IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1910	 50.00	0	2036647..2037306	+	219	83644823	-	HCH_01999	-	hypothetical protein
1911	 58.64	0	2037370..2038602	-	410	83644824	-	HCH_02000	-	poly(3-hydroxybutyrate) depolymerase precursor
1912	 55.62	0	2038982..2040031	+	349	83644825	-	HCH_02001	-	spermidine/putrescine-binding periplasmic protein
1913	 55.62	0	2040028..2042490	+	820	83644826	-	HCH_02002	-	signal transduction protein
1914	 56.27	0	2042655..2043212	+	185	83644827	-	HCH_02003	-	Rossmann fold nucleotide-binding protein
1915	 61.94	+1	2043238..2044125	-	295	83644828	-	HCH_02004	-	DMT family permease
1916	 60.38	+1	2044228..2044959	-	243	83644829	-	HCH_02005	-	AraC-type DNA-binding domain-containing protein
1917	 53.27	0	2045095..2046990	-	631	83644830	uvrD	HCH_02006	-	UvrD/REP helicase family protein
1918	 57.69	0	2047217..2048107	+	296	83644831	-	HCH_02007	-	transcriptional regulator
1919	 50.00	0	2048100..2048213	+	37	83644832	-	HCH_02008	-	hypothetical protein
1920	 58.46	0	2048222..2048623	+	133	83644833	-	HCH_02009	-	YjgF family translation initiation inhibitor
1921	 58.41	0	2048691..2049647	-	318	83644834	-	HCH_02010	-	hypothetical protein
1922	 54.70	0	2049988..2052987	+	999	83644835	-	HCH_02011	-	signal transduction protein
1923	 60.23	+1	2053015..2054304	-	429	83644836	-	HCH_02012	-	hypothetical protein
1924	 54.35	0	2054444..2055352	-	302	83644837	mutM2	HCH_02013	-	formamidopyrimidine-DNA glycosylase
1925	 40.44	-2	2056421..2057194	+	257	83644838	-	HCH_02014	-	amino acid ABC transporter periplasmic protein
1926	 40.71	-2	2057227..2057985	+	252	83644839	-	HCH_02015	-	amino acid ABC transporter periplasmic protein
1927	 50.00	0	2058252..2059421	+	389	83644840	-	HCH_02016	-	endoglucanase
1928	 42.05	-2	2059714..2060103	+	129	83644841	-	HCH_02017	-	hypothetical protein
1929	 40.68	-2	2060182..2060358	+	58	83644842	-	HCH_02018	-	hypothetical protein
1930	 39.25	-2	2060355..2060810	-	151	83644843	-	HCH_02019	-	hypothetical protein
1931	 55.47	0	2061786..2062526	+	246	83644844	-	HCH_02020	-	transcriptional regulator
1932	 52.65	0	2062656..2063033	+	125	83644845	-	HCH_02021	-	lactoylglutathione lyase
1933	 50.98	0	2063062..2063520	-	152	83644846	-	HCH_02022	-	hypothetical protein
1934	 48.19	0	2063456..2063953	+	165	83644847	-	HCH_02023	-	hypothetical protein
1935	 50.26	0	2063973..2064557	+	194	83644848	-	HCH_02024	-	hypothetical protein
1936	 53.89	0	2064661..2065419	-	252	83644849	-	HCH_02025	-	short-chain alcohol dehydrogenase-like protein
1937	 50.51	0	2065956..2066054	+	32	83644850	-	HCH_02026	-	hypothetical protein
1938	 55.32	0	2066348..2067052	+	234	83644851	-	HCH_02027	-	thioesterase involved in non-ribosomal peptide biosynthesis
1939	 59.27	+1	2067242..2068066	+	274	83644852	-	HCH_02028	-	short-chain alcohol dehydrogenase-like protein
1940	 58.90	0	2068130..2071129	+	999	83644853	-	HCH_02029	-	non-ribosomal peptide synthetase modules and related protein
1941	 59.59	+1	2071134..2074964	+	1276	83644854	-	HCH_02030	-	non-ribosomal peptide synthetase modules and related protein
1942	 58.83	0	2074984..2080254	+	1756	83644855	-	HCH_02031	-	non-ribosomal peptide synthetase modules and related protein
1943	 53.69	0	2080336..2081529	+	397	83644856	-	HCH_02032	-	hypothetical protein
1944	 57.41	0	2081585..2082373	+	262	83644857	azlC	HCH_02033	-	branched-chain amino acid permease (azaleucine resistance)
1945	 53.97	0	2082375..2082689	+	104	83644858	-	HCH_02035	-	hypothetical protein
1946	 54.09	0	2082581..2082739	-	52	83644859	-	HCH_02034	-	hypothetical protein
1947	 58.56	0	2082739..2083527	+	262	83644860	-	HCH_02036	-	amidohydrolase
1948	 58.97	0	2083652..2083768	+	38	83644861	-	HCH_02037	-	hypothetical protein
1949	 56.41	0	2084033..2084227	+	64	83644862	-	HCH_02038	-	hypothetical protein
1950	 55.48	0	2084299..2084727	+	142	83644863	-	HCH_02039	-	hypothetical protein
1951	 58.75	0	2084780..2085259	-	159	83644864	cdsA	HCH_02040	-	CDP-diglyceride synthetase
1952	 58.13	0	2085344..2087077	-	577	83644865	-	HCH_02042	-	ABC-type multidrug transport system, ATPase and permease components
1953	 60.43	+1	2087194..2089005	-	603	83644866	-	HCH_02044	-	ABC-type multidrug transport system, ATPase and permease components
1954	 59.17	+1	2089011..2089517	-	168	83644867	-	HCH_02045	-	hypothetical protein
1955	 55.56	0	2089788..2090381	+	197	83644868	tag	HCH_02047	-	3-methyladenine DNA glycosylase
1956	 55.22	0	2090432..2091331	+	299	83644869	-	HCH_02048	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1957	 58.86	0	2091340..2092236	+	298	83644870	-	HCH_02049	-	DMT family permease
1958	 51.85	0	2092393..2092635	+	80	83644871	-	HCH_02050	-	hypothetical protein
1959	 59.81	+1	2092655..2094055	-	466	83644872	-	HCH_02051	-	soluble pyridine nucleotide transhydrogenase
1960	 59.36	+1	2094052..2094900	-	282	83644873	-	HCH_02052	-	signal transduction protein
1961	 52.43	0	2095058..2095696	+	212	83644874	-	HCH_02053	-	hypothetical protein
1962	 55.93	0	2095693..2096586	-	297	83644875	-	HCH_02054	-	uncharacterized enzyme related to aldose 1-epimerase
1963	 53.76	0	2096725..2097282	-	185	83644876	-	HCH_02055	-	nicotinamidase-like amidase
1964	 36.26	-2	2097657..2097998	-	113	83644877	-	HCH_02056	-	hypothetical protein
1965	 54.81	0	2098522..2099811	+	429	83644878	-	HCH_02057	-	major facilitator superfamily permease
1966	 58.43	0	2099825..2100601	-	258	83644879	-	HCH_02058	-	Short-chain dehydrogenase of various substrate specificities
1967	 55.13	0	2100899..2102857	+	652	83644880	-	HCH_02059	-	protein kinase
1968	 51.82	0	2103280..2103663	+	127	83644881	-	HCH_02060	-	hypothetical protein
1969	 55.17	0	2103827..2104522	+	231	83644882	rluA1	HCH_02061	-	pseudouridylate synthases, 23S RNA-specific
1970	 47.31	-1	2104535..2104720	-	61	83644883	-	HCH_02062	-	hypothetical protein
1971	 52.80	0	2104891..2106816	+	641	83644884	htpG2	HCH_02063	-	heat shock protein 90
1972	 54.93	0	2106933..2108312	-	459	83644885	-	HCH_02064	-	hypothetical protein
1973	 35.61	-2	2108597..2108728	+	43	83644886	-	HCH_02065	-	hypothetical protein
1974	 48.58	0	2108697..2109155	+	152	83644887	-	HCH_02066	-	hypothetical protein
1975	 49.19	0	2109314..2109559	+	81	83644888	-	HCH_02067	-	hypothetical protein
1976	 52.74	0	2109608..2110210	-	200	83644889	lexA	HCH_02068	-	LexA repressor
1977	 53.26	0	2110463..2111044	+	193	83644890	-	HCH_02069	-	putative NADPH-quinone reductase (modulator of drug activity B)
1978	 51.39	0	2111234..2111377	-	47	83644891	-	HCH_02070	-	hypothetical protein
1979	 50.90	0	2111520..2111798	+	92	83644892	-	HCH_02071	-	hypothetical protein
1980	 53.33	0	2111850..2112089	-	79	83644893	-	HCH_02072	-	hypothetical protein
1981	 54.04	0	2112622..2124552	+	3976	83644894	-	HCH_02073	-	Rhs family protein
1982	 38.81	-2	2124568..2124987	+	139	83644895	-	HCH_02074	-	hypothetical protein
1983	 50.70	0	2125309..2126811	+	500	83644896	-	HCH_02075	-	Rhs family protein
1984	 37.96	-2	2126837..2127355	+	172	83644897	-	HCH_02076	-	hypothetical protein
1985	 37.50	-2	2127563..2128378	+	271	83644898	-	HCH_02077	-	hypothetical protein
1986	 40.15	-2	2128399..2128530	-	43	83644899	-	HCH_02078	-	hypothetical protein
1987	 50.00	0	2128633..2128872	-	79	83644900	-	HCH_02079	-	hypothetical protein
1988	 51.73	0	2128905..2130698	+	597	83644901	-	HCH_02080	-	Rhs family protein
1989	 32.54	-2	2131018..2131143	+	41	83644902	-	HCH_02081	-	hypothetical protein
1990	 56.41	0	2131241..2131357	-	38	83644903	-	HCH_02082	-	hypothetical protein
1991	 50.48	0	2131310..2132755	+	481	83644904	-	HCH_02083	-	Rhs family protein
1992	 37.83	-2	2132821..2133309	+	162	83644905	-	HCH_02084	-	hypothetical protein
1993	 52.22	0	2133647..2135473	+	608	83644906	-	HCH_02086	-	Rhs family protein
1994	 37.44	-2	2135473..2135910	+	145	83644907	-	HCH_02087	-	hypothetical protein
1995	 51.81	0	2135942..2137543	+	533	83644908	-	HCH_02088	-	Rhs family protein
1996	 45.57	-1	2138155..2138538	-	127	83644909	-	HCH_02089	-	hypothetical protein
1997	 57.17	0	2139316..2139789	+	157	83644910	-	HCH_02090	-	Rhs family protein
1998	 43.06	-1	2139963..2140538	+	191	83644911	-	HCH_02091	-	hypothetical protein
1999	 50.41	0	2141882..2142127	-	81	83644912	-	HCH_02092	-	hypothetical protein
2000	 50.14	0	2142160..2143968	+	602	83644913	-	HCH_02093	-	Rhs family protein
2001	 52.03	0	2144574..2144819	-	81	83644914	-	HCH_02094	-	hypothetical protein
2002	 48.51	0	2144852..2145958	+	368	83644915	-	HCH_02095	-	Rhs family protein
2003	 32.88	-2	2146051..2146269	+	72	83644916	-	HCH_02096	-	hypothetical protein
2004	 57.05	0	2146688..2147332	+	214	83644917	-	HCH_02097	-	Rhs family protein
2005	 36.30	-2	2147537..2147974	+	145	83644918	-	HCH_02098	-	hypothetical protein
2006	 59.43	+1	2148276..2149394	+	372	83644919	-	HCH_02100	-	transposase DDE domain-containing protein
2007	 54.90	0	2149473..2149574	-	33	83644920	-	HCH_02101	-	hypothetical protein
2008	 54.07	0	2149837..2150328	-	163	83644921	-	HCH_02102	-	IS116/IS110/IS902 family transposase
2009	 50.42	0	2150398..2150871	-	157	83644922	-	HCH_02103	-	transposase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.