IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3090	 32.53	-2	3352199..3352570	+	123	83646003	-	HCH_03254	-	hypothetical protein
3091	 40.17	-2	3352576..3353058	+	160	83646004	-	HCH_03255	-	hypothetical protein
3092	 33.59	-2	3353067..3353459	+	130	83646005	-	HCH_03256	-	hypothetical protein
3093	 41.05	-2	3353817..3354140	+	107	83646006	-	HCH_03257	-	hypothetical protein
3094	 36.69	-2	3354207..3354623	+	138	83646007	-	HCH_03258	-	hypothetical protein
3095	 53.33	0	3354658..3355692	+	344	83646008	-	HCH_03259	-	transposase
3096	 53.56	0	3356886..3357923	-	345	83646009	-	HCH_03260	-	Type III secretory pathway, component EscU
3097	 54.71	0	3357989..3358774	-	261	83646010	-	HCH_03261	-	Type III secretory pathway, component EscT
3098	 60.37	+1	3358811..3359080	-	89	83646011	-	HCH_03262	-	Type III secretory pathway, component EscS
3099	 53.55	0	3359148..3359795	-	215	83646012	-	HCH_03263	-	type III secretion system protein
3100	 58.21	0	3359782..3360975	-	397	83646013	-	HCH_03264	-	flagellar motor switch/type III secretory pathway protein
3101	 59.39	+1	3360972..3361589	-	205	83646014	-	HCH_03266	-	hypothetical protein
3102	 58.09	0	3361586..3362098	-	170	83646015	-	HCH_03267	-	hypothetical protein
3103	 62.66	+1	3362112..3363458	-	448	83646016	-	HCH_03268	-	type III secretion system ATPase
3104	 39.62	-2	3363622..3365292	-	556	83646017	-	HCH_03269	-	ATPase
3105	 48.78	0	3365588..3366118	+	176	83646018	-	HCH_03270	-	transposase
3106	 49.75	0	3366413..3366814	+	133	83646019	-	HCH_03272	-	mannose-6-phosphate isomerase
3107	 58.30	0	3367207..3369297	-	696	83646020	-	HCH_03273	-	Type III secretory pathway, component EscV
3108	 60.95	+1	3369294..3369713	-	139	83646021	-	HCH_03274	-	TPR repeat-containing protein
3109	 62.94	+1	3369674..3370075	-	133	83646022	-	HCH_03275	-	hypothetical protein
3110	 58.99	0	3370087..3370464	-	125	83646023	-	HCH_03276	-	YopN chaperone SycN-like protein
3111	 58.64	0	3370514..3371647	-	377	83646024	-	HCH_03277	-	type II secretion target YopN-like protein
3112	 61.14	+1	3371895..3373052	-	385	83646025	-	HCH_03278	-	hypothetical protein
3113	 62.06	+1	3373110..3374237	-	375	83646026	-	HCH_03279	-	hypothetical protein
3114	 59.54	+1	3374234..3374794	-	186	83646027	-	HCH_03281	-	TPR repeat-containing protein
3115	 60.27	+1	3374813..3375109	-	98	83646028	-	HCH_03282	-	hypothetical protein
3116	 53.37	0	3375331..3375894	-	187	83646029	-	HCH_03283	-	hypothetical protein
3117	 54.99	0	3375364..3376074	+	236	83646030	-	HCH_03284	-	hypothetical protein
3118	 59.68	+1	3376227..3378917	+	896	83646031	-	HCH_03285	-	LuxR family regulatory protein
3119	 55.30	0	3379014..3379409	+	131	83646032	-	HCH_03286	-	hypothetical protein
3120	 54.71	0	3379599..3380150	+	183	83646033	-	HCH_03287	-	transposase
3121	 50.82	0	3380147..3380632	+	161	83646034	-	HCH_03288	-	transposase
3122	 54.40	0	3380702..3381190	+	162	83646035	-	HCH_03289	-	IS116/IS110/IS902 family transposase
3123	 48.74	0	3381515..3382663	+	382	83646036	-	HCH_03291	-	hypothetical protein
3124	 43.82	-1	3382660..3383412	+	250	83646037	-	HCH_03292	-	hypothetical protein
3125	 35.48	-2	3383524..3384081	-	185	83646038	-	HCH_03293	-	hypothetical protein
3126	 60.55	+1	3384623..3385276	-	217	83646039	-	HCH_03294	-	transposase
3127	 53.85	0	3385338..3385454	-	38	83646040	-	HCH_03295	-	hypothetical protein
3128	 59.40	+1	3385931..3387169	+	412	83646041	-	HCH_03296	-	ABC-type sugar transport system, periplasmic component
3129	 58.71	0	3387255..3388121	+	288	83646042	-	HCH_03297	-	ABC-type sugar transport system, permease components
3130	 57.16	0	3388118..3389011	+	297	83646043	-	HCH_03298	-	ABC-type sugar transport system, permease component
3131	 59.25	+1	3389023..3390141	+	372	83646044	-	HCH_03299	-	ABC-type sugar transport system, ATPase components
3132	 63.10	+1	3390131..3390943	+	270	83646045	-	HCH_03300	-	beta-lactamase superfamily hydrolase
3133	 62.74	+1	3390924..3391712	+	262	83646046	-	HCH_03301	-	fructose-1 6-bisphosphatase
3134	 60.83	+1	3391712..3392704	+	330	83646047	-	HCH_03302	-	transcriptional regulator
3135	 57.58	0	3392770..3394254	-	494	83646048	-	HCH_03303	-	QXW lectin repeat-containing protein
3136	 59.38	+1	3394324..3394419	-	31	83646049	-	HCH_03304	-	hypothetical protein
3137	 56.38	0	3395235..3397052	-	605	83646050	-	HCH_03305	-	TPR repeat-containing protein
3138	 58.04	0	3397170..3398201	-	343	83646051	-	HCH_03306	-	hypothetical protein
3139	 51.61	0	3398617..3398802	+	61	83646052	-	HCH_03307	-	hypothetical protein
3140	 56.41	0	3398799..3399344	-	181	83646053	-	HCH_03308	-	hypothetical protein
3141	 50.22	0	3399495..3399944	+	149	83646054	-	HCH_03309	-	hypothetical protein
3142	 60.57	+1	3400342..3401013	-	223	83646055	-	HCH_03310	-	siderophore-interacting protein
3143	 55.19	0	3401125..3401577	-	150	83646056	-	HCH_03311	-	transcriptional regulator
3144	 52.68	0	3401695..3402495	-	266	83646057	-	HCH_03312	-	amino acid ABC transporter periplasmic protein
3145	 60.88	+1	3402653..3404638	-	661	83646058	-	HCH_03313	-	transposase
3146	 57.71	0	3404702..3405817	-	371	83646059	-	HCH_03314	-	VWA_CoxE family protein
3147	 59.86	+1	3405807..3408143	-	778	83646060	-	HCH_03315	-	4-aminobutyrate aminotransferase and related aminotransferase
3148	 59.63	+1	3408143..3409237	-	364	83646061	-	HCH_03316	-	MoxR-like ATPase
3149	 57.22	0	3409234..3412281	-	1015	83646062	-	HCH_03317	-	hypothetical protein
3150	 53.13	0	3412577..3413071	+	164	83646063	-	HCH_03318	-	hypothetical protein
3151	 52.95	0	3413090..3414241	+	383	83646064	-	HCH_03319	-	hypothetical protein
3152	 58.78	0	3414342..3414734	+	130	83646065	-	HCH_03320	-	hypothetical protein
3153	 55.34	0	3414795..3416030	+	411	83646066	-	HCH_03321	-	putative esterase/lipase
3154	 52.98	0	3416218..3417123	-	301	83646067	-	HCH_03322	-	transcriptional regulator
3155	 56.12	0	3417313..3417957	+	214	83646068	-	HCH_03323	-	glutathione S-transferase
3156	 56.92	0	3417992..3418966	+	324	83646069	-	HCH_03324	-	flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
3157	 44.76	-1	3419324..3419428	+	34	83646070	-	HCH_03325	-	hypothetical protein
3158	 46.61	-1	3419790..3420143	-	117	83646071	-	HCH_03326	-	DNA-binding protein H-NS
3159	 49.93	0	3420452..3421126	-	224	83646072	-	HCH_03327	-	hypothetical protein
3160	 44.87	-1	3421144..3422088	-	314	83646073	-	HCH_03328	-	hypothetical protein
3161	 50.39	0	3422098..3423264	-	388	83646074	-	HCH_03330	-	hypothetical protein
3162	 58.08	0	3423603..3423800	+	65	83646075	-	HCH_03331	-	hypothetical protein
3163	 51.91	0	3423883..3425271	-	462	83646076	-	HCH_03332	-	transcriptional regulator
3164	 51.07	0	3425519..3426127	+	202	83646077	-	HCH_03333	-	Acyl carrier protein phosphodiesterase
3165	 48.69	0	3426219..3427286	+	355	83646078	-	HCH_03334	-	Thiol-disulfide isomerase and thioredoxins
3166	 52.76	0	3427313..3429376	+	687	83646079	-	HCH_03335	-	Thiol:disulfide interchange protein
3167	 56.92	0	3429441..3429830	-	129	83646080	-	HCH_03336	-	hypothetical protein
3168	 51.61	0	3430030..3431025	+	331	83646081	-	HCH_03338	-	AraC-type DNA-binding domain-containing protein
3169	 53.87	0	3430994..3431329	-	111	83646082	-	HCH_03337	-	hypothetical protein
3170	 49.39	0	3431664..3432236	+	190	83646083	-	HCH_03339	-	transcriptional regulator
3171	 50.27	0	3432723..3433850	+	375	83646084	-	HCH_03340	-	Zn-dependent hydrolase
3172	 52.78	0	3433917..3434564	+	215	83646085	-	HCH_03341	-	nucleoside-diphosphate-sugar epimerase
3173	 57.64	0	3434608..3434751	-	47	83646086	-	HCH_03342	-	hypothetical protein
3174	 51.42	0	3434795..3435253	+	152	83646087	-	HCH_03343	-	DNA-binding protein
3175	 48.17	0	3435382..3436608	+	408	83646088	-	HCH_03344	-	hypothetical protein
3176	 42.06	-2	3437093..3437344	-	83	83646089	-	HCH_03345	-	hypothetical protein
3177	 42.86	-1	3437561..3437665	+	34	83646090	-	HCH_03346	-	hypothetical protein
3178	 52.56	0	3437757..3438068	+	103	83646091	-	HCH_03347	-	hypothetical protein
3179	 53.41	0	3438083..3438859	+	258	83646092	-	HCH_03348	-	transcriptional regulator
3180	 45.45	-1	3438978..3439076	+	32	83646093	-	HCH_03349	-	hypothetical protein
3181	 50.78	0	3439231..3439551	-	106	83646094	-	HCH_03350	-	periplasmic or secreted lipoprotein
3182	 55.79	0	3439662..3440663	+	333	83646095	-	HCH_03351	-	transglutaminase-like enzyme, putative cysteine protease
3183	 53.26	0	3440687..3441469	+	260	83646096	-	HCH_03352	-	transglutaminase-like enzyme, putative cysteine protease
3184	 46.34	-1	3441513..3442250	-	245	83646097	-	HCH_03353	-	hypothetical protein
3185	 50.33	0	3442302..3442601	-	99	83646098	-	HCH_03354	-	hypothetical protein
3186	 44.70	-1	3443148..3443666	+	172	83646099	-	HCH_03355	-	chemotaxis protein CheC, inhibitor of MCP methylation
3187	 38.89	-2	3444124..3445743	+	539	83646100	-	HCH_03356	-	response regulator
3188	 51.07	0	3445945..3447303	+	452	83646101	-	HCH_03357	-	hypothetical protein
3189	 50.63	0	3447365..3447838	+	157	83646102	-	HCH_03358	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.