IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3321	 45.87	-1	3648007..3648756	-	249	83646234	-	HCH_03498	-	hypothetical protein
3322	 51.11	0	3648783..3649277	+	164	83646235	-	HCH_03499	-	hypothetical protein
3323	 59.71	+1	3649373..3651097	-	574	83646236	-	HCH_03500	-	NhaP-type Na+/H+ and K+/H+ antiporter
3324	 55.69	0	3651368..3653644	+	758	83646237	-	HCH_03501	-	glutamate decarboxylase-like PLP-dependent protein
3325	 55.02	0	3653756..3654004	-	82	83646238	-	HCH_03502	-	GGDEF domain-containing protein
3326	 58.73	0	3653976..3655046	-	356	83646239	-	HCH_03503	-	GGDEF domain-containing protein
3327	 53.70	0	3655463..3656218	-	251	83646240	map1	HCH_03504	-	methionine aminopeptidase
3328	 45.91	-1	3656391..3657503	+	370	83646241	-	HCH_03505	-	leucine-rich repeat-containing protein
3329	 55.20	0	3657522..3658184	-	220	83646242	-	HCH_03506	-	hypothetical protein
3330	 46.26	-1	3658220..3658513	-	97	83646243	-	HCH_03507	-	hypothetical protein
3331	 51.43	0	3658556..3658660	+	34	83646244	-	HCH_03508	-	hypothetical protein
3332	 41.41	-2	3658653..3658751	+	32	83646245	-	HCH_03509	-	hypothetical protein
3333	 45.28	-1	3658964..3659524	-	186	83646246	-	HCH_03510	-	hypothetical protein
3334	 44.33	-1	3659784..3660683	-	299	83646247	-	HCH_03511	-	transcriptional regulator
3335	 50.00	0	3661082..3661201	-	39	83646248	-	HCH_03512	-	hypothetical protein
3336	 57.46	0	3661299..3662438	+	379	83646249	-	HCH_03513	-	membrane-fusion protein
3337	 60.15	+1	3662453..3665596	+	1047	83646250	-	HCH_03514	-	cation/multidrug efflux pump
3338	 56.30	0	3665601..3665957	-	118	83646251	-	HCH_03516	-	Cu/Zn superoxide dismutase
3339	 52.85	0	3666034..3666699	-	221	83646252	-	HCH_03517	-	hypothetical protein
3340	 50.95	0	3666686..3667054	-	122	83646253	-	HCH_03518	-	hypothetical protein
3341	 52.12	0	3667403..3668158	+	251	83646254	-	HCH_03519	-	amino acid ABC transporter periplasmic protein
3342	 50.88	0	3668182..3668295	+	37	83646255	-	HCH_03520	-	hypothetical protein
3343	 52.49	0	3668300..3669181	-	293	83646256	-	HCH_03521	-	amino acid ABC transporter periplasmic protein
3344	 57.65	0	3669295..3670692	-	465	83646257	-	HCH_03522	-	polyferredoxin
3345	 60.65	+1	3670831..3672243	-	470	83646258	-	HCH_03523	-	transcriptional regulator
3346	 62.33	+1	3672329..3673204	-	291	83646259	-	HCH_03524	-	citrate lyase beta subunit
3347	 57.63	0	3673381..3673878	+	165	83646260	-	HCH_03525	-	histone acetyltransferase HPA2-like acetyltransferase
3348	 60.04	+1	3673875..3674945	-	356	83646261	-	HCH_03526	-	NADH:flavin oxidoreductase
3349	 59.02	0	3675065..3675535	-	156	83646262	-	HCH_03527	-	transcriptional regulator
3350	 47.10	-1	3675792..3675929	+	45	83646263	-	HCH_03529	-	hypothetical protein
3351	 58.40	0	3675970..3678315	+	781	83646264	-	HCH_03530	-	hypothetical protein
3352	 58.77	0	3678321..3679637	+	438	83646265	-	HCH_03531	-	TPR repeat-containing protein
3353	 56.11	0	3679637..3683995	+	1452	83646266	-	HCH_03533	-	Rhs family protein
3354	 41.00	-2	3683996..3684256	+	86	83646267	-	HCH_03534	-	hypothetical protein
3355	 55.61	0	3684330..3684944	-	204	83646268	-	HCH_03535	-	transcriptional regulator
3356	 56.03	0	3684973..3686250	+	425	83646269	-	HCH_03536	-	Zn-dependent hydrolase
3357	 43.24	-1	3686495..3686605	+	36	83646270	-	HCH_03537	-	hypothetical protein
3358	 51.86	0	3686862..3687935	-	357	83646271	-	HCH_03538	-	hypothetical protein
3359	 58.70	0	3688251..3689267	+	338	83646272	-	HCH_03539	-	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
3360	 58.46	0	3689353..3689937	+	194	83646273	-	HCH_03541	-	TRAP-type mannitol/chloroaromatic compound transport system, small permease component
3361	 60.70	+1	3689930..3691252	+	440	83646274	-	HCH_03542	-	TRAP-type mannitol/chloroaromatic compound transport system, large permease component
3362	 55.90	0	3691273..3691857	+	194	83646275	-	HCH_03543	-	gluconate kinase
3363	 60.14	+1	3691854..3692849	+	331	83646276	-	HCH_03544	-	transcriptional regulator
3364	 55.19	0	3693038..3693586	+	182	83646277	-	HCH_03545	-	hypothetical protein
3365	 41.00	-2	3693773..3695467	-	564	83646278	-	HCH_03546	-	hypothetical protein
3366	 59.40	+1	3695752..3697911	+	719	83646279	-	HCH_03547	-	Thiol:disulfide interchange protein
3367	 57.89	0	3697799..3698413	+	204	83646280	-	HCH_03548	-	Thiol-disulfide isomerase and thioredoxins
3368	 40.96	-2	3699007..3699714	-	235	83646281	-	HCH_03549	-	hypothetical protein
3369	 35.90	-2	3699745..3699939	-	64	83646282	-	HCH_03550	-	hypothetical protein
3370	 38.78	-2	3699949..3700572	-	207	83646283	-	HCH_03551	-	hypothetical protein
3371	 45.83	-1	3700579..3700674	-	31	83646284	-	HCH_03552	-	hypothetical protein
3372	 47.22	-1	3700597..3700704	+	35	83646285	-	HCH_03553	-	hypothetical protein
3373	 38.64	-2	3700730..3701125	-	131	83646286	-	HCH_03554	-	hypothetical protein
3374	 47.93	0	3701127..3702791	-	554	83646287	-	HCH_03555	-	hypothetical protein
3375	 57.35	0	3703200..3703682	-	160	83646288	-	HCH_03556	-	hypothetical protein
3376	 52.75	0	3703988..3704332	-	114	83646289	-	HCH_03557	-	hypothetical protein
3377	 52.58	0	3704373..3704933	-	186	83646290	-	HCH_03558	-	hypothetical protein
3378	 52.20	0	3704980..3705297	-	105	83646291	-	HCH_03559	-	hypothetical protein
3379	 55.07	0	3705294..3705638	-	114	83646292	-	HCH_03560	-	hypothetical protein
3380	 50.33	0	3706074..3706532	-	152	83646293	-	HCH_03561	-	hypothetical protein
3381	 55.42	0	3706622..3707377	-	251	83646294	-	HCH_03562	-	hypothetical protein
3382	 51.79	0	3707568..3708851	-	427	83646295	-	HCH_03563	-	hypothetical protein
3383	 53.51	0	3709492..3709605	+	37	83646296	-	HCH_03565	-	AraC-type DNA-binding domain-containing protein
3384	 60.83	+1	3709556..3709675	-	39	83646297	-	HCH_03564	-	hypothetical protein
3385	 56.35	0	3709623..3709874	-	83	83646298	-	HCH_03566	-	hypothetical protein
3386	 51.45	0	3710006..3710143	-	45	83646299	-	HCH_03567	-	hypothetical protein
3387	 47.66	-1	3710121..3710462	+	113	83646300	-	HCH_03569	-	hypothetical protein
3388	 49.04	0	3710148..3710459	-	103	83646301	-	HCH_03568	-	hypothetical protein
3389	 56.36	0	3710701..3711612	-	303	83646302	-	HCH_03570	-	hypothetical protein
3390	 60.35	+1	3711814..3712272	-	152	83646303	-	HCH_03571	-	Thiol-disulfide isomerase and thioredoxins
3391	 62.13	+1	3712272..3713594	-	440	83646304	-	HCH_03572	-	BNR/Asp-box repeat-containing protein
3392	 59.56	+1	3713582..3715831	-	749	83646305	-	HCH_03573	-	Outer membrane receptor protein, mostly Fe transport
3393	 54.80	0	3716072..3716863	+	263	83646306	-	HCH_03575	-	amino acid ABC transporter periplasmic protein
3394	 47.60	-1	3716820..3717569	-	249	83646307	-	HCH_03574	-	hypothetical protein
3395	 53.81	0	3717750..3718130	-	126	83646308	-	HCH_03576	-	hypothetical protein
3396	 50.14	0	3718374..3719081	+	235	83646309	-	HCH_03577	-	hypothetical protein
3397	 45.40	-1	3719173..3719694	+	173	83646310	-	HCH_03578	-	hypothetical protein
3398	 38.60	-2	3719775..3720116	+	113	83646311	-	HCH_03579	-	hypothetical protein
3399	 35.03	-2	3720172..3720642	-	156	83646312	-	HCH_03580	-	zinc metallopeptidase
3400	 34.85	-2	3720759..3720956	-	65	83646313	-	HCH_03581	-	hypothetical protein
3401	 45.97	-1	3721110..3722003	-	297	83646314	-	HCH_03582	-	hypothetical protein
3402	 47.71	-1	3722175..3722501	-	108	83646315	-	HCH_03583	-	hypothetical protein
3403	 52.94	0	3722956..3725046	-	696	83646316	-	HCH_03584	-	putative multicopper oxidases
3404	 59.80	+1	3725376..3725885	-	169	83646317	-	HCH_03585	-	transcriptional regulator
3405	 60.84	+1	3725995..3726612	+	205	83646318	-	HCH_03586	-	nitroreductase
3406	 58.41	0	3726842..3729178	+	778	83646319	-	HCH_03588	-	Signal transduction histidine kinase
3407	 57.73	0	3729045..3729872	-	275	83646320	-	HCH_03587	-	amino acid ABC transporter periplasmic protein
3408	 53.89	0	3729939..3730697	-	252	83646321	-	HCH_03589	-	amino acid ABC transporter periplasmic protein
3409	 58.33	0	3730990..3731661	-	223	83646322	-	HCH_03590	-	Outer membrane protein W
3410	 55.72	0	3731957..3733408	-	483	83646323	-	HCH_03591	-	Outer membrane protein and related peptidoglycan-associated (lipo)protein
3411	 58.91	0	3733580..3733837	-	85	83646324	-	HCH_03593	-	hypothetical protein
3412	 59.43	+1	3733957..3734343	-	128	83646325	-	HCH_03594	-	glyoxalase/bleomycin resistance protein
3413	 59.33	+1	3734471..3735547	-	358	83646326	-	HCH_03595	-	hypothetical protein
3414	 56.97	0	3735802..3736131	-	109	83646327	-	HCH_03596	-	hypothetical protein
3415	 58.70	0	3736343..3736756	+	137	83646328	-	HCH_03597	-	hypothetical protein
3416	 53.41	0	3737049..3738707	+	552	83646329	-	HCH_03599	-	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
3417	 54.94	0	3738704..3739786	+	360	83646330	-	HCH_03600	-	cytochrome P450
3418	 53.75	0	3739866..3740879	+	337	83646331	-	HCH_03601	-	cytochrome P450
3419	 48.02	0	3740876..3741127	+	83	83646332	-	HCH_03602	-	polyketide synthase modules and related protein
3420	 55.58	0	3741124..3742809	+	561	83646333	-	HCH_03603	-	carbamoyl transferase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.