IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2319	 56.07	0	2489786..2490427	+	213	83645232	trpF	HCH_02435	-	phosphoribosylanthranilate isomerase
2320	 56.37	0	2490399..2491631	+	410	83645233	trpB1	HCH_02436	-	tryptophan synthase subunit beta
2321	 56.34	0	2491644..2492447	+	267	83645234	trpA1	HCH_02437	-	tryptophan synthase subunit alpha
2322	 55.52	0	2492468..2493400	+	310	83645235	accD	HCH_02438	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
2323	 57.08	0	2493446..2494738	+	430	83645236	folC	HCH_02439	-	folylpolyglutamate synthase
2324	 53.28	0	2494816..2495592	+	258	83645237	dedD	HCH_02440	-	DedD protein
2325	 51.94	0	2495691..2496179	+	162	83645238	-	HCH_02441	-	uncharacterized membrane protein, required for colicin V production
2326	 56.02	0	2496224..2497744	+	506	83645239	purF	HCH_02442	-	amidophosphoribosyltransferase
2327	 58.01	0	2497946..2499169	+	407	83645240	metZ	HCH_02443	-	O-succinylhomoserine sulfhydrylase
2328	 58.33	0	2499166..2499273	+	35	83645241	-	HCH_02444	-	hypothetical protein
2329	 56.24	0	2499412..2501904	+	830	83645242	ftsK	HCH_02445	-	cell division protein FtsK
2330	 52.22	0	2501910..2502539	+	209	83645243	lolA	HCH_02446	-	outer-membrane lipoprotein carrier protein
2331	 57.68	0	2502536..2503882	+	448	83645244	-	HCH_02447	-	recombination factor protein RarA
2332	 53.39	0	2503910..2504293	+	127	83645245	crcB	HCH_02448	-	hypothetical protein
2333	 56.23	0	2504317..2505600	+	427	83645246	serS	HCH_02449	-	seryl-tRNA synthetase
2334	 56.74	0	2505609..2507018	+	469	83645247	cysG	HCH_02450	-	uroporphyrinogen-III methylase
2335	 54.59	0	2507075..2507281	-	68	83645248	-	HCH_02451	-	hypothetical protein
2336	 59.61	+1	2507396..2508472	-	358	83645249	modC	HCH_02452	-	molybdate ABC transporter, ATP-binding protein
2337	 59.02	0	2508469..2509161	-	230	83645250	modB	HCH_02453	-	molybdate ABC transporter, permease protein
2338	 57.29	0	2509224..2509991	-	255	83645251	modA	HCH_02454	-	molybdate ABC transporter, periplasmic molybdate-binding protein
2339	 59.83	+1	2509990..2510106	+	38	83645252	-	HCH_02456	-	hypothetical protein
2340	 59.22	+1	2510100..2510918	-	272	83645253	modE	HCH_02455	-	molybdenum-binding protein
2341	 55.58	0	2511170..2512513	+	447	83645254	-	HCH_02457	-	FHA domain-containing protein
2342	 54.42	0	2512752..2514449	+	565	83645255	-	HCH_02458	-	methyl-accepting chemotaxis protein
2343	 53.94	0	2514728..2515984	+	418	83645256	-	HCH_02459	-	HD-GYP domain-containing protein
2344	 56.97	0	2515997..2516398	-	133	83645257	-	HCH_02460	-	hypothetical protein
2345	 57.14	0	2516916..2517104	-	62	83645258	-	HCH_02461	-	hypothetical protein
2346	 59.46	+1	2517124..2517831	-	235	83645259	-	HCH_02462	-	response regulator
2347	 47.75	0	2518392..2518502	+	36	83645260	-	HCH_02463	-	hypothetical protein
2348	 57.68	0	2518537..2521350	+	937	83645261	-	HCH_02464	-	cellulase
2349	 57.89	0	2521463..2524321	+	952	83645262	-	HCH_02465	-	RTX toxins and related Ca2+-binding protein
2350	 53.57	0	2524462..2525469	-	335	83645263	-	HCH_02466	-	transcriptional regulator
2351	 57.65	0	2525768..2526688	+	306	83645264	-	HCH_02467	-	ABC-type sugar transport system, periplasmic component
2352	 56.71	0	2526952..2528457	+	501	83645265	-	HCH_02469	-	ABC-type sugar transport system, ATPase component
2353	 59.27	+1	2528450..2529436	+	328	83645266	-	HCH_02470	-	ribose/xylose/arabinose/galactoside ABC-type transporter permease
2354	 58.68	0	2529505..2530581	+	358	83645267	-	HCH_02471	-	threonine dehydrogenase and related Zn-dependent dehydrogenase
2355	 61.51	+1	2530593..2532143	+	516	83645268	-	HCH_02472	-	sugar (pentulose and hexulose) kinase
2356	 59.24	+1	2532148..2533116	+	322	83645269	tal2	HCH_02473	-	transaldolase B
2357	 55.26	0	2533134..2533247	+	37	83645270	-	HCH_02474	-	hypothetical protein
2358	 58.03	0	2533274..2534605	-	443	83645271	-	HCH_02475	-	cytochrome c peroxidase
2359	 56.30	0	2534614..2535636	-	340	83645272	-	HCH_02476	-	hypothetical protein
2360	 57.20	0	2535762..2537906	-	714	83645273	-	HCH_02477	-	regulatory P domain-containing protein
2361	 55.89	0	2538445..2540661	-	738	83645274	-	HCH_02479	-	Zinc metalloprotease (elastase)
2362	 51.26	0	2541805..2542122	+	105	83645275	-	HCH_02480	-	ferredoxin
2363	 48.70	0	2542840..2543802	+	320	83645276	-	HCH_02482	-	transcriptional regulator
2364	 58.77	0	2543936..2544859	-	307	83645277	-	HCH_02484	-	DMT family permease
2365	 48.92	0	2545007..2545468	+	153	83645278	-	HCH_02485	-	transcriptional regulator
2366	 36.27	-2	2545601..2545906	+	101	83645279	-	HCH_02486	-	hypothetical protein
2367	 45.93	-1	2546393..2546662	+	89	83645280	-	HCH_02487	-	hypothetical protein
2368	 37.82	-2	2546690..2547313	-	207	83645281	-	HCH_10009	-	BamHI-like type II restriction endonuclease
2369	 40.81	-2	2547622..2548812	+	396	83645282	-	HCH_02488	-	BamHI-like site-specific methyltransferase
2370	 45.10	-1	2548822..2548923	+	33	83645283	-	HCH_02490	-	hypothetical protein
2371	 57.06	0	2548889..2551219	-	776	83645284	-	HCH_02489	-	RND superfamily exporter
2372	 58.51	0	2551234..2552496	-	420	83645285	-	HCH_02491	-	hypothetical protein
2373	 53.45	0	2552520..2553374	-	284	83645286	-	HCH_02492	-	hypothetical protein
2374	 58.70	0	2553424..2554038	-	204	83645287	-	HCH_02493	-	hypothetical protein
2375	 57.46	0	2554263..2554979	+	238	83645288	-	HCH_02494	-	nitroreductase
2376	 59.63	+1	2555068..2556048	+	326	83645289	-	HCH_02496	-	nucleoside-diphosphate sugar epimerase
2377	 61.46	+1	2556076..2557476	+	466	83645290	-	HCH_02498	-	enoyl-CoA hydratase/carnithine racemase
2378	 56.57	0	2557481..2558668	+	395	83645291	-	HCH_02499	-	hypothetical protein
2379	 54.99	0	2558706..2560238	+	510	83645292	-	HCH_02500	-	dehydrogenase
2380	 59.45	+1	2560270..2563569	+	1099	83645293	-	HCH_02501	-	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
2381	 56.77	0	2563706..2564473	+	255	83645294	-	HCH_02502	-	hypothetical protein
2382	 55.97	0	2564545..2565591	+	348	83645295	-	HCH_02503	-	Zn-dependent hydrolase
2383	 58.57	0	2565596..2566633	+	345	83645296	-	HCH_02504	-	nucleoside-diphosphate-sugar epimerase
2384	 51.85	0	2566673..2567023	+	116	83645297	-	HCH_02505	-	hypothetical protein
2385	 51.13	0	2567062..2567415	+	117	83645298	-	HCH_02506	-	hypothetical protein
2386	 58.70	0	2567624..2569003	+	459	83645299	-	HCH_02507	-	putative chaperone
2387	 53.33	0	2569361..2569555	-	64	83645300	-	HCH_02508	-	hypothetical protein
2388	 57.26	0	2569703..2571478	-	591	83645301	-	HCH_02509	-	ABC-type sugar transport system, periplasmic component
2389	 55.06	0	2571755..2573287	+	510	83645302	-	HCH_02510	-	sulfate permease family protein
2390	 59.14	+1	2573287..2574150	+	287	83645303	-	HCH_02511	-	universal stress protein UspA-like nucleotide-binding protein
2391	 53.87	0	2574248..2575318	-	356	83645304	-	HCH_02512	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2392	 59.48	+1	2575328..2575480	-	50	83645305	-	HCH_02513	-	hypothetical protein
2393	 56.35	0	2576076..2577878	+	600	83645306	-	HCH_02514	-	hypothetical protein
2394	 57.62	0	2577882..2578301	+	139	83645307	-	HCH_02515	-	hypothetical protein
2395	 56.12	0	2578374..2579444	-	356	83645308	-	HCH_02516	-	alpha/beta superfamily hydrolase/acyltransferase
2396	 56.70	0	2579707..2580489	-	260	83645309	-	HCH_02517	-	enoyl-[acyl-carrier-protein] reductase (NADH)
2397	 34.31	-2	2580477..2580578	-	33	83645310	-	HCH_02518	-	hypothetical protein
2398	 51.95	0	2580747..2582336	-	529	83645311	-	HCH_02519	-	ABC-type uncharacterized transport system, duplicated ATPase component
2399	 44.28	-1	2582350..2583381	-	343	83645312	-	HCH_02520	-	ABC-type uncharacterized transport system, permease component
2400	 43.65	-1	2583385..2584344	-	319	83645313	-	HCH_02521	-	ABC-type uncharacterized transport system, permease component
2401	 51.53	0	2584474..2586276	-	600	83645314	-	HCH_02522	-	ABC-type oligopeptide transport system, periplasmic component
2402	 54.54	0	2586658..2588100	+	480	83645315	-	HCH_02523	-	signal transduction protein
2403	 55.56	0	2588241..2589986	-	581	83645316	-	HCH_02524	-	lytic murein transglycosylase
2404	 56.85	0	2590071..2590844	-	257	83645317	-	HCH_02525	-	Zn-dependent hydrolase
2405	 58.08	0	2591038..2591817	+	259	83645318	-	HCH_02526	-	SAM-dependent methyltransferase
2406	 55.03	0	2591814..2592260	+	148	83645319	rnhA	HCH_02527	-	ribonuclease HI
2407	 51.04	0	2592271..2592993	+	240	83645320	dnaQ	HCH_02528	-	DNA polymerase III, epsilon subunit
2408	 54.87	0	2593098..2594597	-	499	83645321	nhaB	HCH_02529	-	sodium/proton antiporter
2409	 54.65	0	2594962..2596659	+	565	83645322	-	HCH_02530	-	methyl-accepting chemotaxis protein
2410	 54.69	0	2596970..2597620	+	216	83645323	-	HCH_02531	-	cation/multidrug efflux pump
2411	 49.84	0	2597719..2598033	-	104	83645324	-	HCH_02532	-	putative sterol carrier protein
2412	 51.54	0	2598367..2599404	+	345	83645325	-	HCH_02534	-	putative periplasmic protease
2413	 53.99	0	2599514..2600515	+	333	83645326	-	HCH_02535	-	NADPH:quinone reductase and related Zn-dependent oxidoreductase
2414	 52.49	0	2600544..2601707	-	387	83645327	-	HCH_02536	-	Kef-type K+ transporter NAD-binding component
2415	 56.41	0	2601858..2602364	-	168	83645328	-	HCH_02537	-	hypothetical protein
2416	 54.39	0	2602348..2604009	-	553	83645329	-	HCH_02538	-	sulfite reductase, beta subunit (hemoprotein)
2417	 37.37	-2	2604080..2604178	+	32	83645330	-	HCH_02539	-	hypothetical protein
2418	 46.93	-1	2604254..2604481	+	75	83645331	-	HCH_02540	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.