IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2900	 48.97	0	3155173..3155415	-	80	83645813	-	HCH_03057	-	hypothetical protein
2901	 53.75	0	3155655..3156761	-	368	83645814	-	HCH_03058	-	nucleoside-diphosphate-sugar epimerase
2902	 51.61	0	3156967..3157059	-	30	83645815	-	HCH_03059	-	hypothetical protein
2903	 58.41	0	3157038..3158429	-	463	83645816	-	HCH_03060	-	major facilitator superfamily permease
2904	 55.44	0	3158473..3159069	-	198	83645817	-	HCH_03061	-	putative intracellular protease/amidase
2905	 48.67	0	3159272..3159610	-	112	83645818	-	HCH_03062	-	hypothetical protein
2906	 46.39	-1	3159338..3159628	+	96	83645819	-	HCH_03063	-	hypothetical protein
2907	 45.65	-1	3159621..3159896	+	91	83645820	-	HCH_03064	-	hypothetical protein
2908	 56.07	0	3159963..3161858	-	631	83645821	-	HCH_03065	-	membrane protein related to metalloendopeptidase
2909	 53.78	0	3162240..3163139	-	299	83645822	-	HCH_03066	-	transcriptional regulator
2910	 54.50	0	3163228..3163605	+	125	83645823	-	HCH_03067	-	hypothetical protein
2911	 56.65	0	3163684..3164412	+	242	83645824	-	HCH_03068	-	lysophospholipase
2912	 45.65	-1	3164501..3164638	-	45	83645825	-	HCH_03069	-	hypothetical protein
2913	 51.41	0	3164607..3165602	+	331	83645826	-	HCH_03070	-	transposase
2914	 49.13	0	3165655..3166287	-	210	83645827	-	HCH_03071	-	phosphatase
2915	 53.51	0	3166444..3167796	-	450	83645828	-	HCH_03072	-	hypothetical protein
2916	 54.50	0	3168265..3169209	+	314	83645829	corA	HCH_03073	-	magnesium and cobalt transport protein CorA
2917	 57.03	0	3169340..3170107	+	255	83645830	deoC	HCH_03074	-	deoxyribose-phosphate aldolase
2918	 57.99	0	3170332..3171576	+	414	83645831	deoB	HCH_03075	-	phosphopentomutase
2919	 60.48	+1	3171669..3172379	+	236	83645832	deoD	HCH_03076	-	purine nucleoside phosphorylase
2920	 57.38	0	3172714..3173607	+	297	83645833	-	HCH_03077	-	transcriptional regulator
2921	 56.11	0	3173726..3174028	+	100	83645834	-	HCH_03078	-	hypothetical protein
2922	 50.22	0	3174088..3174762	+	224	83645835	gpmB	HCH_03079	-	fructose-2,6-bisphosphatase
2923	 57.48	0	3174940..3175494	-	184	83645836	-	HCH_03080	-	HD phosphohydrolase
2924	 60.69	+1	3175497..3176165	-	222	83645837	-	HCH_03081	-	phosphoserine phosphatase
2925	 62.31	+1	3176206..3177444	-	412	83645838	-	HCH_03082	-	glycine/D-amino acid oxidases (deaminating)
2926	 59.74	+1	3177470..3178393	-	307	83645839	-	HCH_03083	-	DMT family permease
2927	 62.49	+1	3178390..3179274	-	294	83645840	phnX	HCH_03084	-	phosphonoacetaldehyde hydrolase
2928	 59.10	+1	3179271..3180380	-	369	83645841	-	HCH_03085	-	Serine-pyruvate aminotransferase/ aspartate aminotransferase
2929	 58.83	0	3180434..3182155	-	573	83645842	-	HCH_03086	-	ABC-type Fe3+ transport system, permease component
2930	 60.76	+1	3182152..3183234	-	360	83645843	-	HCH_03087	-	ABC-type spermidine/putrescine transport system, ATPase components
2931	 58.31	0	3183734..3184762	-	342	83645844	-	HCH_03088	-	ABC-type Fe3+ transport system, periplasmic component
2932	 58.47	0	3184916..3185635	-	239	83645845	-	HCH_03089	-	transcriptional regulator
2933	 45.95	-1	3186033..3186254	-	73	83645846	-	HCH_03090	-	hypothetical protein
2934	 59.43	+1	3186238..3187563	+	441	83645847	-	HCH_03091	-	glycosyl hydrolase
2935	 57.32	0	3187597..3188922	-	441	83645848	-	HCH_03092	-	site-specific recombinase XerC
2936	 51.99	0	3189035..3189613	-	192	83645849	-	HCH_03093	-	hypothetical protein
2937	 50.88	0	3189812..3189925	-	37	83645850	-	HCH_03094	-	hypothetical protein
2938	 62.13	+1	3189983..3191305	-	440	83645851	xylB	HCH_03095	-	xylulokinase
2939	 53.15	0	3191716..3193032	+	438	83645852	-	HCH_03096	-	PAS/PAC domain-containing protein
2940	 56.57	0	3193105..3193203	+	32	83645853	-	HCH_03097	-	hypothetical protein
2941	 54.57	0	3193273..3193644	+	123	83645854	-	HCH_03098	-	hypothetical protein
2942	 39.69	-2	3194064..3194456	+	130	83645855	-	HCH_03099	-	hypothetical protein
2943	 42.74	-1	3194492..3194608	+	38	83645856	-	HCH_03100	-	hypothetical protein
2944	 43.69	-1	3194698..3195228	-	176	83645857	-	HCH_10012	-	ADP-ribose pyrophosphatase
2945	 59.57	+1	3195605..3196309	-	234	83645858	-	HCH_03101	-	hypothetical protein
2946	 60.35	+1	3196828..3199422	+	864	83645859	-	HCH_03103	-	thiol oxidoreductase
2947	 53.13	0	3199753..3200934	+	393	83645860	-	HCH_03104	-	polygalacturonase
2948	 58.87	0	3201073..3201534	+	153	83645861	-	HCH_03105	-	histone acetyltransferase HPA2-like acetyltransferase
2949	 59.95	+1	3201583..3202416	+	277	83645862	-	HCH_03106	-	HEAT repeat-containing protein
2950	 59.12	+1	3202641..3204230	-	529	83645863	-	HCH_03107	-	PAS/PAC domain-containing protein
2951	 60.83	+1	3204511..3204870	+	119	83645864	-	HCH_03108	-	hypothetical protein
2952	 46.24	-1	3205649..3205741	-	30	83645865	-	HCH_03109	-	hypothetical protein
2953	 51.64	0	3205919..3207076	-	385	83645866	-	HCH_03110	-	alpha/beta fold family hydrolase
2954	 50.92	0	3207378..3207758	+	126	83645867	-	HCH_03112	-	hypothetical protein
2955	 54.84	0	3207760..3207945	-	61	83645868	-	HCH_03113	-	hypothetical protein
2956	 59.46	+1	3208223..3208333	+	36	83645869	-	HCH_03114	-	hypothetical protein
2957	 56.17	0	3208317..3209678	+	453	83645870	-	HCH_03115	-	ABC-type sugar transport system, periplasmic component
2958	 56.82	0	3209830..3211881	+	683	83645871	-	HCH_03116	-	ABC-type sugar transport system, periplasmic component
2959	 43.59	-1	3211948..3212181	+	77	83645872	-	HCH_03117	-	hypothetical protein
2960	 43.33	-1	3212430..3213179	+	249	83645873	-	HCH_03118	-	hypothetical protein
2961	 60.62	+1	3213288..3214163	-	291	83645874	-	HCH_03119	-	transcriptional regulator
2962	 56.70	0	3214286..3214837	+	183	83645875	-	HCH_03121	-	putative NADPH-quinone reductase (modulator of drug activity B)
2963	 60.57	+1	3215166..3216953	-	595	83645876	-	HCH_03122	-	Xaa-Pro aminopeptidase
2964	 61.04	+1	3217080..3218075	-	331	83645877	-	HCH_03123	-	ABC-type oligopeptide transport system, ATPase component
2965	 62.02	+1	3218100..3219089	-	329	83645878	-	HCH_03124	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
2966	 58.95	0	3219160..3220092	-	310	83645879	-	HCH_03125	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
2967	 59.61	+1	3220102..3221022	-	306	83645880	-	HCH_03126	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
2968	 56.03	0	3221107..3222723	-	538	83645881	-	HCH_03127	-	ABC-type oligopeptide transport system, periplasmic component
2969	 42.44	-1	3222916..3223365	+	149	83645882	-	HCH_03128	-	hypothetical protein
2970	 50.66	0	3223529..3223909	+	126	83645883	-	HCH_03129	-	hypothetical protein
2971	 44.52	-1	3223996..3224460	+	154	83645884	-	HCH_03130	-	hypothetical protein
2972	 55.06	0	3224647..3226137	+	496	83645885	-	HCH_03131	-	sigma 54-dependent transcriptional activator
2973	 35.96	-2	3226279..3226392	+	37	83645886	-	HCH_03132	-	hypothetical protein
2974	 54.13	0	3226479..3227084	+	201	83645887	-	HCH_03133	-	putative protein-S-isoprenylcysteine methyltransferase
2975	 54.46	0	3227098..3228522	+	474	83645888	-	HCH_03134	-	7-keto-8-aminopelargonate synthetase and related enzyme
2976	 49.42	0	3228534..3229310	+	258	83645889	-	HCH_03135	-	metal-dependent hydrolase
2977	 57.77	0	3229438..3230100	-	220	83645890	-	HCH_03136	-	hypothetical protein
2978	 56.64	0	3230097..3230465	-	122	83645891	-	HCH_03137	-	hypothetical protein
2979	 55.86	0	3230497..3231162	-	221	83645892	-	HCH_03138	-	uncharacterized protein involved in formation of curli polymers
2980	 60.05	+1	3231290..3232468	-	392	83645893	-	HCH_03140	-	dehydrogenase
2981	 59.68	+1	3232476..3234335	-	619	83645894	-	HCH_03141	-	hypothetical protein
2982	 36.92	-2	3234861..3235865	+	334	83645895	-	HCH_03142	-	leucine-rich repeat-containing protein
2983	 40.13	-2	3235879..3237069	+	396	83645896	-	HCH_03143	-	hypothetical protein
2984	 38.47	-2	3237492..3238484	+	330	83645897	-	HCH_03144	-	leucine-rich repeat-containing protein
2985	 35.66	-2	3238574..3238702	+	42	83645898	-	HCH_03145	-	hypothetical protein
2986	 54.46	0	3238827..3239801	+	324	83645899	-	HCH_03146	-	Fatty-acid desaturase
2987	 45.28	-1	3240003..3240320	+	105	83645900	-	HCH_03147	-	anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
2988	 50.00	0	3240398..3242065	-	555	83645901	-	HCH_03148	-	response regulator
2989	 48.39	0	3242114..3242206	-	30	83645902	-	HCH_03149	-	hypothetical protein
2990	 47.75	0	3242277..3242720	-	147	83645903	-	HCH_03150	-	hypothetical protein
2991	 50.00	0	3242849..3242992	-	47	83645904	-	HCH_03151	-	hypothetical protein
2992	 48.23	0	3242912..3243052	+	46	83645905	-	HCH_03152	-	hypothetical protein
2993	 50.17	0	3243049..3243339	+	96	83645906	-	HCH_03154	-	hypothetical protein
2994	 56.54	0	3243334..3243975	-	213	83645907	-	HCH_03153	-	hypothetical protein
2995	 56.23	0	3243980..3245569	-	529	83645908	-	HCH_03155	-	hypothetical protein
2996	 57.89	0	3245591..3247801	-	736	83645909	-	HCH_03156	-	hypothetical protein
2997	 57.74	0	3247815..3249662	-	615	83645910	-	HCH_03157	-	hypothetical protein
2998	 53.10	0	3249760..3251550	-	596	83645911	-	HCH_03158	-	hypothetical protein
2999	 53.18	0	3252267..3252659	+	130	83645912	-	HCH_03159	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.