IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3292	 45.39	-1	3601279..3601419	+	46	83646205	-	HCH_03468	-	hypothetical protein
3293	 39.97	-2	3601492..3602652	-	386	83646206	-	HCH_03469	-	ATPase
3294	 52.43	0	3602720..3606877	-	1385	83646207	-	HCH_03471	-	Serine/threonine protein kinase
3295	 49.52	0	3606870..3607079	-	69	83646208	-	HCH_10013	-	transcriptional regulator
3296	 50.21	0	3607091..3607333	-	80	83646209	-	HCH_03472	-	hypothetical protein
3297	 57.39	0	3607503..3608267	-	254	83646210	-	HCH_03473	-	amino acid ABC transporter periplasmic protein
3298	 54.37	0	3608525..3609280	-	251	83646211	-	HCH_03474	-	amino acid ABC transporter periplasmic protein
3299	 59.12	+1	3609502..3612165	-	887	83646212	-	HCH_03476	-	FG-GAP repeat-containing protein
3300	 59.74	+1	3612190..3613416	-	408	83646213	-	HCH_03477	-	hypothetical protein
3301	 35.48	-2	3613442..3613534	-	30	83646214	-	HCH_03478	-	hypothetical protein
3302	 39.39	-2	3613970..3614068	+	32	83646215	-	HCH_03479	-	hypothetical protein
3303	 41.71	-2	3614187..3614723	-	178	83646216	-	HCH_03480	-	hypothetical protein
3304	 39.26	-2	3614777..3615367	-	196	83646217	-	HCH_03481	-	hypothetical protein
3305	 41.35	-2	3615925..3616161	+	78	83646218	-	HCH_03482	-	hypothetical protein
3306	 57.35	0	3616265..3617509	-	414	83646219	-	HCH_03483	-	major facilitator superfamily permease
3307	 58.56	0	3617629..3620700	-	1023	83646220	-	HCH_03484	-	polyketide synthase modules and related protein
3308	 60.94	+1	3620690..3627799	-	2369	83646221	-	HCH_03485	-	polyketide synthase modules and related protein
3309	 54.59	0	3627919..3628473	-	184	83646222	-	HCH_03486	-	nicotinamidase-like amidase
3310	 57.51	0	3628580..3629923	-	447	83646223	-	HCH_03487	-	NAD/FAD-binding protein
3311	 61.34	+1	3629942..3630823	-	293	83646224	-	HCH_03488	-	(acyl-carrier-protein) S-malonyltransferase
3312	 60.42	+1	3630884..3636610	-	1908	83646225	-	HCH_03489	-	polyketide synthase modules and related protein
3313	 59.44	+1	3636625..3637482	-	285	83646226	-	HCH_03490	-	polyketide synthase modules and related protein
3314	 58.23	0	3637451..3642532	-	1693	83646227	-	HCH_03491	-	polyketide synthase modules and related protein
3315	 53.54	0	3642603..3642701	-	32	83646228	-	HCH_03492	-	hypothetical protein
3316	 54.38	0	3643689..3644453	+	254	83646229	-	HCH_03493	-	hypothetical protein
3317	 48.95	0	3644516..3645424	-	302	83646230	-	HCH_03494	-	NADPH:quinone reductase and related Zn-dependent oxidoreductase
3318	 44.81	-1	3645539..3645904	+	121	83646231	-	HCH_03495	-	transcriptional regulator
3319	 42.09	-1	3646031..3646567	-	178	83646232	-	HCH_03496	-	hypothetical protein
3320	 40.30	-2	3646995..3647396	-	133	83646233	-	HCH_03497	-	hypothetical protein
3321	 45.87	-1	3648007..3648756	-	249	83646234	-	HCH_03498	-	hypothetical protein
3322	 51.11	0	3648783..3649277	+	164	83646235	-	HCH_03499	-	hypothetical protein
3323	 59.71	+1	3649373..3651097	-	574	83646236	-	HCH_03500	-	NhaP-type Na+/H+ and K+/H+ antiporter
3324	 55.69	0	3651368..3653644	+	758	83646237	-	HCH_03501	-	glutamate decarboxylase-like PLP-dependent protein
3325	 55.02	0	3653756..3654004	-	82	83646238	-	HCH_03502	-	GGDEF domain-containing protein
3326	 58.73	0	3653976..3655046	-	356	83646239	-	HCH_03503	-	GGDEF domain-containing protein
3327	 53.70	0	3655463..3656218	-	251	83646240	map1	HCH_03504	-	methionine aminopeptidase
3328	 45.91	-1	3656391..3657503	+	370	83646241	-	HCH_03505	-	leucine-rich repeat-containing protein
3329	 55.20	0	3657522..3658184	-	220	83646242	-	HCH_03506	-	hypothetical protein
3330	 46.26	-1	3658220..3658513	-	97	83646243	-	HCH_03507	-	hypothetical protein
3331	 51.43	0	3658556..3658660	+	34	83646244	-	HCH_03508	-	hypothetical protein
3332	 41.41	-2	3658653..3658751	+	32	83646245	-	HCH_03509	-	hypothetical protein
3333	 45.28	-1	3658964..3659524	-	186	83646246	-	HCH_03510	-	hypothetical protein
3334	 44.33	-1	3659784..3660683	-	299	83646247	-	HCH_03511	-	transcriptional regulator
3335	 50.00	0	3661082..3661201	-	39	83646248	-	HCH_03512	-	hypothetical protein
3336	 57.46	0	3661299..3662438	+	379	83646249	-	HCH_03513	-	membrane-fusion protein
3337	 60.15	+1	3662453..3665596	+	1047	83646250	-	HCH_03514	-	cation/multidrug efflux pump
3338	 56.30	0	3665601..3665957	-	118	83646251	-	HCH_03516	-	Cu/Zn superoxide dismutase
3339	 52.85	0	3666034..3666699	-	221	83646252	-	HCH_03517	-	hypothetical protein
3340	 50.95	0	3666686..3667054	-	122	83646253	-	HCH_03518	-	hypothetical protein
3341	 52.12	0	3667403..3668158	+	251	83646254	-	HCH_03519	-	amino acid ABC transporter periplasmic protein
3342	 50.88	0	3668182..3668295	+	37	83646255	-	HCH_03520	-	hypothetical protein
3343	 52.49	0	3668300..3669181	-	293	83646256	-	HCH_03521	-	amino acid ABC transporter periplasmic protein
3344	 57.65	0	3669295..3670692	-	465	83646257	-	HCH_03522	-	polyferredoxin
3345	 60.65	+1	3670831..3672243	-	470	83646258	-	HCH_03523	-	transcriptional regulator
3346	 62.33	+1	3672329..3673204	-	291	83646259	-	HCH_03524	-	citrate lyase beta subunit
3347	 57.63	0	3673381..3673878	+	165	83646260	-	HCH_03525	-	histone acetyltransferase HPA2-like acetyltransferase
3348	 60.04	+1	3673875..3674945	-	356	83646261	-	HCH_03526	-	NADH:flavin oxidoreductase
3349	 59.02	0	3675065..3675535	-	156	83646262	-	HCH_03527	-	transcriptional regulator
3350	 47.10	-1	3675792..3675929	+	45	83646263	-	HCH_03529	-	hypothetical protein
3351	 58.40	0	3675970..3678315	+	781	83646264	-	HCH_03530	-	hypothetical protein
3352	 58.77	0	3678321..3679637	+	438	83646265	-	HCH_03531	-	TPR repeat-containing protein
3353	 56.11	0	3679637..3683995	+	1452	83646266	-	HCH_03533	-	Rhs family protein
3354	 41.00	-2	3683996..3684256	+	86	83646267	-	HCH_03534	-	hypothetical protein
3355	 55.61	0	3684330..3684944	-	204	83646268	-	HCH_03535	-	transcriptional regulator
3356	 56.03	0	3684973..3686250	+	425	83646269	-	HCH_03536	-	Zn-dependent hydrolase
3357	 43.24	-1	3686495..3686605	+	36	83646270	-	HCH_03537	-	hypothetical protein
3358	 51.86	0	3686862..3687935	-	357	83646271	-	HCH_03538	-	hypothetical protein
3359	 58.70	0	3688251..3689267	+	338	83646272	-	HCH_03539	-	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
3360	 58.46	0	3689353..3689937	+	194	83646273	-	HCH_03541	-	TRAP-type mannitol/chloroaromatic compound transport system, small permease component
3361	 60.70	+1	3689930..3691252	+	440	83646274	-	HCH_03542	-	TRAP-type mannitol/chloroaromatic compound transport system, large permease component
3362	 55.90	0	3691273..3691857	+	194	83646275	-	HCH_03543	-	gluconate kinase
3363	 60.14	+1	3691854..3692849	+	331	83646276	-	HCH_03544	-	transcriptional regulator
3364	 55.19	0	3693038..3693586	+	182	83646277	-	HCH_03545	-	hypothetical protein
3365	 41.00	-2	3693773..3695467	-	564	83646278	-	HCH_03546	-	hypothetical protein
3366	 59.40	+1	3695752..3697911	+	719	83646279	-	HCH_03547	-	Thiol:disulfide interchange protein
3367	 57.89	0	3697799..3698413	+	204	83646280	-	HCH_03548	-	Thiol-disulfide isomerase and thioredoxins
3368	 40.96	-2	3699007..3699714	-	235	83646281	-	HCH_03549	-	hypothetical protein
3369	 35.90	-2	3699745..3699939	-	64	83646282	-	HCH_03550	-	hypothetical protein
3370	 38.78	-2	3699949..3700572	-	207	83646283	-	HCH_03551	-	hypothetical protein
3371	 45.83	-1	3700579..3700674	-	31	83646284	-	HCH_03552	-	hypothetical protein
3372	 47.22	-1	3700597..3700704	+	35	83646285	-	HCH_03553	-	hypothetical protein
3373	 38.64	-2	3700730..3701125	-	131	83646286	-	HCH_03554	-	hypothetical protein
3374	 47.93	0	3701127..3702791	-	554	83646287	-	HCH_03555	-	hypothetical protein
3375	 57.35	0	3703200..3703682	-	160	83646288	-	HCH_03556	-	hypothetical protein
3376	 52.75	0	3703988..3704332	-	114	83646289	-	HCH_03557	-	hypothetical protein
3377	 52.58	0	3704373..3704933	-	186	83646290	-	HCH_03558	-	hypothetical protein
3378	 52.20	0	3704980..3705297	-	105	83646291	-	HCH_03559	-	hypothetical protein
3379	 55.07	0	3705294..3705638	-	114	83646292	-	HCH_03560	-	hypothetical protein
3380	 50.33	0	3706074..3706532	-	152	83646293	-	HCH_03561	-	hypothetical protein
3381	 55.42	0	3706622..3707377	-	251	83646294	-	HCH_03562	-	hypothetical protein
3382	 51.79	0	3707568..3708851	-	427	83646295	-	HCH_03563	-	hypothetical protein
3383	 53.51	0	3709492..3709605	+	37	83646296	-	HCH_03565	-	AraC-type DNA-binding domain-containing protein
3384	 60.83	+1	3709556..3709675	-	39	83646297	-	HCH_03564	-	hypothetical protein
3385	 56.35	0	3709623..3709874	-	83	83646298	-	HCH_03566	-	hypothetical protein
3386	 51.45	0	3710006..3710143	-	45	83646299	-	HCH_03567	-	hypothetical protein
3387	 47.66	-1	3710121..3710462	+	113	83646300	-	HCH_03569	-	hypothetical protein
3388	 49.04	0	3710148..3710459	-	103	83646301	-	HCH_03568	-	hypothetical protein
3389	 56.36	0	3710701..3711612	-	303	83646302	-	HCH_03570	-	hypothetical protein
3390	 60.35	+1	3711814..3712272	-	152	83646303	-	HCH_03571	-	Thiol-disulfide isomerase and thioredoxins
3391	 62.13	+1	3712272..3713594	-	440	83646304	-	HCH_03572	-	BNR/Asp-box repeat-containing protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.