IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2162	 47.90	0	2328650..2329006	-	118	83645075	-	HCH_02259	-	hypothetical protein
2163	 48.10	0	2329672..2330091	+	139	83645076	-	HCH_02260	-	mannose-6-phosphate isomerase
2164	 42.33	-1	2330088..2330576	+	162	83645077	-	HCH_02261	-	hypothetical protein
2165	 38.64	-2	2330686..2331024	+	112	83645078	-	HCH_02262	-	hypothetical protein
2166	 43.67	-1	2331485..2331784	+	99	83645079	-	HCH_02263	-	hypothetical protein
2167	 52.87	0	2331859..2332554	-	231	83645080	-	HCH_02264	-	SAM-dependent methyltransferase
2168	 53.68	0	2332695..2333102	+	135	83645081	-	HCH_02265	-	transcriptional regulator
2169	 54.47	0	2333290..2334666	-	458	83645082	hemN2	HCH_02266	-	coproporphyrinogen III oxidase
2170	 60.38	+1	2334743..2335474	-	243	83645083	-	HCH_02267	-	hypothetical protein
2171	 56.41	0	2335467..2335700	-	77	83645084	ccoS	HCH_02268	-	cytochrome oxidase maturation protein, cbb3-type
2172	 58.68	0	2335710..2338151	-	813	83645085	-	HCH_02269	-	copper-translocating P-type ATPase
2173	 51.41	0	2338144..2338674	-	176	83645086	-	HCH_02271	-	hypothetical protein
2174	 53.84	0	2338674..2340107	-	477	83645087	-	HCH_02272	-	polyferredoxin
2175	 54.14	0	2340218..2341111	-	297	83645088	ccoP	HCH_02273	-	cytochrome c oxidase, cbb3-type, subunit III
2176	 50.54	0	2341104..2341289	-	61	83645089	ccoQ	HCH_02274	-	cytochrome c oxidase, cbb3-type, subunit CcoQ
2177	 53.57	0	2341295..2341897	-	200	83645090	ccoO	HCH_02275	-	cytochrome c oxidase, cbb3-type, subunit II
2178	 54.22	0	2341917..2343362	-	481	83645091	ccoN	HCH_02276	-	cytochrome c oxidase, cbb3-type, subunit I
2179	 58.69	0	2343940..2344566	+	208	83645092	-	HCH_02277	-	hydrolase of the alpha/beta-hydrolase fold
2180	 55.56	0	2344639..2345808	+	389	83645093	-	HCH_02278	-	putative RNA 2'-O-ribose methyltransferase
2181	 53.68	0	2345891..2346175	-	94	83645094	-	HCH_02279	-	hypothetical protein
2182	 49.24	0	2346295..2346558	+	87	83645095	-	HCH_02280	-	redox protein, regulator of disulfide bond formation
2183	 56.98	0	2346563..2347450	-	295	83645096	-	HCH_02281	-	DMT family permease
2184	 57.63	0	2347495..2349408	-	637	83645097	dsbD	HCH_02282	-	Thiol:disulfide interchange protein
2185	 46.24	-1	2349846..2350403	+	185	83645098	-	HCH_02284	-	hypothetical protein
2186	 52.28	0	2350367..2351680	-	437	83645099	mcrC	HCH_02283	-	McrBC 5-methylcytosine restriction system component
2187	 50.90	0	2351680..2354013	-	777	83645100	mcrB	HCH_02286	-	GTPase subunit of restriction endonuclease
2188	 39.84	-2	2354038..2354160	-	40	83645101	-	HCH_02288	-	hypothetical protein
2189	 56.16	0	2354343..2354618	+	91	83645102	-	HCH_02289	-	hypothetical protein
2190	 57.14	0	2354655..2354759	+	34	83645103	-	HCH_02290	-	hypothetical protein
2191	 56.35	0	2354853..2356034	+	393	83645104	rhlB	HCH_02291	-	ATP-dependent RNA helicase
2192	 55.93	0	2356065..2357210	+	381	83645105	-	HCH_02292	-	phosphoglycerate dehydrogenase and related dehydrogenase
2193	 55.22	0	2357212..2357412	-	66	83645106	-	HCH_02293	-	hypothetical protein
2194	 43.54	-1	2357655..2357801	+	48	83645107	-	HCH_02294	-	hypothetical protein
2195	 52.44	0	2357837..2358532	+	231	83645108	-	HCH_02295	-	hypothetical protein
2196	 55.67	0	2358625..2359506	-	293	83645109	-	HCH_02296	-	heat shock protein HtpX
2197	 46.90	-1	2359755..2360093	-	112	83645110	-	HCH_02297	-	hypothetical protein
2198	 59.53	+1	2360261..2361157	-	298	83645111	-	HCH_02298	-	transcriptional regulator
2199	 59.33	+1	2361370..2362269	+	299	83645112	penP	HCH_02299	-	Beta-lactamase class A
2200	 53.85	0	2362366..2362833	-	155	83645113	-	HCH_02300	-	hypothetical protein
2201	 56.79	0	2362906..2364120	-	404	83645114	-	HCH_02301	-	aminotransferase AlaT
2202	 54.52	0	2364344..2364763	+	139	83645115	-	HCH_02302	-	peptide methionine sulfoxide reductase domain-containing protein
2203	 57.21	0	2364793..2365458	+	221	83645116	-	HCH_02303	-	3-methyladenine DNA glycosylase
2204	 52.08	0	2365615..2366094	+	159	83645117	-	HCH_02304	-	glutathione peroxidase
2205	 57.02	0	2366091..2366567	+	158	83645118	-	HCH_02305	-	transcriptional regulator
2206	 55.22	0	2366575..2368968	-	797	83645119	-	HCH_02306	-	Signal transduction histidine kinase
2207	 51.54	0	2369068..2369847	-	259	83645120	-	HCH_02307	-	hypothetical protein
2208	 51.02	0	2369970..2370461	-	163	83645121	sixA1	HCH_02308	-	phosphohistidine phosphatase SixA
2209	 53.27	0	2370630..2371622	+	330	83645122	-	HCH_02309	-	uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
2210	 56.12	0	2371863..2373407	+	514	83645123	-	HCH_02310	-	ABC-type uncharacterized transport system, ATPase components
2211	 55.04	0	2373407..2374507	+	366	83645124	-	HCH_02311	-	ABC-type uncharacterized transport system, permease component
2212	 58.59	0	2374504..2375469	+	321	83645125	-	HCH_02312	-	uncharacterized ABC-type transport system, permease component
2213	 57.96	0	2375550..2376422	+	290	83645126	-	HCH_02313	-	ribokinase family sugar kinase
2214	 58.85	0	2376426..2377397	+	323	83645127	-	HCH_02314	-	inosine-uridine nucleoside N-ribohydrolase
2215	 54.71	0	2377713..2379359	+	548	83645128	ushA	HCH_02315	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
2216	 48.03	0	2379476..2380033	-	185	83645129	-	HCH_02316	-	hypothetical protein
2217	 40.95	-2	2380009..2380113	+	34	83645130	-	HCH_02317	-	hypothetical protein
2218	 52.99	0	2380265..2380381	-	38	83645131	-	HCH_02318	-	hypothetical protein
2219	 53.99	0	2380342..2382306	-	654	83645132	-	HCH_02319	-	hypothetical protein
2220	 45.39	-1	2382283..2382423	+	46	83645133	-	HCH_02320	-	hypothetical protein
2221	 50.00	0	2382442..2382591	+	49	83645134	-	HCH_02321	-	hypothetical protein
2222	 45.63	-1	2382671..2383036	+	121	83645135	-	HCH_02322	-	hypothetical protein
2223	 55.73	0	2383156..2384490	-	444	83645136	aceA	HCH_02323	-	isocitrate lyase
2224	 54.52	0	2384598..2385560	+	320	83645137	-	HCH_02324	-	transcriptional regulator
2225	 54.23	0	2385596..2386375	-	259	83645138	-	HCH_02325	-	cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
2226	 59.60	+1	2386402..2388567	-	721	83645139	-	HCH_02326	-	hypothetical protein
2227	 56.24	0	2388580..2389845	-	421	83645140	-	HCH_02327	-	TPR repeat-containing protein
2228	 57.08	0	2390021..2392222	+	733	83645141	-	HCH_02328	-	adenylate cyclase
2229	 56.64	0	2392264..2393220	-	318	83645142	-	HCH_02329	-	histone acetyltransferase HPA2-like acetyltransferase
2230	 59.11	+1	2393207..2394424	-	405	83645143	-	HCH_02330	-	hypothetical protein
2231	 54.17	0	2394432..2395871	-	479	83645144	purB	HCH_02331	-	adenylosuccinate lyase
2232	 52.59	0	2395887..2396504	-	205	83645145	-	HCH_02332	-	hypothetical protein
2233	 55.25	0	2396518..2397612	-	364	83645146	trmU	HCH_02333	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2234	 54.14	0	2397745..2398191	-	148	83645147	mutT	HCH_02334	-	NTP pyrophosphohydrolase including oxidative damage repair enzyme
2235	 54.68	0	2398214..2398822	-	202	83645148	rsuA	HCH_02335	-	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
2236	 53.73	0	2398988..2400247	+	419	83645149	icd	HCH_02336	-	isocitrate dehydrogenase, NADP-dependent
2237	 47.01	-1	2400456..2400806	-	116	83645150	-	HCH_02337	-	cold shock protein
2238	 49.61	0	2401168..2401548	+	126	161897896	clpS	HCH_02338	-	ATP-dependent Clp protease adaptor protein ClpS
2239	 50.66	0	2401567..2403846	+	759	83645152	-	HCH_02339	-	ATPase with chaperone activity, ATP-binding subunit
2240	 46.12	-1	2404005..2404223	-	72	83645153	infA	HCH_02340	-	translation initiation factor IF-1
2241	 35.24	-2	2404186..2404395	+	69	83645154	-	HCH_02341	-	hypothetical protein
2242	 52.48	0	2404434..2405138	-	234	83645155	-	HCH_02342	-	arginyl-tRNA-protein transferase
2243	 53.19	0	2405141..2405845	-	234	83645156	aat	HCH_02343	-	leucyl/phenylalanyl-tRNA--protein transferase
2244	 55.94	0	2405950..2406900	-	316	83645157	trxB1	HCH_02344	-	thioredoxin-disulfide reductase
2245	 56.00	0	2407084..2407992	-	302	83645158	moxR	HCH_02345	-	MoxR-like ATPase
2246	 57.03	0	2408125..2409027	-	300	83645159	-	HCH_02346	-	amidohydrolase
2247	 54.88	0	2409027..2410061	-	344	83645160	-	HCH_02347	-	peptidylarginine deiminase-like protein
2248	 51.36	0	2410100..2410393	-	97	83645161	-	HCH_02348	-	hypothetical protein
2249	 52.29	0	2410526..2411137	-	203	83645162	-	HCH_02349	-	hypothetical protein
2250	 50.32	0	2411314..2412555	+	413	83645163	-	HCH_02350	-	ABC-type transport system, involved in lipoprotein release, permease component
2251	 51.58	0	2412548..2413243	+	231	83645164	-	HCH_02351	-	peptide ABC transporter ATPase
2252	 51.56	0	2413343..2414302	-	319	83645165	tal1	HCH_02352	-	transaldolase B
2253	 52.00	0	2414330..2415379	-	349	83645166	-	HCH_02353	-	tRNA-dihydrouridine synthase A
2254	 59.76	+1	2415668..2415913	-	81	83645167	-	HCH_02354	-	transposase
2255	 58.12	0	2416000..2416233	-	77	83645168	-	HCH_02355	-	transposase
2256	 48.55	0	2416329..2416466	+	45	83645169	-	HCH_02357	-	hypothetical protein
2257	 36.48	-2	2416869..2418077	+	402	83645170	-	HCH_02358	-	hypothetical protein
2258	 37.97	-2	2418140..2418916	+	258	83645171	-	HCH_02360	-	hypothetical protein
2259	 33.63	-2	2418925..2419266	+	113	83645172	-	HCH_02361	-	hypothetical protein
2260	 37.58	-2	2419317..2420681	-	454	83645173	-	HCH_02362	-	hypothetical protein
2261	 47.09	-1	2422856..2423713	-	285	83645174	-	HCH_02365	-	amino acid ABC transporter periplasmic protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.