IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2947	 53.13	0	3199753..3200934	+	393	83645860	-	HCH_03104	-	polygalacturonase
2948	 58.87	0	3201073..3201534	+	153	83645861	-	HCH_03105	-	histone acetyltransferase HPA2-like acetyltransferase
2949	 59.95	+1	3201583..3202416	+	277	83645862	-	HCH_03106	-	HEAT repeat-containing protein
2950	 59.12	+1	3202641..3204230	-	529	83645863	-	HCH_03107	-	PAS/PAC domain-containing protein
2951	 60.83	+1	3204511..3204870	+	119	83645864	-	HCH_03108	-	hypothetical protein
2952	 46.24	-1	3205649..3205741	-	30	83645865	-	HCH_03109	-	hypothetical protein
2953	 51.64	0	3205919..3207076	-	385	83645866	-	HCH_03110	-	alpha/beta fold family hydrolase
2954	 50.92	0	3207378..3207758	+	126	83645867	-	HCH_03112	-	hypothetical protein
2955	 54.84	0	3207760..3207945	-	61	83645868	-	HCH_03113	-	hypothetical protein
2956	 59.46	+1	3208223..3208333	+	36	83645869	-	HCH_03114	-	hypothetical protein
2957	 56.17	0	3208317..3209678	+	453	83645870	-	HCH_03115	-	ABC-type sugar transport system, periplasmic component
2958	 56.82	0	3209830..3211881	+	683	83645871	-	HCH_03116	-	ABC-type sugar transport system, periplasmic component
2959	 43.59	-1	3211948..3212181	+	77	83645872	-	HCH_03117	-	hypothetical protein
2960	 43.33	-1	3212430..3213179	+	249	83645873	-	HCH_03118	-	hypothetical protein
2961	 60.62	+1	3213288..3214163	-	291	83645874	-	HCH_03119	-	transcriptional regulator
2962	 56.70	0	3214286..3214837	+	183	83645875	-	HCH_03121	-	putative NADPH-quinone reductase (modulator of drug activity B)
2963	 60.57	+1	3215166..3216953	-	595	83645876	-	HCH_03122	-	Xaa-Pro aminopeptidase
2964	 61.04	+1	3217080..3218075	-	331	83645877	-	HCH_03123	-	ABC-type oligopeptide transport system, ATPase component
2965	 62.02	+1	3218100..3219089	-	329	83645878	-	HCH_03124	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
2966	 58.95	0	3219160..3220092	-	310	83645879	-	HCH_03125	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
2967	 59.61	+1	3220102..3221022	-	306	83645880	-	HCH_03126	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
2968	 56.03	0	3221107..3222723	-	538	83645881	-	HCH_03127	-	ABC-type oligopeptide transport system, periplasmic component
2969	 42.44	-1	3222916..3223365	+	149	83645882	-	HCH_03128	-	hypothetical protein
2970	 50.66	0	3223529..3223909	+	126	83645883	-	HCH_03129	-	hypothetical protein
2971	 44.52	-1	3223996..3224460	+	154	83645884	-	HCH_03130	-	hypothetical protein
2972	 55.06	0	3224647..3226137	+	496	83645885	-	HCH_03131	-	sigma 54-dependent transcriptional activator
2973	 35.96	-2	3226279..3226392	+	37	83645886	-	HCH_03132	-	hypothetical protein
2974	 54.13	0	3226479..3227084	+	201	83645887	-	HCH_03133	-	putative protein-S-isoprenylcysteine methyltransferase
2975	 54.46	0	3227098..3228522	+	474	83645888	-	HCH_03134	-	7-keto-8-aminopelargonate synthetase and related enzyme
2976	 49.42	0	3228534..3229310	+	258	83645889	-	HCH_03135	-	metal-dependent hydrolase
2977	 57.77	0	3229438..3230100	-	220	83645890	-	HCH_03136	-	hypothetical protein
2978	 56.64	0	3230097..3230465	-	122	83645891	-	HCH_03137	-	hypothetical protein
2979	 55.86	0	3230497..3231162	-	221	83645892	-	HCH_03138	-	uncharacterized protein involved in formation of curli polymers
2980	 60.05	+1	3231290..3232468	-	392	83645893	-	HCH_03140	-	dehydrogenase
2981	 59.68	+1	3232476..3234335	-	619	83645894	-	HCH_03141	-	hypothetical protein
2982	 36.92	-2	3234861..3235865	+	334	83645895	-	HCH_03142	-	leucine-rich repeat-containing protein
2983	 40.13	-2	3235879..3237069	+	396	83645896	-	HCH_03143	-	hypothetical protein
2984	 38.47	-2	3237492..3238484	+	330	83645897	-	HCH_03144	-	leucine-rich repeat-containing protein
2985	 35.66	-2	3238574..3238702	+	42	83645898	-	HCH_03145	-	hypothetical protein
2986	 54.46	0	3238827..3239801	+	324	83645899	-	HCH_03146	-	Fatty-acid desaturase
2987	 45.28	-1	3240003..3240320	+	105	83645900	-	HCH_03147	-	anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
2988	 50.00	0	3240398..3242065	-	555	83645901	-	HCH_03148	-	response regulator
2989	 48.39	0	3242114..3242206	-	30	83645902	-	HCH_03149	-	hypothetical protein
2990	 47.75	0	3242277..3242720	-	147	83645903	-	HCH_03150	-	hypothetical protein
2991	 50.00	0	3242849..3242992	-	47	83645904	-	HCH_03151	-	hypothetical protein
2992	 48.23	0	3242912..3243052	+	46	83645905	-	HCH_03152	-	hypothetical protein
2993	 50.17	0	3243049..3243339	+	96	83645906	-	HCH_03154	-	hypothetical protein
2994	 56.54	0	3243334..3243975	-	213	83645907	-	HCH_03153	-	hypothetical protein
2995	 56.23	0	3243980..3245569	-	529	83645908	-	HCH_03155	-	hypothetical protein
2996	 57.89	0	3245591..3247801	-	736	83645909	-	HCH_03156	-	hypothetical protein
2997	 57.74	0	3247815..3249662	-	615	83645910	-	HCH_03157	-	hypothetical protein
2998	 53.10	0	3249760..3251550	-	596	83645911	-	HCH_03158	-	hypothetical protein
2999	 53.18	0	3252267..3252659	+	130	83645912	-	HCH_03159	-	hypothetical protein
3000	 41.18	-2	3252705..3253061	+	118	83645913	-	HCH_03160	-	hypothetical protein
3001	 51.19	0	3253394..3253813	+	139	83645914	-	HCH_03161	-	hypothetical protein
3002	 58.74	0	3253876..3255363	-	495	83645915	-	HCH_03162	-	NAD-dependent aldehyde dehydrogenase
3003	 58.16	0	3255385..3256266	-	293	83645916	dapA1	HCH_03163	-	dihydrodipicolinate synthase
3004	 55.22	0	3256608..3258179	-	523	83645917	-	HCH_03164	-	Pectate lyase
3005	 35.63	-2	3258347..3258520	-	57	83645918	-	HCH_03165	-	hypothetical protein
3006	 60.82	+1	3258619..3259866	-	415	83645919	-	HCH_03166	-	glycine/D-amino acid oxidases (deaminating)
3007	 58.68	0	3260026..3261027	+	333	83645920	-	HCH_03167	-	proline racemase
3008	 55.01	0	3261147..3261824	+	225	83645921	-	HCH_03168	-	transcriptional regulator
3009	 60.52	+1	3261921..3262685	-	254	83645922	-	HCH_03169	-	hypothetical protein
3010	 50.89	0	3262870..3263763	-	297	83645923	-	HCH_03170	-	AraC-type DNA-binding domain-containing protein
3011	 55.56	0	3263955..3264926	+	323	83645924	-	HCH_03171	-	hypothetical protein
3012	 47.86	0	3264943..3265059	-	38	83645925	-	HCH_03172	-	hypothetical protein
3013	 53.33	0	3265222..3265521	-	99	83645926	-	HCH_03173	-	hypothetical protein
3014	 58.88	0	3265576..3267039	-	487	83645927	-	HCH_03174	-	transcriptional regulator
3015	 45.48	-1	3267148..3267921	-	257	83645928	-	HCH_03175	-	AraC-type DNA-binding domain-containing protein
3016	 53.85	0	3268186..3268926	-	246	83645929	-	HCH_03176	-	hypothetical protein
3017	 54.81	0	3269448..3271151	-	567	83645930	-	HCH_03177	-	hypothetical protein
3018	 50.67	0	3271386..3271760	+	124	83645931	-	HCH_03178	-	hypothetical protein
3019	 53.33	0	3271741..3271935	+	64	83645932	-	HCH_03179	-	hypothetical protein
3020	 55.05	0	3271944..3272141	+	65	83645933	-	HCH_03180	-	hypothetical protein
3021	 57.72	0	3272167..3273933	+	588	83645934	-	HCH_03181	-	Serine/threonine protein kinase
3022	 57.09	0	3274026..3274829	-	267	83645935	-	HCH_03182	-	AraC-type DNA-binding domain-containing protein
3023	 59.80	+1	3275035..3275952	+	305	83645936	-	HCH_03183	-	threonine dehydratase
3024	 51.35	0	3276668..3277111	-	147	83645937	-	HCH_03184	-	hypothetical protein
3025	 53.58	0	3277108..3277680	-	190	83645938	-	HCH_03185	-	hypothetical protein
3026	 55.29	0	3277912..3278412	+	166	83645939	-	HCH_03186	-	hypothetical protein
3027	 38.39	-2	3278784..3279119	+	111	83645940	-	HCH_03187	-	hypothetical protein
3028	 56.42	0	3279583..3281163	-	526	83645941	-	HCH_03188	-	ABC transporter ATPase
3029	 54.92	0	3282094..3282621	-	175	83645942	-	HCH_03189	-	microcystin-dependent protein
3030	 54.26	0	3282643..3283158	-	171	83645943	-	HCH_03190	-	microcystin-dependent protein
3031	 51.09	0	3283548..3284369	+	273	83645944	-	HCH_03191	-	hypothetical protein
3032	 59.46	+1	3284433..3291107	+	2224	83645945	-	HCH_03194	-	outer membrane protein domain-containing protein
3033	 60.06	+1	3291104..3300889	+	3261	83645946	-	HCH_03195	-	RTX toxins and related Ca2+-binding protein
3034	 48.61	0	3300924..3301139	+	71	83645947	-	HCH_03196	-	transposase
3035	 41.94	-2	3301259..3301990	+	243	83645948	-	HCH_03197	-	hypothetical protein
3036	 56.84	0	3302116..3302685	-	189	83645949	-	HCH_03198	-	transcriptional regulator
3037	 54.38	0	3302813..3303463	+	216	83645950	-	HCH_03199	-	glutathione S-transferase
3038	 48.28	0	3303650..3303823	+	57	83645951	-	HCH_03201	-	hypothetical protein
3039	 48.25	0	3303813..3303926	-	37	83645952	-	HCH_03200	-	hypothetical protein
3040	 54.09	0	3303989..3304990	+	333	83645953	-	HCH_03202	-	hypothetical protein
3041	 50.76	0	3305137..3305463	+	108	83645954	-	HCH_03203	-	transcriptional regulator
3042	 50.70	0	3305460..3305960	+	166	83645955	-	HCH_03204	-	hypothetical protein
3043	 52.17	0	3306064..3306615	+	183	83645956	-	HCH_03205	-	Signal transduction histidine kinase, nitrogen specific
3044	 54.17	0	3306767..3306934	+	55	83645957	-	HCH_03206	-	hypothetical protein
3045	 58.86	0	3307050..3309227	+	725	83645958	katG	HCH_03207	-	catalase/peroxidase HPI
3046	 51.56	0	3309302..3309493	-	63	83645959	-	HCH_03208	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.