IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
258	 62.95	+1	282822..283709	-	295	83643171	-	HCH_00268	-	hypothetical protein
259	 57.20	0	283797..285539	-	580	83643172	-	HCH_00269	-	glycosidase
260	 57.70	0	285655..286881	-	408	83643173	-	HCH_00270	-	cell wall biosynthesis glycosyltransferase
261	 56.63	0	286952..287788	-	278	83643174	-	HCH_00271	-	mannosyl-3-phosphoglycerate phosphatase
262	 45.76	-1	288123..288299	-	58	83643175	-	HCH_00272	-	hypothetical protein
263	 54.70	0	288365..289609	+	414	83643176	-	HCH_00273	-	HD-GYP domain-containing protein
264	 58.51	0	289621..290919	+	432	83643177	-	HCH_00274	-	FOG EAL domain-containing protein
265	 59.16	+1	290940..291938	-	332	83643178	gap1	HCH_00275	-	glyceraldehyde-3-phosphate dehydrogenase, type I
266	 59.08	+1	292067..294295	-	742	83643179	-	HCH_00276	-	hypothetical protein
267	 54.09	0	294368..295138	-	256	83643180	-	HCH_00277	-	amino acid ABC transporter periplasmic protein
268	 55.79	0	295368..296084	-	238	83643181	fkpA	HCH_00278	-	FKBP-type peptidyl-prolyl cis-trans isomerases 1
269	 57.73	0	296211..296624	-	137	83643182	-	HCH_00279	-	hypothetical protein
270	 53.72	0	296719..297282	-	187	83643183	-	HCH_00280	-	hypothetical protein
271	 57.67	0	297331..299241	+	636	83643184	-	HCH_00281	-	ABC transporter ATPase
272	 55.28	0	299354..300460	+	368	83643185	-	HCH_00282	-	ABC-type branched-chain amino acid transport system, periplasmic component
273	 56.07	0	300563..302110	-	515	83643186	ppx	HCH_00283	-	exopolyphosphatase
274	 48.62	0	302392..302718	+	108	83643187	trx1	HCH_00284	-	thioredoxin
275	 53.29	0	302921..304183	+	420	83643188	rho	HCH_00285	-	transcription termination factor Rho
276	 56.48	0	304311..305783	+	490	83643189	ubiD	HCH_00286	-	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
277	 56.09	0	305794..306795	+	333	83643190	-	HCH_00287	-	CDP-6-deoxy-delta-3,4-glucoseen reductase
278	 56.59	0	306817..308067	-	416	83643191	hemY	HCH_00288	-	uncharacterized enzyme of heme biosynthesis
279	 56.05	0	308064..309467	-	467	83643192	hemX	HCH_00289	-	uncharacterized enzyme of heme biosynthesis
280	 57.60	0	309540..310322	-	260	83643193	-	HCH_00290	-	uroporphyrinogen-III synthase
281	 59.83	+1	310306..311241	-	311	83643194	hemC	HCH_00291	-	porphobilinogen deaminase
282	 58.30	0	311362..312102	-	246	83643195	algR	HCH_00292	-	alginate biosynthesis regulatory protein AlgR-like protein
283	 56.76	0	312143..313252	-	369	83643196	-	HCH_00293	-	signal transduction protein
284	 57.07	0	313368..314774	+	468	83643197	argH	HCH_00294	-	argininosuccinate lyase
285	 55.76	0	314897..317812	+	971	83643198	cyaA	HCH_00295	-	adenylate cyclase
286	 57.55	0	318180..319451	+	423	83643199	lysA	HCH_00297	-	diaminopimelate decarboxylase
287	 54.03	0	319464..320294	+	276	83643200	dapF	HCH_00298	-	diaminopimelate epimerase
288	 51.91	0	320415..321146	+	243	83643201	-	HCH_00299	-	hypothetical protein
289	 56.73	0	321177..322082	+	301	83643202	xerC	HCH_00300	-	site-specific tyrosine recombinase XerC
290	 46.97	-1	322179..322310	+	43	83643203	-	HCH_00301	-	hypothetical protein
291	 51.47	0	322300..324036	+	578	83643204	-	HCH_00302	-	response regulator
292	 53.70	0	324259..325299	+	346	83643205	-	HCH_00303	-	FOG: CheY-like receiver
293	 50.80	0	325452..326075	+	207	83643206	-	HCH_00304	-	response regulator
294	 53.37	0	326278..328278	-	666	83643207	-	HCH_00305	-	Signal transduction histidine kinase
295	 45.83	-1	328246..328341	+	31	83643208	-	HCH_00306	-	hypothetical protein
296	 48.57	0	328382..328486	+	34	83643209	-	HCH_00307	-	hypothetical protein
297	 53.85	0	328610..328843	-	77	83643210	-	HCH_00308	-	hypothetical protein
298	 53.43	0	328955..331636	+	893	83643211	-	HCH_00309	-	Signal transduction histidine kinase
299	 52.73	0	331812..332177	+	121	83643212	-	HCH_00310	-	hypothetical protein
300	 47.08	-1	332205..332444	-	79	83643213	-	HCH_00311	-	hypothetical protein
301	 58.71	0	332477..333268	-	263	83643214	-	HCH_00312	-	hypothetical protein
302	 53.06	0	333337..333630	-	97	83643215	-	HCH_00313	-	putative heme iron utilization protein
303	 55.07	0	333789..334340	-	183	83643216	-	HCH_00314	-	alpha/beta superfamily hydrolase
304	 59.32	+1	334393..334950	-	185	83643217	-	HCH_00315	-	Thiol-disulfide isomerase and thioredoxins
305	 58.71	0	335050..335640	+	196	83643218	-	HCH_00316	-	hypothetical protein
306	 56.38	0	335667..336113	-	148	83643219	-	HCH_00317	-	hypothetical protein
307	 51.95	0	336125..336790	-	221	83643220	-	HCH_00318	-	transcriptional regulator
308	 54.98	0	337270..338304	-	344	83643221	-	HCH_00319	-	glutamate dehydrogenase/leucine dehydrogenase
309	 54.62	0	338679..339500	+	273	83643222	-	HCH_00320	-	hypothetical protein
310	 55.17	0	339472..340332	+	286	83643223	-	HCH_00321	-	fructosamine-3-kinase
311	 55.49	0	340343..341290	-	315	83643224	-	HCH_00322	-	NADPH:quinone reductase and related Zn-dependent oxidoreductase
312	 54.01	0	341692..342639	+	315	83643225	-	HCH_00323	-	hypothetical protein
313	 53.95	0	342649..342939	-	96	83643226	-	HCH_00324	-	hypothetical protein
314	 55.34	0	343235..345202	+	655	83643227	-	HCH_00325	-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system
315	 55.08	0	345207..346595	+	462	83643228	-	HCH_00326	-	sigma 54-dependent transcriptional activator
316	 52.94	0	346644..347612	+	322	83643229	-	HCH_00327	-	aminopeptidase
317	 44.44	-1	347807..348220	+	137	83643230	-	HCH_00328	-	hypothetical protein
318	 46.87	-1	348496..348990	+	164	83643231	-	HCH_00329	-	hypothetical protein
319	 58.11	0	349080..349991	-	303	83643232	-	HCH_00330	-	permease
320	 54.76	0	350205..351749	+	514	83643233	-	HCH_00332	-	glutamate synthase domain-containing 2
321	 59.37	+1	351732..352046	-	104	83643234	-	HCH_00331	-	hypothetical protein
322	 53.79	0	352265..352831	-	188	83643235	-	HCH_00333	-	hypothetical protein
323	 50.51	0	352875..352973	-	32	83643236	-	HCH_00334	-	hypothetical protein
324	 55.63	0	353048..353998	+	316	83643237	-	HCH_00335	-	Fatty-acid desaturase
325	 55.95	0	353995..355254	+	419	83643238	-	HCH_00336	-	NAD/FAD-binding protein
326	 54.97	0	355238..356032	+	264	83643239	-	HCH_00337	-	hypothetical protein
327	 56.66	0	356077..357315	+	412	83643240	-	HCH_00338	-	cyclopropane fatty acid synthase -like protein
328	 59.10	+1	357306..358085	+	259	83643241	-	HCH_00339	-	hypothetical protein
329	 55.92	0	358082..359095	+	337	83643242	cfa	HCH_00340	-	cyclopropane fatty acid synthase -like protein
330	 40.38	-2	359319..359474	+	51	83643243	-	HCH_00341	-	hypothetical protein
331	 51.73	0	359628..360551	+	307	83643244	-	HCH_00342	-	hypothetical protein
332	 51.52	0	360751..361179	+	142	83643245	-	HCH_00343	-	hypothetical protein
333	 54.85	0	361185..363350	-	721	83643246	-	HCH_00344	-	signal transduction protein
334	 56.47	0	363579..364775	-	398	83643247	lamB	HCH_00345	-	maltoporin
335	 55.63	0	365104..366036	-	310	83643248	-	HCH_00346	-	DNA-binding transcriptional regulator HexR
336	 56.03	0	366227..367711	+	494	83643249	zwf	HCH_00347	-	glucose-6-phosphate 1-dehydrogenase
337	 60.73	+1	367704..368411	+	235	83643250	-	HCH_00348	-	6-phosphogluconolactonase
338	 58.41	0	368448..369101	+	217	83643251	eda	HCH_00349	-	2-keto-3-deoxy-6-phosphogluconate aldolase
339	 47.31	-1	369144..369236	-	30	83643252	-	HCH_00350	-	hypothetical protein
340	 59.71	+1	369233..370252	-	339	83643253	-	HCH_00351	-	hypothetical protein
341	 58.93	0	370301..371773	-	490	83643254	-	HCH_00352	-	hypothetical protein
342	 48.55	0	371714..371851	+	45	83643255	-	HCH_00353	-	hypothetical protein
343	 55.99	0	372031..373182	-	383	83643256	-	HCH_00354	-	hypothetical protein
344	 53.23	0	373436..374179	-	247	83643257	-	HCH_00355	-	amino acid ABC transporter periplasmic protein
345	 58.45	0	374262..376805	-	847	83643258	-	HCH_00356	-	extracellular nuclease
346	 37.98	-2	377073..377201	-	42	83643259	-	HCH_00357	-	hypothetical protein
347	 51.57	0	377294..377611	+	105	83643260	-	HCH_00358	-	endonuclease
348	 56.43	0	377668..378312	+	214	83643261	-	HCH_00359	-	putative protein-S-isoprenylcysteine methyltransferase
349	 55.87	0	378317..379279	-	320	83643262	-	HCH_00360	-	alpha/beta superfamily hydrolase/acyltransferase
350	 55.66	0	379489..380451	+	320	83643263	-	HCH_00361	-	uncharacterized low-complexity protein
351	 58.47	0	380549..381463	+	304	83643264	-	HCH_00362	-	hypothetical protein
352	 54.38	0	381489..382025	-	178	83643265	-	HCH_00363	-	restriction endonuclease
353	 47.44	-1	382129..382284	+	51	83643266	-	HCH_00364	-	hypothetical protein
354	 53.46	0	382347..383141	+	264	83643267	-	HCH_00365	-	hypothetical protein
355	 34.41	-2	383125..383310	+	61	83643268	-	HCH_00366	-	hypothetical protein
356	 36.86	-2	383596..384984	+	462	83643269	-	HCH_00368	-	response regulator
357	 46.83	-1	385262..385387	-	41	83643270	-	HCH_00369	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.