IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
188	 56.33	0	205288..206022	+	244	83643101	-	HCH_00194	-	transcriptional regulator
189	 55.64	0	206019..206435	+	138	83643102	-	HCH_00195	-	hypothetical protein
190	 59.30	+1	206439..207008	+	189	83643103	tehB	HCH_00196	-	SAM-dependent methyltransferase
191	 59.02	0	207084..208508	-	474	83643104	-	HCH_00197	-	hypothetical protein
192	 57.12	0	208633..209208	+	191	83643105	-	HCH_00198	-	hypothetical protein
193	 58.23	0	209227..210909	-	560	83643106	-	HCH_00199	-	alpha-glucosidase
194	 55.15	0	211238..211645	+	135	83643107	-	HCH_00200	-	hypothetical protein
195	 57.85	0	211759..213039	+	426	83643108	-	HCH_00201	-	ABC-type sugar transport system, periplasmic component
196	 59.15	+1	213099..214016	+	305	83643109	-	HCH_00203	-	ABC-type sugar transport system, permease components
197	 58.87	0	214018..214863	+	281	83643110	-	HCH_00204	-	ABC-type sugar transport system, permease component
198	 57.79	0	214918..216540	+	540	83643111	-	HCH_00205	-	alpha-glucosidase
199	 59.57	+1	216614..217642	+	342	83643112	-	HCH_00206	-	ABC-type sugar transport system, ATPase components
200	 56.82	0	217682..218524	+	280	83643113	-	HCH_00207	-	AraC-type DNA-binding domain-containing protein
201	 52.88	0	218599..218910	+	103	83643114	-	HCH_00208	-	hypothetical protein
202	 56.84	0	218907..220433	-	508	83643115	-	HCH_00209	-	Signal transduction histidine kinase
203	 56.44	0	220462..221625	-	387	83643116	-	HCH_00210	-	ABC-type sugar transport system, periplasmic component
204	 51.93	0	221738..222307	-	189	83643117	-	HCH_00211	-	elongation factor P
205	 58.86	0	222445..224289	+	614	83643118	-	HCH_00212	-	carbamoyl transferase
206	 54.14	0	224282..224704	+	140	83643119	-	HCH_00213	-	hypothetical protein
207	 51.63	0	224704..224856	+	50	83643120	-	HCH_00214	-	hypothetical protein
208	 58.45	0	224901..225740	-	279	83643121	-	HCH_00215	-	Pirin-related protein
209	 58.64	0	225872..226768	+	298	83643122	-	HCH_00217	-	transcriptional regulator
210	 59.53	+1	226828..228285	+	485	83643123	pepD	HCH_00218	-	putative aminoacyl-histidine dipeptidase PepD
211	 55.03	0	228374..228820	-	148	83643124	-	HCH_00219	-	CBS domain-containing protein
212	 47.06	-1	229039..229140	-	33	83643125	-	HCH_00220	-	hypothetical protein
213	 47.75	0	229046..229156	-	36	83643126	-	HCH_00221	-	hypothetical protein
214	 61.04	+1	229223..231160	-	645	83643127	recD	HCH_00222	-	exodeoxyribonuclease V, alpha subunit
215	 59.53	+1	231157..234702	-	1181	83643128	recB	HCH_00223	-	exodeoxyribonuclease V, beta subunit
216	 61.73	+1	234699..237920	-	1073	83643129	recC	HCH_00224	-	exodeoxyribonuclease V, gamma subunit
217	 56.10	0	238391..241372	+	993	83643130	-	HCH_00225	-	carboxypeptidase
218	 54.98	0	241820..242683	+	287	83643131	-	HCH_00226	-	nucleoside-binding outer membrane protein
219	 52.38	0	242703..242828	-	41	83643132	-	HCH_00227	-	hypothetical protein
220	 56.24	0	242812..243300	+	162	83643133	-	HCH_00228	-	histone acetyltransferase HPA2-like acetyltransferase
221	 57.30	0	243407..244057	+	216	83643134	-	HCH_00229	-	GTPase SAR1 and related small G protein
222	 58.08	0	244081..245268	+	395	83643135	-	HCH_00230	-	Signal transduction histidine kinase regulating C4-dicarboxylate transport system
223	 54.47	0	245276..247513	+	745	83643136	-	HCH_00231	-	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
224	 36.64	-2	247730..249121	+	463	83643137	-	HCH_00232	-	hypothetical protein
225	 61.42	+1	249657..250247	-	196	83643138	-	HCH_00233	-	hypothetical protein
226	 54.05	0	250570..250902	-	110	83643139	-	HCH_00234	-	hypothetical protein
227	 58.66	0	251020..252156	-	378	83643140	-	HCH_00235	-	ABC-type multidrug transport system, permease component
228	 58.17	0	252150..253079	-	309	83643141	-	HCH_00236	-	ABC-type multidrug transport system, ATPase component
229	 61.20	+1	253072..254040	-	322	83643142	-	HCH_00237	-	membrane-fusion protein
230	 59.68	+1	254277..254720	+	147	83643143	-	HCH_00238	-	hypothetical protein
231	 61.38	+1	254793..255833	+	346	83643144	selD	HCH_00239	-	selenide, water dikinase
232	 59.30	+1	255834..256973	+	379	83643145	-	HCH_00240	-	tRNA 2-selenouridine synthase
233	 61.41	+1	257016..258365	+	449	83643146	-	HCH_00241	-	hypothetical protein
234	 56.30	0	258367..258993	-	208	83643147	-	HCH_00242	-	hypothetical protein
235	 51.28	0	259155..259583	+	142	83643148	-	HCH_00243	-	hypothetical protein
236	 55.28	0	259621..260472	-	283	83643149	-	HCH_00244	-	hypothetical protein
237	 55.45	0	260695..261336	+	213	83643150	-	HCH_00245	-	hypothetical protein
238	 51.39	0	261410..261985	-	191	83643151	-	HCH_00246	-	hypothetical protein
239	 49.20	0	262600..263097	-	165	83643152	-	HCH_00247	-	hypothetical protein
240	 48.48	0	263084..263314	+	76	83643153	-	HCH_00250	-	hypothetical protein
241	 47.73	0	263304..263831	-	175	83643154	-	HCH_00249	-	hypothetical protein
242	 59.57	+1	264029..267607	-	1192	83643155	-	HCH_00252	-	type II secretory pathway pullulanase PulA
243	 59.44	+1	267927..269186	-	419	83643156	-	HCH_00253	-	ABC-type sugar transport system, periplasmic component
244	 51.85	0	269179..269313	-	44	83643157	-	HCH_00254	-	hypothetical protein
245	 54.39	0	269513..269626	-	37	83643158	-	HCH_00255	-	hypothetical protein
246	 59.35	+1	269705..270292	-	195	83643159	-	HCH_00256	-	nicotinamidase-like amidase
247	 61.08	+1	270446..271447	+	333	83643160	-	HCH_00257	-	transcriptional regulator
248	 59.65	+1	271454..272878	-	474	83643161	-	HCH_00258	-	signal transduction protein
249	 60.58	+1	272995..273897	-	300	83643162	-	HCH_00259	-	dTDP-4-dehydrorhamnose reductase-like protein
250	 59.12	+1	274030..274956	+	308	83643163	-	HCH_00260	-	DMT family permease
251	 59.66	+1	275099..275854	+	251	83643164	-	HCH_00261	-	hypothetical protein
252	 55.07	0	275851..276816	+	321	83643165	-	HCH_00262	-	uncharacterized membrane protein
253	 57.72	0	276803..278389	+	528	83643166	-	HCH_00263	-	periplasmic protease
254	 55.39	0	278376..279608	+	410	83643167	-	HCH_00264	-	hypothetical protein
255	 59.96	+1	279605..280588	+	327	83643168	-	HCH_00265	-	MoxR-like ATPase
256	 58.59	0	280585..281958	+	457	83643169	-	HCH_00266	-	hypothetical protein
257	 53.88	0	282030..282803	+	257	83643170	-	HCH_00267	-	hypothetical protein
258	 62.95	+1	282822..283709	-	295	83643171	-	HCH_00268	-	hypothetical protein
259	 57.20	0	283797..285539	-	580	83643172	-	HCH_00269	-	glycosidase
260	 57.70	0	285655..286881	-	408	83643173	-	HCH_00270	-	cell wall biosynthesis glycosyltransferase
261	 56.63	0	286952..287788	-	278	83643174	-	HCH_00271	-	mannosyl-3-phosphoglycerate phosphatase
262	 45.76	-1	288123..288299	-	58	83643175	-	HCH_00272	-	hypothetical protein
263	 54.70	0	288365..289609	+	414	83643176	-	HCH_00273	-	HD-GYP domain-containing protein
264	 58.51	0	289621..290919	+	432	83643177	-	HCH_00274	-	FOG EAL domain-containing protein
265	 59.16	+1	290940..291938	-	332	83643178	gap1	HCH_00275	-	glyceraldehyde-3-phosphate dehydrogenase, type I
266	 59.08	+1	292067..294295	-	742	83643179	-	HCH_00276	-	hypothetical protein
267	 54.09	0	294368..295138	-	256	83643180	-	HCH_00277	-	amino acid ABC transporter periplasmic protein
268	 55.79	0	295368..296084	-	238	83643181	fkpA	HCH_00278	-	FKBP-type peptidyl-prolyl cis-trans isomerases 1
269	 57.73	0	296211..296624	-	137	83643182	-	HCH_00279	-	hypothetical protein
270	 53.72	0	296719..297282	-	187	83643183	-	HCH_00280	-	hypothetical protein
271	 57.67	0	297331..299241	+	636	83643184	-	HCH_00281	-	ABC transporter ATPase
272	 55.28	0	299354..300460	+	368	83643185	-	HCH_00282	-	ABC-type branched-chain amino acid transport system, periplasmic component
273	 56.07	0	300563..302110	-	515	83643186	ppx	HCH_00283	-	exopolyphosphatase
274	 48.62	0	302392..302718	+	108	83643187	trx1	HCH_00284	-	thioredoxin
275	 53.29	0	302921..304183	+	420	83643188	rho	HCH_00285	-	transcription termination factor Rho
276	 56.48	0	304311..305783	+	490	83643189	ubiD	HCH_00286	-	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases
277	 56.09	0	305794..306795	+	333	83643190	-	HCH_00287	-	CDP-6-deoxy-delta-3,4-glucoseen reductase
278	 56.59	0	306817..308067	-	416	83643191	hemY	HCH_00288	-	uncharacterized enzyme of heme biosynthesis
279	 56.05	0	308064..309467	-	467	83643192	hemX	HCH_00289	-	uncharacterized enzyme of heme biosynthesis
280	 57.60	0	309540..310322	-	260	83643193	-	HCH_00290	-	uroporphyrinogen-III synthase
281	 59.83	+1	310306..311241	-	311	83643194	hemC	HCH_00291	-	porphobilinogen deaminase
282	 58.30	0	311362..312102	-	246	83643195	algR	HCH_00292	-	alginate biosynthesis regulatory protein AlgR-like protein
283	 56.76	0	312143..313252	-	369	83643196	-	HCH_00293	-	signal transduction protein
284	 57.07	0	313368..314774	+	468	83643197	argH	HCH_00294	-	argininosuccinate lyase
285	 55.76	0	314897..317812	+	971	83643198	cyaA	HCH_00295	-	adenylate cyclase
286	 57.55	0	318180..319451	+	423	83643199	lysA	HCH_00297	-	diaminopimelate decarboxylase
287	 54.03	0	319464..320294	+	276	83643200	dapF	HCH_00298	-	diaminopimelate epimerase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.