IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1808	 60.68	+1	1928999..1929115	+	38	83644721	-	HCH_01896	-	hypothetical protein
1809	 55.62	0	1929158..1931203	-	681	83644722	metG	HCH_01897	-	methionyl-tRNA synthetase
1810	 47.18	-1	1931311..1931505	-	64	83644723	-	HCH_01898	-	hypothetical protein
1811	 57.83	0	1931468..1932565	+	365	83644724	-	HCH_01899	-	ATPase involved in chromosome partitioning
1812	 52.91	0	1932828..1933394	+	188	161897898	dcd	HCH_01900	-	deoxycytidine triphosphate deaminase
1813	 58.14	0	1933487..1934143	+	218	83644726	-	HCH_01901	-	ribulose-5-phosphate 4-epimerase and related epimerase and aldolases
1814	 53.27	0	1934220..1934816	+	198	83644727	-	HCH_01902	-	hypothetical protein
1815	 52.51	0	1934999..1936255	+	418	83644728	avtA	HCH_01903	-	valine--pyruvate transaminase
1816	 50.46	0	1936329..1937093	-	254	83644729	-	HCH_01904	-	hypothetical protein
1817	 57.79	0	1937151..1937837	-	228	83644730	purN	HCH_01905	-	phosphoribosylglycinamide formyltransferase
1818	 57.03	0	1937840..1938898	-	352	83644731	purM	HCH_01906	-	phosphoribosylaminoimidazole (AIR) synthetase
1819	 56.99	0	1939342..1940457	+	371	83644732	-	HCH_01907	-	hypothetical protein
1820	 53.97	0	1940631..1941197	+	188	83644733	-	HCH_01908	-	phosphatidylglycerophosphate synthase
1821	 53.65	0	1941234..1941932	+	232	83644734	-	HCH_01909	-	DnaA family protein
1822	 51.58	0	1942032..1942820	+	262	83644735	-	HCH_01910	-	ParA family protein
1823	 55.20	0	1942880..1943254	+	124	83644736	-	HCH_01911	-	hypothetical protein
1824	 56.01	0	1943386..1944051	-	221	83644737	-	HCH_01912	-	Uracil-DNA glycosylase
1825	 50.09	0	1944108..1944662	-	184	83644738	-	HCH_01913	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1826	 54.40	0	1944722..1945300	-	192	83644739	ligT	HCH_01914	-	2'-5' RNA ligase
1827	 55.00	0	1945313..1945552	-	79	83644740	-	HCH_01915	-	hypothetical protein
1828	 56.92	0	1945578..1948316	-	912	83644741	-	HCH_01916	-	signal transduction protein
1829	 57.59	0	1948513..1949349	-	278	83644742	nadC	HCH_01917	-	nicotinate-nucleotide pyrophosphorylase
1830	 52.62	0	1949360..1949950	-	196	83644743	-	HCH_01918	-	aspartyl protease
1831	 54.65	0	1950174..1952570	+	798	83644744	-	HCH_01919	-	hypothetical protein
1832	 52.01	0	1952748..1953320	+	190	161897897	-	HCH_01921	-	N-acetyl-anhydromuranmyl-L-alanine amidase
1833	 54.88	0	1953325..1954206	+	293	83644746	-	HCH_01922	-	membrane protein required for beta-lactamase induction
1834	 55.96	0	1954228..1954806	-	192	83644747	-	HCH_01923	-	SecY interacting protein Syd
1835	 54.65	0	1955038..1957068	+	676	83644748	-	HCH_01925	-	methyl-accepting chemotaxis protein
1836	 57.35	0	1957073..1957630	-	185	83644749	-	HCH_01926	-	hypothetical protein
1837	 57.93	0	1957660..1958598	-	312	83644750	panE2	HCH_01927	-	2-dehydropantoate 2-reductase
1838	 56.35	0	1958647..1961505	-	952	83644751	valS	HCH_01928	-	valyl-tRNA synthetase
1839	 50.64	0	1961756..1962223	-	155	83644752	-	HCH_01929	-	hypothetical protein
1840	 43.43	-1	1962372..1962797	-	141	83644753	holC	HCH_01930	-	DNA polymerase III, chi subunit
1841	 58.18	0	1962892..1964376	-	494	83644754	-	HCH_01931	-	leucyl aminopeptidase
1842	 54.17	0	1964443..1964706	+	87	83644755	-	HCH_01932	-	hypothetical protein
1843	 54.83	0	1964712..1965809	+	365	83644756	-	HCH_01933	-	permease
1844	 55.56	0	1965796..1966857	+	353	83644757	-	HCH_01934	-	permease
1845	 56.24	0	1967062..1968951	+	629	83644758	-	HCH_01935	-	methyl-accepting chemotaxis protein
1846	 54.74	0	1969033..1970508	-	491	83644759	-	HCH_01936	-	amino acid ABC transporter periplasmic protein
1847	 55.66	0	1970882..1972135	+	417	83644760	-	HCH_01937	-	ABC-type branched-chain amino acid transport system, periplasmic component
1848	 56.68	0	1972358..1972918	+	186	83644761	-	HCH_01939	-	putative intracellular protease/amidase
1849	 53.33	0	1972905..1973189	-	94	83644762	-	HCH_01938	-	uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis
1850	 55.05	0	1973380..1975023	+	547	83644763	-	HCH_01940	-	phytoene dehydrogenase and related protein
1851	 57.32	0	1975101..1975742	+	213	83644764	-	HCH_01941	-	hypothetical protein
1852	 57.01	0	1975754..1976923	-	389	83644765	-	HCH_01942	-	Zn-dependent dipeptidase
1853	 48.15	0	1977140..1977274	+	44	83644766	-	HCH_01943	-	hypothetical protein
1854	 57.82	0	1977324..1979075	-	583	83644767	-	HCH_01944	-	methyl-accepting chemotaxis protein
1855	 56.98	0	1979200..1980231	+	343	83644768	-	HCH_01945	-	transcriptional regulator
1856	 56.77	0	1980383..1981594	-	403	83644769	-	HCH_01946	-	hypothetical protein
1857	 58.70	0	1981887..1983104	+	405	83644770	aruC	HCH_01947	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1858	 56.51	0	1983167..1984180	+	337	83644771	aruF	HCH_01948	-	arginine N-succinyltransferase, alpha subunit
1859	 53.45	0	1984244..1985287	+	347	83644772	aruG	HCH_01949	-	arginine N-succinyltransferase, beta subunit
1860	 59.88	+1	1985284..1986756	+	490	83644773	aruD	HCH_01950	-	succinylglutamate 5-semialdehyde dehydrogenase
1861	 57.44	0	1986811..1988154	+	447	83644774	astB	HCH_01951	-	succinylarginine dihydrolase
1862	 55.08	0	1988339..1990108	+	589	83644775	-	HCH_01952	-	Serine/threonine protein kinase
1863	 57.49	0	1990102..1990875	+	257	83644776	-	HCH_01953	-	Serine/threonine protein phosphatase
1864	 49.72	0	1990956..1991309	+	117	83644777	-	HCH_01954	-	FHA domain-containing protein
1865	 56.78	0	1991608..1996563	+	1651	83644778	-	HCH_01955	-	large extracellular alpha-helical protein
1866	 60.23	+1	1996560..1998953	+	797	83644779	pbpC	HCH_01956	-	penicillin-binding protein 1C
1867	 52.79	0	1999145..1999843	+	232	83644780	-	HCH_01957	-	glycosyl hydrolase
1868	 52.55	0	1999917..2000504	+	195	83644781	-	HCH_01958	-	HD superfamily hydrolase
1869	 48.84	0	2000566..2000868	-	100	83644782	-	HCH_01959	-	hypothetical protein
1870	 48.55	0	2000837..2000974	-	45	83644783	-	HCH_01960	-	hypothetical protein
1871	 59.17	+1	2001026..2002012	+	328	83644784	-	HCH_01961	-	membrane-fusion protein
1872	 57.47	0	2002009..2004759	+	916	83644785	-	HCH_01962	-	ABC-type multidrug transport system, ATPase component
1873	 54.91	0	2004761..2005891	+	376	83644786	-	HCH_01963	-	ABC-type multidrug transport system, permease component
1874	 56.67	0	2005922..2006401	+	159	83644787	-	HCH_01964	-	hypothetical protein
1875	 45.57	-1	2006552..2007025	+	157	83644788	-	HCH_01966	-	hypothetical protein
1876	 43.14	-1	2006996..2007709	-	237	83644789	-	HCH_01965	-	hypothetical protein
1877	 41.67	-2	2007745..2007888	+	47	83644790	-	HCH_01967	-	hypothetical protein
1878	 55.14	0	2007933..2008409	+	158	83644791	-	HCH_01968	-	phosphatase
1879	 54.71	0	2008632..2013290	+	1552	83644792	-	HCH_01969	-	Rhs family protein
1880	 37.73	-2	2013311..2013742	+	143	83644793	-	HCH_01970	-	hypothetical protein
1881	 33.33	-2	2013746..2014261	+	171	83644794	-	HCH_01971	-	hypothetical protein
1882	 41.67	-2	2014295..2014390	-	31	83644795	-	HCH_01972	-	hypothetical protein
1883	 37.37	-2	2014320..2014418	+	32	83644796	-	HCH_01973	-	hypothetical protein
1884	 33.87	-2	2014411..2014965	+	184	83644797	-	HCH_01974	-	hypothetical protein
1885	 51.05	0	2015103..2015435	+	110	83644798	-	HCH_01975	-	hypothetical protein
1886	 56.73	0	2016186..2016809	+	207	83644799	-	HCH_01976	-	alpha/beta superfamily hydrolase/acyltransferase
1887	 58.08	0	2016856..2017635	-	259	83644800	-	HCH_01977	-	Short-chain alcohol dehydrogenase of unknown specificity
1888	 57.04	0	2017996..2018577	+	193	83644801	mdh	HCH_01978	-	malate dehydrogenase
1889	 57.23	0	2018641..2019477	-	278	83644802	-	HCH_01979	-	hypothetical protein
1890	 53.01	0	2019794..2020906	+	370	83644803	-	HCH_01980	-	aminopeptidase
1891	 56.28	0	2020975..2022669	-	564	83644804	-	HCH_01981	-	pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzyme
1892	 55.90	0	2022656..2024410	-	584	83644805	-	HCH_01982	-	amine oxidoreductase, flavin-containing
1893	 42.67	-1	2024479..2024628	-	49	83644806	-	HCH_01983	-	hypothetical protein
1894	 53.30	0	2024644..2025705	+	353	83644807	-	HCH_01984	-	hypothetical protein
1895	 56.51	0	2026232..2026546	+	104	83644808	-	HCH_01985	-	hypothetical protein
1896	 51.75	0	2026552..2027007	+	151	83644809	-	HCH_01986	-	hypothetical protein
1897	 44.16	-1	2027350..2029206	-	618	83644810	-	HCH_01987	-	phage protein
1898	 43.43	-1	2029211..2029705	-	164	83644811	-	HCH_10007	-	putative threonine efflux protein
1899	 45.78	-1	2029698..2030798	-	366	83644812	-	HCH_01988	-	phage protein
1900	 51.13	0	2031010..2031453	+	147	83644813	-	HCH_01989	-	hypothetical protein
1901	 51.45	0	2031545..2031991	+	148	83644814	-	HCH_01990	-	micrococcal nuclease-like protein
1902	 52.56	0	2032088..2032243	+	51	83644815	-	HCH_01992	-	hypothetical protein
1903	 55.74	0	2032100..2032282	-	60	83644816	-	HCH_01991	-	hypothetical protein
1904	 53.76	0	2032261..2032779	+	172	83644817	-	HCH_01993	-	histone acetyltransferase HPA2-like acetyltransferase
1905	 48.76	0	2032776..2033177	+	133	83644818	-	HCH_01994	-	hypothetical protein
1906	 48.48	0	2033197..2033394	+	65	83644819	-	HCH_01995	-	hypothetical protein
1907	 58.27	0	2033583..2034749	+	388	83644820	-	HCH_01996	-	hypothetical protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.