IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1963	 53.76	0	2096725..2097282	-	185	83644876	-	HCH_02055	-	nicotinamidase-like amidase
1964	 36.26	-2	2097657..2097998	-	113	83644877	-	HCH_02056	-	hypothetical protein
1965	 54.81	0	2098522..2099811	+	429	83644878	-	HCH_02057	-	major facilitator superfamily permease
1966	 58.43	0	2099825..2100601	-	258	83644879	-	HCH_02058	-	Short-chain dehydrogenase of various substrate specificities
1967	 55.13	0	2100899..2102857	+	652	83644880	-	HCH_02059	-	protein kinase
1968	 51.82	0	2103280..2103663	+	127	83644881	-	HCH_02060	-	hypothetical protein
1969	 55.17	0	2103827..2104522	+	231	83644882	rluA1	HCH_02061	-	pseudouridylate synthases, 23S RNA-specific
1970	 47.31	-1	2104535..2104720	-	61	83644883	-	HCH_02062	-	hypothetical protein
1971	 52.80	0	2104891..2106816	+	641	83644884	htpG2	HCH_02063	-	heat shock protein 90
1972	 54.93	0	2106933..2108312	-	459	83644885	-	HCH_02064	-	hypothetical protein
1973	 35.61	-2	2108597..2108728	+	43	83644886	-	HCH_02065	-	hypothetical protein
1974	 48.58	0	2108697..2109155	+	152	83644887	-	HCH_02066	-	hypothetical protein
1975	 49.19	0	2109314..2109559	+	81	83644888	-	HCH_02067	-	hypothetical protein
1976	 52.74	0	2109608..2110210	-	200	83644889	lexA	HCH_02068	-	LexA repressor
1977	 53.26	0	2110463..2111044	+	193	83644890	-	HCH_02069	-	putative NADPH-quinone reductase (modulator of drug activity B)
1978	 51.39	0	2111234..2111377	-	47	83644891	-	HCH_02070	-	hypothetical protein
1979	 50.90	0	2111520..2111798	+	92	83644892	-	HCH_02071	-	hypothetical protein
1980	 53.33	0	2111850..2112089	-	79	83644893	-	HCH_02072	-	hypothetical protein
1981	 54.04	0	2112622..2124552	+	3976	83644894	-	HCH_02073	-	Rhs family protein
1982	 38.81	-2	2124568..2124987	+	139	83644895	-	HCH_02074	-	hypothetical protein
1983	 50.70	0	2125309..2126811	+	500	83644896	-	HCH_02075	-	Rhs family protein
1984	 37.96	-2	2126837..2127355	+	172	83644897	-	HCH_02076	-	hypothetical protein
1985	 37.50	-2	2127563..2128378	+	271	83644898	-	HCH_02077	-	hypothetical protein
1986	 40.15	-2	2128399..2128530	-	43	83644899	-	HCH_02078	-	hypothetical protein
1987	 50.00	0	2128633..2128872	-	79	83644900	-	HCH_02079	-	hypothetical protein
1988	 51.73	0	2128905..2130698	+	597	83644901	-	HCH_02080	-	Rhs family protein
1989	 32.54	-2	2131018..2131143	+	41	83644902	-	HCH_02081	-	hypothetical protein
1990	 56.41	0	2131241..2131357	-	38	83644903	-	HCH_02082	-	hypothetical protein
1991	 50.48	0	2131310..2132755	+	481	83644904	-	HCH_02083	-	Rhs family protein
1992	 37.83	-2	2132821..2133309	+	162	83644905	-	HCH_02084	-	hypothetical protein
1993	 52.22	0	2133647..2135473	+	608	83644906	-	HCH_02086	-	Rhs family protein
1994	 37.44	-2	2135473..2135910	+	145	83644907	-	HCH_02087	-	hypothetical protein
1995	 51.81	0	2135942..2137543	+	533	83644908	-	HCH_02088	-	Rhs family protein
1996	 45.57	-1	2138155..2138538	-	127	83644909	-	HCH_02089	-	hypothetical protein
1997	 57.17	0	2139316..2139789	+	157	83644910	-	HCH_02090	-	Rhs family protein
1998	 43.06	-1	2139963..2140538	+	191	83644911	-	HCH_02091	-	hypothetical protein
1999	 50.41	0	2141882..2142127	-	81	83644912	-	HCH_02092	-	hypothetical protein
2000	 50.14	0	2142160..2143968	+	602	83644913	-	HCH_02093	-	Rhs family protein
2001	 52.03	0	2144574..2144819	-	81	83644914	-	HCH_02094	-	hypothetical protein
2002	 48.51	0	2144852..2145958	+	368	83644915	-	HCH_02095	-	Rhs family protein
2003	 32.88	-2	2146051..2146269	+	72	83644916	-	HCH_02096	-	hypothetical protein
2004	 57.05	0	2146688..2147332	+	214	83644917	-	HCH_02097	-	Rhs family protein
2005	 36.30	-2	2147537..2147974	+	145	83644918	-	HCH_02098	-	hypothetical protein
2006	 59.43	+1	2148276..2149394	+	372	83644919	-	HCH_02100	-	transposase DDE domain-containing protein
2007	 54.90	0	2149473..2149574	-	33	83644920	-	HCH_02101	-	hypothetical protein
2008	 54.07	0	2149837..2150328	-	163	83644921	-	HCH_02102	-	IS116/IS110/IS902 family transposase
2009	 50.42	0	2150398..2150871	-	157	83644922	-	HCH_02103	-	transposase
2010	 48.10	0	2151370..2151789	-	139	83644923	-	HCH_02104	-	hypothetical protein
2011	 53.42	0	2151942..2152598	-	218	83644924	-	HCH_02105	-	isoprenoid biosynthesis protein
2012	 51.80	0	2152791..2154377	+	528	83644925	-	HCH_02106	-	response regulator
2013	 48.87	0	2154349..2154702	+	117	83644926	-	HCH_02107	-	hypothetical protein
2014	 50.83	0	2154922..2155041	+	39	83644927	-	HCH_02108	-	hypothetical protein
2015	 51.19	0	2155216..2156268	+	350	83644928	-	HCH_02109	-	spermidine/putrescine-binding periplasmic protein
2016	 51.92	0	2156284..2158758	+	824	83644929	-	HCH_02110	-	signal transduction protein
2017	 51.33	0	2158887..2160392	+	501	83644930	gltX	HCH_02111	-	glutamyl-tRNA synthetase
2018	 47.29	-1	2160657..2160785	-	42	83644931	-	HCH_02112	-	hypothetical protein
2019	 52.40	0	2160735..2162024	+	429	83644932	-	HCH_02113	-	hypothetical protein
2020	 49.55	0	2163026..2164900	+	624	83644933	-	HCH_02114	-	major facilitator superfamily permease
2021	 51.11	0	2164929..2165693	-	254	83644934	-	HCH_02115	-	6-pyruvoyl-tetrahydropterin synthase
2022	 50.88	0	2165932..2167071	-	379	83644935	-	HCH_02116	-	FOG: CheY-like receiver
2023	 53.60	0	2167135..2168496	-	453	83644936	-	HCH_02117	-	hypothetical protein
2024	 46.30	-1	2168610..2168771	+	53	83644937	-	HCH_02119	-	hypothetical protein
2025	 51.24	0	2168649..2169173	-	174	83644938	-	HCH_02118	-	hypothetical protein
2026	 50.65	0	2169291..2169752	+	153	83644939	mgsA	HCH_02120	-	methylglyoxal synthase
2027	 52.83	0	2169955..2172888	+	977	83644940	-	HCH_02121	-	Zn-dependent peptidase
2028	 50.06	0	2172957..2173775	-	272	83644941	-	HCH_02122	-	hypothetical protein
2029	 53.36	0	2174167..2176533	+	788	83644942	ppsA	HCH_02123	-	phosphoenolpyruvate synthase
2030	 52.44	0	2176649..2177323	+	224	83644943	-	HCH_02124	-	nucleoside-diphosphate-sugar epimerase
2031	 49.29	0	2177415..2177909	+	164	83644944	menG	HCH_02125	-	ribonuclease activity regulator protein RraA
2032	 61.84	+1	2177993..2179381	-	462	83644945	-	HCH_02126	-	group II intron-encoding maturase
2033	 49.42	0	2179883..2180224	-	113	83644946	-	HCH_02127	-	hypothetical protein
2034	 48.03	0	2180559..2181218	-	219	83644947	-	HCH_02128	-	SH3 domain-containing protein
2035	 55.33	0	2181392..2181691	-	99	83644948	-	HCH_02129	-	hypothetical protein
2036	 48.21	0	2181739..2182323	-	194	83644949	ispZ	HCH_02130	-	intracellular septation protein A
2037	 54.24	0	2182492..2183352	+	286	83644950	-	HCH_02131	-	metal-dependent phosphoesterase
2038	 51.45	0	2183363..2184532	+	389	83644951	-	HCH_02132	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
2039	 47.31	-1	2184574..2185131	-	185	83644952	-	HCH_02133	-	metal-binding protein containing
2040	 46.26	-1	2185159..2185305	-	48	83644953	-	HCH_02134	-	hypothetical protein
2041	 55.25	0	2185357..2188527	-	1056	83644954	rne	HCH_02135	-	ribonucleases G and E
2042	 50.74	0	2189078..2190025	+	315	83644955	rluC	HCH_02136	-	pseudouridylate synthases, 23S RNA-specific
2043	 51.40	0	2190038..2190679	+	213	83644956	-	HCH_02137	-	phosphatase
2044	 49.29	0	2190740..2191729	+	329	83644957	-	HCH_02138	-	periplasmic serine protease (ClpP class)
2045	 48.50	0	2191780..2192379	-	199	83644958	maf1	HCH_02139	-	maf protein
2046	 39.78	-2	2192361..2192453	+	30	83644959	-	HCH_02140	-	hypothetical protein
2047	 48.66	0	2192508..2193029	+	173	83644960	-	HCH_02141	-	metal-binding protein
2048	 51.67	0	2193078..2193257	+	59	83644961	rpmF	HCH_10002	-	50S ribosomal protein L32
2049	 50.00	0	2193599..2194276	+	225	83644962	plsX	HCH_02142	-	Fatty acid/phospholipid biosynthesis enzyme
2050	 52.18	0	2194349..2195266	+	305	83644963	fabD	HCH_02143	-	malonyl CoA-acyl carrier protein transacylase
2051	 51.02	0	2195277..2196011	+	244	83644964	fabG	HCH_02144	-	3-oxoacyl-(acyl-carrier-protein) reductase
2052	 44.87	-1	2196125..2196358	+	77	83644965	acpP	HCH_02145	-	acyl carrier protein
2053	 48.48	0	2196457..2197281	+	274	83644966	pabC	HCH_02146	-	4-amino-4-deoxychorismate lyase
2054	 50.92	0	2197283..2198311	+	342	83644967	-	HCH_02147	-	periplasmic solute-binding protein
2055	 51.52	0	2198375..2199001	+	208	83644968	tmk	HCH_02148	-	thymidylate kinase
2056	 55.49	0	2199066..2201714	-	882	83644969	acnB	HCH_02149	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
2057	 49.10	0	2201978..2202586	+	202	83644970	miaE	HCH_02150	-	hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA
2058	 52.52	0	2202612..2203346	-	244	83644971	lpxH	HCH_02151	-	UDP-2,3-diacylglucosamine hydrolase
2059	 51.31	0	2203350..2203844	-	164	83644972	ppiB	HCH_02152	-	peptidyl-prolyl cis-trans isomerase
2060	 49.97	0	2204066..2205754	+	562	83644973	glnS	HCH_02153	-	glutaminyl-tRNA synthetase
2061	 51.28	0	2205808..2207211	+	467	83644974	cysS	HCH_02154	-	cysteinyl-tRNA synthetase
2062	 55.82	0	2207310..2208194	-	294	83644975	folD	HCH_02155	-	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.