IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2391	 53.87	0	2574248..2575318	-	356	83645304	-	HCH_02512	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2392	 59.48	+1	2575328..2575480	-	50	83645305	-	HCH_02513	-	hypothetical protein
2393	 56.35	0	2576076..2577878	+	600	83645306	-	HCH_02514	-	hypothetical protein
2394	 57.62	0	2577882..2578301	+	139	83645307	-	HCH_02515	-	hypothetical protein
2395	 56.12	0	2578374..2579444	-	356	83645308	-	HCH_02516	-	alpha/beta superfamily hydrolase/acyltransferase
2396	 56.70	0	2579707..2580489	-	260	83645309	-	HCH_02517	-	enoyl-[acyl-carrier-protein] reductase (NADH)
2397	 34.31	-2	2580477..2580578	-	33	83645310	-	HCH_02518	-	hypothetical protein
2398	 51.95	0	2580747..2582336	-	529	83645311	-	HCH_02519	-	ABC-type uncharacterized transport system, duplicated ATPase component
2399	 44.28	-1	2582350..2583381	-	343	83645312	-	HCH_02520	-	ABC-type uncharacterized transport system, permease component
2400	 43.65	-1	2583385..2584344	-	319	83645313	-	HCH_02521	-	ABC-type uncharacterized transport system, permease component
2401	 51.53	0	2584474..2586276	-	600	83645314	-	HCH_02522	-	ABC-type oligopeptide transport system, periplasmic component
2402	 54.54	0	2586658..2588100	+	480	83645315	-	HCH_02523	-	signal transduction protein
2403	 55.56	0	2588241..2589986	-	581	83645316	-	HCH_02524	-	lytic murein transglycosylase
2404	 56.85	0	2590071..2590844	-	257	83645317	-	HCH_02525	-	Zn-dependent hydrolase
2405	 58.08	0	2591038..2591817	+	259	83645318	-	HCH_02526	-	SAM-dependent methyltransferase
2406	 55.03	0	2591814..2592260	+	148	83645319	rnhA	HCH_02527	-	ribonuclease HI
2407	 51.04	0	2592271..2592993	+	240	83645320	dnaQ	HCH_02528	-	DNA polymerase III, epsilon subunit
2408	 54.87	0	2593098..2594597	-	499	83645321	nhaB	HCH_02529	-	sodium/proton antiporter
2409	 54.65	0	2594962..2596659	+	565	83645322	-	HCH_02530	-	methyl-accepting chemotaxis protein
2410	 54.69	0	2596970..2597620	+	216	83645323	-	HCH_02531	-	cation/multidrug efflux pump
2411	 49.84	0	2597719..2598033	-	104	83645324	-	HCH_02532	-	putative sterol carrier protein
2412	 51.54	0	2598367..2599404	+	345	83645325	-	HCH_02534	-	putative periplasmic protease
2413	 53.99	0	2599514..2600515	+	333	83645326	-	HCH_02535	-	NADPH:quinone reductase and related Zn-dependent oxidoreductase
2414	 52.49	0	2600544..2601707	-	387	83645327	-	HCH_02536	-	Kef-type K+ transporter NAD-binding component
2415	 56.41	0	2601858..2602364	-	168	83645328	-	HCH_02537	-	hypothetical protein
2416	 54.39	0	2602348..2604009	-	553	83645329	-	HCH_02538	-	sulfite reductase, beta subunit (hemoprotein)
2417	 37.37	-2	2604080..2604178	+	32	83645330	-	HCH_02539	-	hypothetical protein
2418	 46.93	-1	2604254..2604481	+	75	83645331	-	HCH_02540	-	hypothetical protein
2419	 49.56	0	2604644..2604871	-	75	83645332	-	HCH_02541	-	hypothetical protein
2420	 56.04	0	2605128..2608835	-	1235	83645333	metH	HCH_02542	-	B12-dependent methionine synthase
2421	 50.78	0	2609070..2609648	+	192	83645334	-	HCH_02543	-	thioredoxin-like protein
2422	 53.57	0	2609727..2610734	-	335	83645335	-	HCH_02544	-	hypothetical protein
2423	 51.71	0	2610748..2611068	-	106	83645336	-	HCH_02545	-	dissimilatory sulfite reductase (desulfoviridin), gamma subunit
2424	 53.87	0	2611103..2611399	-	98	83645337	-	HCH_02546	-	hypothetical protein
2425	 50.81	0	2611456..2611827	-	123	83645338	-	HCH_02547	-	uncharacterized protein involved in the oxidation of intracellular sulfur
2426	 57.58	0	2611829..2612224	-	131	83645339	-	HCH_02548	-	hypothetical protein
2427	 53.74	0	2612276..2612971	-	231	83645340	-	HCH_02549	-	integral membrane protein, interacts with FtsH
2428	 46.32	-1	2613439..2615286	-	615	83645341	-	HCH_02550	-	hypothetical protein
2429	 54.20	0	2615562..2616572	+	336	83645342	trpS	HCH_02552	-	tryptophanyl-tRNA synthetase
2430	 57.78	0	2616607..2617596	+	329	83645343	-	HCH_02553	-	dehydrogenase and related protein
2431	 56.82	0	2617767..2619350	+	527	83645344	-	HCH_02554	-	osmosensitive K+ channel histidine kinase
2432	 58.12	0	2619370..2620773	-	467	83645345	-	HCH_02555	-	Trk-type K+ transport system, membrane components
2433	 57.83	0	2621068..2621712	+	214	83645346	-	HCH_02556	-	hypothetical protein
2434	 54.19	0	2621963..2622499	+	178	83645347	-	HCH_02557	-	hypothetical protein
2435	 55.42	0	2622516..2623982	+	488	83645348	-	HCH_02558	-	Signal transduction histidine kinase
2436	 49.66	0	2624056..2624502	+	148	83645349	-	HCH_02559	-	FOG: CheY-like receiver
2437	 55.12	0	2624514..2626193	+	559	83645350	-	HCH_02560	-	signal transduction protein
2438	 52.59	0	2626330..2628411	+	693	83645351	-	HCH_02561	-	Outer membrane receptor for ferrienterochelin and colicins
2439	 54.37	0	2628423..2629178	-	251	83645352	-	HCH_02562	-	short-chain alcohol dehydrogenase-like protein
2440	 57.95	0	2629235..2630026	-	263	83645353	-	HCH_02563	-	hypothetical protein
2441	 61.25	+1	2630023..2630853	-	276	83645354	-	HCH_02564	-	citrate synthase-like protein
2442	 58.12	0	2630813..2632567	-	584	83645355	-	HCH_02565	-	thiamine pyrophosphate-requiring enzyme
2443	 59.34	+1	2634352..2634870	+	172	83645356	-	HCH_02566	-	transposase
2444	 36.56	-2	2634972..2635250	-	92	83645357	-	HCH_02567	-	hypothetical protein
2445	 34.18	-2	2635334..2635921	-	195	83645358	-	HCH_02568	-	hypothetical protein
2446	 44.13	-1	2636416..2636730	+	104	83645359	-	HCH_02569	-	hypothetical protein
2447	 53.26	0	2637338..2637613	+	91	83645360	-	HCH_02570	-	hypothetical protein
2448	 49.55	0	2637540..2638322	+	260	83645361	-	HCH_02571	-	amino acid ABC transporter periplasmic protein
2449	 51.61	0	2638521..2639078	+	185	83645362	-	HCH_02572	-	guanosine polyphosphate pyrophosphohydrolase/synthetases
2450	 47.22	-1	2639106..2639357	-	83	83645363	-	HCH_02573	-	transposase
2451	 53.49	0	2639335..2639706	-	123	83645364	-	HCH_02574	-	transposase
2452	 54.11	0	2639799..2640005	-	68	83645365	-	HCH_02575	-	transposase
2453	 53.28	0	2640364..2640729	+	121	83645366	-	HCH_02576	-	hypothetical protein
2454	 54.71	0	2641470..2651921	+	3483	83645367	-	HCH_02583	-	RTX toxins and related Ca2+-binding protein
2455	 47.41	-1	2652257..2652391	+	44	83645368	-	HCH_02585	-	hypothetical protein
2456	 50.61	0	2652399..2652809	+	136	83645369	-	HCH_02586	-	hypothetical protein
2457	 52.73	0	2653232..2655283	+	683	83645370	-	HCH_02587	-	methyl-accepting chemotaxis protein
2458	 39.00	-2	2655362..2655820	+	152	83645371	-	HCH_02588	-	hypothetical protein
2459	 51.66	0	2656161..2657153	+	330	83645372	-	HCH_02590	-	thiamine biosynthesis lipoprotein
2460	 58.18	0	2657245..2658834	-	529	83645373	-	HCH_02591	-	hypothetical protein
2461	 55.62	0	2658879..2661350	-	823	83645374	-	HCH_02592	-	hypothetical protein
2462	 53.19	0	2661409..2662647	-	412	83645375	-	HCH_02593	-	hypothetical protein
2463	 54.62	0	2663089..2665794	+	901	83645376	-	HCH_02594	-	hypothetical protein
2464	 51.54	0	2665801..2666547	+	248	83645377	-	HCH_02595	-	hypothetical protein
2465	 54.45	0	2666517..2667212	+	231	83645378	-	HCH_02596	-	hypothetical protein
2466	 50.00	0	2667267..2667776	+	169	83645379	-	HCH_02597	-	Thiol-disulfide isomerase and thioredoxins
2467	 57.66	0	2667784..2668005	+	73	83645380	-	HCH_02598	-	hypothetical protein
2468	 51.45	0	2668007..2669143	+	378	83645381	-	HCH_02599	-	hypothetical protein
2469	 54.10	0	2669198..2669794	+	198	83645382	-	HCH_02600	-	hypothetical protein
2470	 53.82	0	2669832..2671754	+	640	83645383	-	HCH_02601	-	TPR repeat-containing protein
2471	 55.36	0	2671751..2674642	+	963	83645384	-	HCH_02602	-	hypothetical protein
2472	 55.07	0	2674626..2675237	+	203	83645385	-	HCH_02603	-	TPR repeat-containing protein
2473	 56.27	0	2675252..2675578	+	108	83645386	-	HCH_02604	-	hypothetical protein
2474	 56.63	0	2675674..2676888	-	404	83645387	-	HCH_02605	-	membrane-bound lytic murein transglycosylase B
2475	 52.22	0	2677033..2677212	-	59	83645388	-	HCH_02606	-	hypothetical protein
2476	 53.38	0	2677437..2677910	+	157	83645389	-	HCH_02607	-	hypothetical protein
2477	 54.81	0	2677971..2678780	-	269	83645390	-	HCH_02608	-	rRNA methylase
2478	 53.73	0	2678773..2679939	-	388	83645391	-	HCH_02609	-	acetyltransferase
2479	 51.46	0	2680098..2681570	+	490	83645392	-	HCH_02610	-	glutathione synthase/ribosomal protein S6 modification glutaminyl transferase
2480	 59.19	+1	2682000..2684207	+	735	83645393	dnaX	HCH_02613	-	DNA polymerase III subunits gamma and tau
2481	 47.71	-1	2684212..2684538	+	108	83645394	-	HCH_02614	-	hypothetical protein
2482	 55.61	0	2684559..2685164	+	201	83645395	recR	HCH_02615	-	recombination protein RecR
2483	 55.39	0	2685157..2686353	+	398	83645396	rnd	HCH_02616	-	ribonuclease D
2484	 50.78	0	2686408..2686728	+	106	83645397	-	HCH_02617	-	hypothetical protein
2485	 54.73	0	2686721..2687164	+	147	83645398	-	HCH_02618	-	hypothetical protein
2486	 57.53	0	2687201..2687572	+	123	83645399	-	HCH_02619	-	hypothetical protein
2487	 55.11	0	2687775..2690024	+	749	83645400	-	HCH_02620	-	von Willebrand factor type A (vWA) domain-containing protein
2488	 55.22	0	2690038..2690841	+	267	83645401	-	HCH_02621	-	glutamine amidotransferase
2489	 56.83	0	2690913..2691878	-	321	83645402	cysK	HCH_02622	-	cysteine synthase A
2490	 53.86	0	2692042..2692884	+	280	83645403	-	HCH_02623	-	MoxR-like ATPase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.