IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2033	 49.42	0	2179883..2180224	-	113	83644946	-	HCH_02127	-	hypothetical protein
2034	 48.03	0	2180559..2181218	-	219	83644947	-	HCH_02128	-	SH3 domain-containing protein
2035	 55.33	0	2181392..2181691	-	99	83644948	-	HCH_02129	-	hypothetical protein
2036	 48.21	0	2181739..2182323	-	194	83644949	ispZ	HCH_02130	-	intracellular septation protein A
2037	 54.24	0	2182492..2183352	+	286	83644950	-	HCH_02131	-	metal-dependent phosphoesterase
2038	 51.45	0	2183363..2184532	+	389	83644951	-	HCH_02132	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
2039	 47.31	-1	2184574..2185131	-	185	83644952	-	HCH_02133	-	metal-binding protein containing
2040	 46.26	-1	2185159..2185305	-	48	83644953	-	HCH_02134	-	hypothetical protein
2041	 55.25	0	2185357..2188527	-	1056	83644954	rne	HCH_02135	-	ribonucleases G and E
2042	 50.74	0	2189078..2190025	+	315	83644955	rluC	HCH_02136	-	pseudouridylate synthases, 23S RNA-specific
2043	 51.40	0	2190038..2190679	+	213	83644956	-	HCH_02137	-	phosphatase
2044	 49.29	0	2190740..2191729	+	329	83644957	-	HCH_02138	-	periplasmic serine protease (ClpP class)
2045	 48.50	0	2191780..2192379	-	199	83644958	maf1	HCH_02139	-	maf protein
2046	 39.78	-2	2192361..2192453	+	30	83644959	-	HCH_02140	-	hypothetical protein
2047	 48.66	0	2192508..2193029	+	173	83644960	-	HCH_02141	-	metal-binding protein
2048	 51.67	0	2193078..2193257	+	59	83644961	rpmF	HCH_10002	-	50S ribosomal protein L32
2049	 50.00	0	2193599..2194276	+	225	83644962	plsX	HCH_02142	-	Fatty acid/phospholipid biosynthesis enzyme
2050	 52.18	0	2194349..2195266	+	305	83644963	fabD	HCH_02143	-	malonyl CoA-acyl carrier protein transacylase
2051	 51.02	0	2195277..2196011	+	244	83644964	fabG	HCH_02144	-	3-oxoacyl-(acyl-carrier-protein) reductase
2052	 44.87	-1	2196125..2196358	+	77	83644965	acpP	HCH_02145	-	acyl carrier protein
2053	 48.48	0	2196457..2197281	+	274	83644966	pabC	HCH_02146	-	4-amino-4-deoxychorismate lyase
2054	 50.92	0	2197283..2198311	+	342	83644967	-	HCH_02147	-	periplasmic solute-binding protein
2055	 51.52	0	2198375..2199001	+	208	83644968	tmk	HCH_02148	-	thymidylate kinase
2056	 55.49	0	2199066..2201714	-	882	83644969	acnB	HCH_02149	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
2057	 49.10	0	2201978..2202586	+	202	83644970	miaE	HCH_02150	-	hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA
2058	 52.52	0	2202612..2203346	-	244	83644971	lpxH	HCH_02151	-	UDP-2,3-diacylglucosamine hydrolase
2059	 51.31	0	2203350..2203844	-	164	83644972	ppiB	HCH_02152	-	peptidyl-prolyl cis-trans isomerase
2060	 49.97	0	2204066..2205754	+	562	83644973	glnS	HCH_02153	-	glutaminyl-tRNA synthetase
2061	 51.28	0	2205808..2207211	+	467	83644974	cysS	HCH_02154	-	cysteinyl-tRNA synthetase
2062	 55.82	0	2207310..2208194	-	294	83644975	folD	HCH_02155	-	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
2063	 48.48	0	2208296..2208394	+	32	83644976	-	HCH_02156	-	hypothetical protein
2064	 48.77	0	2209109..2210449	+	446	83644977	tig	HCH_02157	-	trigger factor
2065	 49.38	0	2210558..2211199	+	213	83644978	clpP1	HCH_02158	-	ATP-dependent Clp protease, proteolytic subunit ClpP
2066	 48.99	0	2211277..2212560	+	427	83644979	clpX	HCH_02160	-	ATP-dependent protease ATP-binding subunit
2067	 34.19	-2	2212597..2212713	+	38	83644980	-	HCH_02161	-	hypothetical protein
2068	 48.87	0	2212772..2215204	+	810	83644981	lon2	HCH_02162	-	ATP-dependent protease La
2069	 48.35	0	2215403..2215675	+	90	83644982	-	HCH_02163	-	nucleoid DNA-binding protein
2070	 49.55	0	2215875..2217761	+	628	83644983	-	HCH_02164	-	parvulin-like peptidyl-prolyl isomerase
2071	 49.38	0	2218082..2218891	+	269	83644984	-	HCH_02165	-	double-glycine peptidase
2072	 49.26	0	2218955..2219971	+	338	83644985	-	HCH_02166	-	hypothetical protein
2073	 54.16	0	2220002..2221624	+	540	83644986	-	HCH_02167	-	long-chain fatty acid ABC transporter
2074	 54.02	0	2221627..2222757	+	376	83644987	-	HCH_02168	-	hypothetical protein
2075	 56.08	0	2222773..2223849	-	358	83644988	-	HCH_02169	-	xylanase/chitin deacetylase
2076	 52.83	0	2223846..2224481	-	211	83644989	-	HCH_02170	-	DnaJ-class molecular chaperone
2077	 52.28	0	2224513..2225325	+	270	83644990	-	HCH_02172	-	hypothetical protein
2078	 41.81	-2	2225326..2225856	-	176	83644991	-	HCH_02173	-	hypothetical protein
2079	 50.93	0	2226098..2226955	+	285	83644992	-	HCH_02174	-	ATPase
2080	 51.55	0	2227003..2227293	+	96	83644993	-	HCH_02175	-	hypothetical protein
2081	 49.07	0	2227403..2227510	+	35	83644994	-	HCH_02176	-	hypothetical protein
2082	 57.04	0	2227741..2229174	+	477	83644995	-	HCH_02177	-	NAD-dependent aldehyde dehydrogenase
2083	 54.68	0	2229250..2230917	+	555	83644996	-	HCH_02178	-	acetolactate synthase
2084	 54.01	0	2231059..2233776	+	905	83644997	-	HCH_02179	-	Signal transduction histidine kinase
2085	 51.30	0	2233955..2235334	+	459	83644998	-	HCH_02180	-	hypothetical protein
2086	 38.60	-2	2235710..2235823	+	37	83644999	-	HCH_02181	-	hypothetical protein
2087	 46.21	-1	2235987..2237966	+	659	83645000	-	HCH_02182	-	hypothetical protein
2088	 48.03	0	2238069..2238803	-	244	83645001	-	HCH_02183	-	hypothetical protein
2089	 52.00	0	2238976..2241150	-	724	83645002	prc	HCH_02184	-	periplasmic protease
2090	 54.18	0	2241587..2243740	-	717	83645003	fadB	HCH_02185	-	3-hydroxyacyl-CoA dehydrogenase
2091	 56.16	0	2243787..2244995	-	402	83645004	-	HCH_02186	-	acetyl-CoA acetyltransferase
2092	 49.06	0	2245248..2245514	+	88	83645005	-	HCH_02187	-	hypothetical protein
2093	 53.91	0	2245604..2248456	-	950	83645006	-	HCH_02188	-	hypothetical protein
2094	 52.08	0	2248689..2249168	+	159	83645007	-	HCH_02189	-	hypothetical protein
2095	 55.36	0	2249189..2250718	-	509	83645008	-	HCH_02190	-	soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
2096	 54.48	0	2250957..2254853	+	1298	83645009	purL	HCH_02192	-	phosphoribosylformylglycinamidine synthase
2097	 39.25	-2	2255011..2255196	-	61	83645010	-	HCH_02193	-	hypothetical protein
2098	 51.60	0	2255447..2255758	+	103	83645011	-	HCH_02194	-	hypothetical protein
2099	 49.84	0	2255797..2256432	-	211	83645012	-	HCH_02195	-	ADP-ribose pyrophosphatase
2100	 48.45	0	2256501..2257082	+	193	83645013	-	HCH_02196	-	NTP pyrophosphohydrolase including oxidative damage repair enzyme
2101	 51.53	0	2257089..2257610	+	173	83645014	-	HCH_02197	-	carbonic anhydrase
2102	 45.24	-1	2257617..2257826	+	69	83645015	-	HCH_02198	-	Fe-S protein
2103	 51.87	0	2257858..2259060	+	400	83645016	purT	HCH_02199	-	phosphoribosylglycinamide formyltransferase 2
2104	 55.28	0	2264017..2264385	-	122	83645017	-	HCH_10038	-	hypothetical protein
2105	 47.69	-1	2264875..2267973	-	1032	83645018	dnaE2	HCH_02200	-	DNA polymerase III, alpha subunit
2106	 49.88	0	2267989..2269287	-	432	83645019	-	HCH_02201	-	nucleotidyltransferase/DNA polymerase involved in DNA repair
2107	 50.95	0	2269418..2270098	-	226	83645020	-	HCH_02202	-	hypothetical protein
2108	 49.08	0	2270285..2270773	+	162	83645021	-	HCH_02203	-	histone acetyltransferase HPA2-like acetyltransferase
2109	 44.87	-1	2270825..2273719	-	964	83645022	-	HCH_02204	-	M16 family peptidase (insulinase) protein
2110	 53.07	0	2273995..2274840	+	281	83645023	-	HCH_02205	-	acetyltransferase (GNAT) family protein
2111	 52.29	0	2274867..2275916	-	349	83645024	potD	HCH_02206	-	spermidine/putrescine-binding periplasmic protein
2112	 49.61	0	2275913..2276686	-	257	83645025	potC	HCH_02207	-	spermidine/putrescine ABC transporter membrane protein
2113	 56.63	0	2276670..2277536	-	288	83645026	potB	HCH_02208	-	spermidine/putrescine ABC transporter membrane protein
2114	 54.74	0	2277538..2278635	-	365	83645027	potA	HCH_02209	-	putrescine/spermidine ABC transporter ATPase protein
2115	 51.88	0	2278839..2279582	+	247	83645028	-	HCH_02210	-	amino acid ABC transporter periplasmic protein
2116	 57.32	0	2279608..2280516	-	302	83645029	-	HCH_02211	-	collagenase-like protease
2117	 59.26	+1	2280577..2281575	-	332	83645030	-	HCH_02212	-	collagenase-like protease
2118	 55.99	0	2281615..2282298	+	227	83645031	-	HCH_02213	-	putative lipid carrier protein
2119	 58.65	0	2282320..2282943	-	207	83645032	-	HCH_02214	-	putative threonine efflux protein
2120	 56.86	0	2282970..2283122	-	50	83645033	-	HCH_02215	-	hypothetical protein
2121	 58.26	0	2283094..2286162	-	1022	83645034	-	HCH_02216	-	cation/multidrug efflux pump
2122	 56.48	0	2286190..2287308	-	372	83645035	-	HCH_02217	-	membrane-fusion protein
2123	 53.80	0	2287678..2289441	+	587	83645036	-	HCH_02219	-	Outer membrane protein
2124	 57.64	0	2289441..2293283	+	1280	83645037	-	HCH_02220	-	hypothetical protein
2125	 45.50	-1	2293310..2293498	-	62	83645038	-	HCH_02221	-	hypothetical protein
2126	 56.63	0	2293566..2294183	-	205	83645039	-	HCH_02222	-	hypothetical protein
2127	 57.24	0	2294553..2295167	+	204	83645040	-	HCH_02223	-	hypothetical protein
2128	 58.60	0	2295164..2296192	+	342	83645041	rsmC	HCH_02224	-	16S RNA G1207 methylase RsmC
2129	 60.85	+1	2296179..2297072	+	297	83645042	rluA2	HCH_02226	-	pseudouridylate synthases, 23S RNA-specific
2130	 55.98	0	2297029..2297421	-	130	83645043	-	HCH_02225	-	hypothetical protein
2131	 57.79	0	2297521..2298432	+	303	83645044	miaA	HCH_02227	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2132	 59.33	+1	2298435..2298884	-	149	83645045	-	HCH_02228	-	integral membrane protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.