IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2260	 37.58	-2	2419317..2420681	-	454	83645173	-	HCH_02362	-	hypothetical protein
2261	 47.09	-1	2422856..2423713	-	285	83645174	-	HCH_02365	-	amino acid ABC transporter periplasmic protein
2262	 55.48	0	2423931..2424386	+	151	83645175	-	HCH_02367	-	hypothetical protein
2263	 43.14	-1	2424432..2424737	-	101	83645176	-	HCH_02368	-	hypothetical protein
2264	 47.31	-1	2425015..2425515	-	166	83645177	-	HCH_02369	-	hypothetical protein
2265	 46.67	-1	2425678..2425932	+	84	83645178	-	HCH_02370	-	hypothetical protein
2266	 54.69	0	2426051..2428045	+	664	83645179	-	HCH_02371	-	GGDEF domain-containing protein
2267	 49.81	0	2428312..2428827	+	171	83645180	-	HCH_02372	-	hypothetical protein
2268	 52.65	0	2428955..2429539	+	194	83645181	clpP2	HCH_02373	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2269	 48.72	0	2430025..2431194	+	389	83645182	-	HCH_02374	-	hypothetical protein
2270	 43.79	-1	2431294..2431599	-	101	83645183	comEA	HCH_02375	-	DNA uptake protein and related DNA-binding protein
2271	 40.83	-2	2431628..2431747	-	39	83645184	-	HCH_02376	-	hypothetical protein
2272	 43.39	-1	2431825..2432172	+	115	83645185	-	HCH_02377	-	hypothetical protein
2273	 50.10	0	2432397..2433887	+	496	83645186	-	HCH_02378	-	hypothetical protein
2274	 48.17	0	2433956..2436928	+	990	83645187	-	HCH_02380	-	polysaccharide export periplasmic protein
2275	 42.56	-1	2437052..2438005	+	317	83645188	-	HCH_02381	-	uncharacterized protein involved in exopolysaccharide biosynthesis
2276	 46.64	-1	2438112..2439944	+	610	83645189	asnB2	HCH_02383	-	asparagine synthase (glutamine-hydrolyzing)
2277	 44.60	-1	2439925..2440785	+	286	83645190	-	HCH_02385	-	SAM-dependent methyltransferase
2278	 37.86	-2	2440790..2442115	+	441	83645191	-	HCH_02386	-	hypothetical protein
2279	 44.60	-1	2442115..2443872	+	585	83645192	-	HCH_02387	-	carbamoyl transferase
2280	 39.04	-2	2443906..2444658	+	250	83645193	-	HCH_02388	-	hypothetical protein
2281	 38.09	-2	2444661..2446070	+	469	83645194	-	HCH_02390	-	hypothetical protein
2282	 40.53	-2	2446081..2447178	+	365	83645195	-	HCH_02393	-	glycosyltransferase
2283	 45.77	-1	2447168..2448100	+	310	83645196	-	HCH_02394	-	cell wall biosynthesis glycosyltransferase
2284	 47.76	0	2448093..2448827	+	244	83645197	-	HCH_02395	-	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benz oquinol methylase
2285	 46.78	-1	2449082..2450152	+	356	83645198	-	HCH_02396	-	glycosyltransferase
2286	 48.47	0	2450213..2452201	+	662	83645199	asnB3	HCH_02398	-	asparagine synthase (glutamine-hydrolyzing)
2287	 46.00	-1	2452253..2454250	+	665	83645200	asnB4	HCH_02399	-	asparagine synthase (glutamine-hydrolyzing)
2288	 44.63	-1	2454263..2455369	+	368	83645201	-	HCH_02400	-	glycosyltransferase
2289	 46.42	-1	2455743..2456804	+	353	83645202	-	HCH_02401	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
2290	 52.18	0	2456916..2457833	+	305	83645203	-	HCH_02402	-	nucleoside-diphosphate-sugar epimerase
2291	 49.68	0	2458056..2458985	+	309	83645204	fabH	HCH_02403	-	3-oxoacyl-[acyl-carrier-protein] synthase III
2292	 47.98	0	2459147..2460286	+	379	83645205	rfe	HCH_02404	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
2293	 44.96	-1	2460666..2462204	+	512	83645206	-	HCH_02405	-	nucleoside-diphosphate sugar epimerase
2294	 45.26	-1	2462331..2463395	+	354	83645207	rfbB	HCH_02406	-	dTDP-glucose 4,6-dehydratase
2295	 46.85	-1	2463479..2464351	+	290	83645208	rfbA	HCH_02408	-	glucose-1-phosphate thymidylyltransferase
2296	 45.74	-1	2464363..2464902	+	179	83645209	rfbC	HCH_02409	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2297	 46.38	-1	2464902..2465813	+	303	83645210	rfbD	HCH_02410	-	dTDP-4-dehydrorhamnose reductase
2298	 43.49	-1	2465945..2466781	+	278	83645211	-	HCH_02411	-	glycosyltransferase
2299	 51.21	0	2466806..2468215	+	469	83645212	-	HCH_02412	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
2300	 51.85	0	2468276..2469193	-	305	83645213	-	HCH_02413	-	ABC-type Zn2+ transport system, periplasmic component/surface adhesin
2301	 51.00	0	2469363..2469713	+	116	83645214	pilZ	HCH_02415	-	Tfp pilus assembly protein PilZ
2302	 52.51	0	2469801..2470598	+	265	83645215	tatD	HCH_02416	-	Mg-dependent DNase
2303	 54.61	0	2470607..2471452	+	281	83645216	-	HCH_02417	-	alpha/beta superfamily hydrolase/acyltransferase
2304	 53.47	0	2471481..2472374	+	297	83645217	-	HCH_02418	-	hypothetical protein
2305	 54.15	0	2472409..2473455	+	348	83645218	-	HCH_02419	-	alpha-beta hydrolase family esterase
2306	 54.86	0	2473509..2474414	+	301	83645219	-	HCH_02420	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2307	 57.26	0	2474463..2475578	+	371	83645220	aroC	HCH_02421	-	chorismate synthase
2308	 55.76	0	2475815..2476969	+	384	83645221	-	HCH_02422	-	major facilitator superfamily permease
2309	 50.14	0	2477353..2477715	+	120	83645222	-	HCH_02424	-	ATP-dependent protease HslVU (ClpYQ), ATPase subunit
2310	 54.14	0	2477850..2479661	+	603	83645223	-	HCH_02425	-	Poly(3-hydroxyalkanoate) synthetase
2311	 57.03	0	2479658..2480539	-	293	83645224	-	HCH_02426	-	transcriptional regulator
2312	 50.88	0	2480608..2480721	+	37	83645225	-	HCH_02427	-	hypothetical protein
2313	 58.26	0	2480741..2482156	+	471	83645226	leuC	HCH_02428	-	isopropylmalate isomerase large subunit
2314	 52.01	0	2482168..2482815	+	215	83645227	leuD	HCH_02429	-	isopropylmalate isomerase small subunit
2315	 59.83	+1	2482874..2483956	+	360	83645228	leuB	HCH_02430	-	3-isopropylmalate dehydrogenase
2316	 57.26	0	2484062..2485177	+	371	83645229	asd	HCH_02431	-	aspartate-semialdehyde dehydrogenase
2317	 55.87	0	2485721..2488759	+	1012	83645230	-	HCH_02433	-	TPR repeat-containing protein
2318	 57.28	0	2488807..2489658	+	283	83645231	truA	HCH_02434	-	tRNA pseudouridine synthase A
2319	 56.07	0	2489786..2490427	+	213	83645232	trpF	HCH_02435	-	phosphoribosylanthranilate isomerase
2320	 56.37	0	2490399..2491631	+	410	83645233	trpB1	HCH_02436	-	tryptophan synthase subunit beta
2321	 56.34	0	2491644..2492447	+	267	83645234	trpA1	HCH_02437	-	tryptophan synthase subunit alpha
2322	 55.52	0	2492468..2493400	+	310	83645235	accD	HCH_02438	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
2323	 57.08	0	2493446..2494738	+	430	83645236	folC	HCH_02439	-	folylpolyglutamate synthase
2324	 53.28	0	2494816..2495592	+	258	83645237	dedD	HCH_02440	-	DedD protein
2325	 51.94	0	2495691..2496179	+	162	83645238	-	HCH_02441	-	uncharacterized membrane protein, required for colicin V production
2326	 56.02	0	2496224..2497744	+	506	83645239	purF	HCH_02442	-	amidophosphoribosyltransferase
2327	 58.01	0	2497946..2499169	+	407	83645240	metZ	HCH_02443	-	O-succinylhomoserine sulfhydrylase
2328	 58.33	0	2499166..2499273	+	35	83645241	-	HCH_02444	-	hypothetical protein
2329	 56.24	0	2499412..2501904	+	830	83645242	ftsK	HCH_02445	-	cell division protein FtsK
2330	 52.22	0	2501910..2502539	+	209	83645243	lolA	HCH_02446	-	outer-membrane lipoprotein carrier protein
2331	 57.68	0	2502536..2503882	+	448	83645244	-	HCH_02447	-	recombination factor protein RarA
2332	 53.39	0	2503910..2504293	+	127	83645245	crcB	HCH_02448	-	hypothetical protein
2333	 56.23	0	2504317..2505600	+	427	83645246	serS	HCH_02449	-	seryl-tRNA synthetase
2334	 56.74	0	2505609..2507018	+	469	83645247	cysG	HCH_02450	-	uroporphyrinogen-III methylase
2335	 54.59	0	2507075..2507281	-	68	83645248	-	HCH_02451	-	hypothetical protein
2336	 59.61	+1	2507396..2508472	-	358	83645249	modC	HCH_02452	-	molybdate ABC transporter, ATP-binding protein
2337	 59.02	0	2508469..2509161	-	230	83645250	modB	HCH_02453	-	molybdate ABC transporter, permease protein
2338	 57.29	0	2509224..2509991	-	255	83645251	modA	HCH_02454	-	molybdate ABC transporter, periplasmic molybdate-binding protein
2339	 59.83	+1	2509990..2510106	+	38	83645252	-	HCH_02456	-	hypothetical protein
2340	 59.22	+1	2510100..2510918	-	272	83645253	modE	HCH_02455	-	molybdenum-binding protein
2341	 55.58	0	2511170..2512513	+	447	83645254	-	HCH_02457	-	FHA domain-containing protein
2342	 54.42	0	2512752..2514449	+	565	83645255	-	HCH_02458	-	methyl-accepting chemotaxis protein
2343	 53.94	0	2514728..2515984	+	418	83645256	-	HCH_02459	-	HD-GYP domain-containing protein
2344	 56.97	0	2515997..2516398	-	133	83645257	-	HCH_02460	-	hypothetical protein
2345	 57.14	0	2516916..2517104	-	62	83645258	-	HCH_02461	-	hypothetical protein
2346	 59.46	+1	2517124..2517831	-	235	83645259	-	HCH_02462	-	response regulator
2347	 47.75	0	2518392..2518502	+	36	83645260	-	HCH_02463	-	hypothetical protein
2348	 57.68	0	2518537..2521350	+	937	83645261	-	HCH_02464	-	cellulase
2349	 57.89	0	2521463..2524321	+	952	83645262	-	HCH_02465	-	RTX toxins and related Ca2+-binding protein
2350	 53.57	0	2524462..2525469	-	335	83645263	-	HCH_02466	-	transcriptional regulator
2351	 57.65	0	2525768..2526688	+	306	83645264	-	HCH_02467	-	ABC-type sugar transport system, periplasmic component
2352	 56.71	0	2526952..2528457	+	501	83645265	-	HCH_02469	-	ABC-type sugar transport system, ATPase component
2353	 59.27	+1	2528450..2529436	+	328	83645266	-	HCH_02470	-	ribose/xylose/arabinose/galactoside ABC-type transporter permease
2354	 58.68	0	2529505..2530581	+	358	83645267	-	HCH_02471	-	threonine dehydrogenase and related Zn-dependent dehydrogenase
2355	 61.51	+1	2530593..2532143	+	516	83645268	-	HCH_02472	-	sugar (pentulose and hexulose) kinase
2356	 59.24	+1	2532148..2533116	+	322	83645269	tal2	HCH_02473	-	transaldolase B
2357	 55.26	0	2533134..2533247	+	37	83645270	-	HCH_02474	-	hypothetical protein
2358	 58.03	0	2533274..2534605	-	443	83645271	-	HCH_02475	-	cytochrome c peroxidase
2359	 56.30	0	2534614..2535636	-	340	83645272	-	HCH_02476	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.