646452	-	HCH_03727	-	hypothetical protein
3540	 53.91	0	3869123..3869506	-	127	83646453	-	HCH_03728	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.