IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1718	 41.19	-2	1822911..1823279	+	122	83644631	-	HCH_01799	-	hypothetical protein
1719	 51.69	0	1823276..1823956	+	226	83644632	rnc	HCH_01800	-	ribonuclease III
1720	 47.10	-1	1823953..1824867	+	304	83644633	era	HCH_01801	-	GTP-binding protein Era
1721	 53.42	0	1824885..1825601	+	238	83644634	recO	HCH_01803	-	DNA repair protein RecO
1722	 54.84	0	1825641..1828514	-	957	83644635	-	HCH_01804	-	Signal transduction histidine kinase
1723	 56.00	0	1828823..1829713	+	296	83644636	cysM	HCH_01805	-	cysteine synthase B
1724	 54.06	0	1829821..1831161	+	446	83644637	rumA	HCH_01806	-	23S rRNA 5-methyluridine methyltransferase
1725	 54.44	0	1831206..1833446	+	746	83644638	relA	HCH_01807	-	GTP pyrophosphokinase
1726	 53.40	0	1833446..1834312	+	288	83644639	-	HCH_01808	-	pyrophosphatase
1727	 51.30	0	1834356..1834700	-	114	83644640	-	HCH_01809	-	hypothetical protein
1728	 54.88	0	1835020..1837665	+	881	83644641	ppc	HCH_01811	-	phosphoenolpyruvate carboxylase
1729	 55.74	0	1837820..1839229	+	469	83644642	-	HCH_01812	-	signal transduction protein
1730	 53.27	0	1839529..1840185	+	218	83644643	-	HCH_01814	-	adenylate kinase-like kinase
1731	 56.13	0	1840257..1840949	+	230	83644644	-	HCH_01815	-	inactive metal-dependent protease-like protein
1732	 50.56	0	1841077..1841877	+	266	83644645	-	HCH_01816	-	undecaprenyl pyrophosphate phosphatase
1733	 52.30	0	1842032..1842379	+	115	83644646	-	HCH_01817	-	hypothetical protein
1734	 55.43	0	1842428..1843219	+	263	83644647	-	HCH_01818	-	SAM-dependent methyltransferase
1735	 50.67	0	1843639..1844538	+	299	83644648	-	HCH_01819	-	DMT family permease
1736	 46.34	-1	1844637..1845182	+	181	83644649	-	HCH_01820	-	cytochrome B561
1737	 49.83	0	1845251..1845826	+	191	83644650	-	HCH_01821	-	hypothetical protein
1738	 51.75	0	1845887..1847260	-	457	83644651	-	HCH_01822	-	hypothetical protein
1739	 53.43	0	1847397..1848869	-	490	83644652	putP	HCH_01823	-	sodium/proline symporter
1740	 56.65	0	1848957..1852130	-	1057	83644653	putA	HCH_01824	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1741	 52.04	0	1852375..1853160	-	261	83644654	-	HCH_01825	-	AraC-type DNA-binding domain-containing protein
1742	 43.33	-1	1853142..1853411	-	89	83644655	-	HCH_01826	-	hypothetical protein
1743	 52.47	0	1853470..1855272	+	600	83644656	-	HCH_01827	-	immunoglobulin I-set domain-containing protein
1744	 50.91	0	1855486..1856367	+	293	83644657	-	HCH_01828	-	hypothetical protein
1745	 52.82	0	1856398..1857336	-	312	83644658	-	HCH_01829	-	transcriptional regulator
1746	 55.26	0	1857388..1858395	-	335	83644659	-	HCH_01830	-	ABC-type oligopeptide transport system, ATPase component
1747	 54.65	0	1858416..1859414	-	332	83644660	-	HCH_01831	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1748	 54.67	0	1859418..1860359	-	313	83644661	-	HCH_01832	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
1749	 51.53	0	1860383..1861360	-	325	83644662	-	HCH_01833	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
1750	 53.77	0	1861499..1863049	-	516	83644663	-	HCH_01834	-	ABC-type dipeptide transport system, periplasmic component
1751	 48.25	0	1863524..1863637	-	37	83644664	-	HCH_01835	-	hypothetical protein
1752	 56.08	0	1863643..1865976	+	777	83644665	htpX2	HCH_01836	-	heat shock protein HtpX
1753	 54.53	0	1866044..1868440	-	798	83644666	-	HCH_01837	-	fibronectin type III domain-containing protein
1754	 47.92	0	1868828..1868923	+	31	83644667	-	HCH_01839	-	hypothetical protein
1755	 55.05	0	1868961..1869554	+	197	83644668	gmhA1	HCH_01840	-	phosphoheptose isomerase
1756	 56.93	0	1869774..1871201	-	475	83644669	aspA	HCH_01841	-	aspartate ammonia-lyase
1757	 58.40	0	1871265..1873442	-	725	83644670	-	HCH_01842	-	P-loop ATPase fused to an acetyltransferase
1758	 52.16	0	1873465..1873719	-	84	83644671	-	HCH_01843	-	hypothetical protein
1759	 52.86	0	1873757..1874524	+	255	83644672	-	HCH_01844	-	ribulose-5-phosphate 4-epimerase and related epimerase and aldolases
1760	 51.97	0	1874521..1875078	+	185	83644673	-	HCH_01845	-	double-stranded beta-helix domain-containing protein
1761	 56.70	0	1875078..1875779	+	233	83644674	-	HCH_01846	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
1762	 45.83	-1	1875880..1876047	-	55	83644675	-	HCH_01847	-	hypothetical protein
1763	 57.01	0	1876129..1877547	-	472	83644676	-	HCH_01848	-	Signal transduction histidine kinase
1764	 54.32	0	1877581..1878252	-	223	83644677	-	HCH_01849	-	response regulator
1765	 56.35	0	1878447..1880462	-	671	83644678	-	HCH_01850	-	hypothetical protein
1766	 57.87	0	1880616..1881524	-	302	83644679	-	HCH_01851	-	AraC-type DNA-binding domain-containing protein
1767	 56.02	0	1881651..1883228	+	525	83644680	-	HCH_01852	-	NAD-dependent aldehyde dehydrogenase
1768	 58.11	0	1883346..1884455	+	369	83644681	-	HCH_01854	-	hypothetical protein
1769	 56.86	0	1884432..1886216	-	594	83644682	-	HCH_01853	-	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
1770	 51.76	0	1886306..1886674	-	122	83644683	-	HCH_01855	-	hypothetical protein
1771	 63.12	+1	1886703..1887323	-	206	83644684	-	HCH_01857	-	multimeric flavodoxin WrbA
1772	 56.02	0	1887353..1887709	-	118	83644685	arsC	HCH_01858	-	arsenate reductase
1773	 44.00	-1	1887745..1887894	-	49	83644686	-	HCH_01859	-	hypothetical protein
1774	 52.46	0	1887859..1888386	+	175	83644687	-	HCH_01860	-	Thiol-disulfide isomerase and thioredoxins
1775	 56.69	0	1888512..1891988	+	1158	83644688	dnaE	HCH_01861	-	DNA polymerase III subunit alpha
1776	 53.56	0	1892092..1893045	+	317	161897899	accA	HCH_01862	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1777	 56.73	0	1893029..1894366	+	445	83644690	-	HCH_01863	-	ATPase
1778	 47.95	0	1894375..1895373	-	332	83644691	-	HCH_01864	-	hypothetical protein
1779	 53.59	0	1895543..1897171	+	542	83644692	pyrG	HCH_01865	-	CTP synthetase
1780	 50.35	0	1897314..1898159	+	281	83644693	kdsA	HCH_01866	-	2-dehydro-3-deoxyphosphooctonate aldolase
1781	 50.54	0	1898292..1899587	+	431	83644694	eno	HCH_01867	-	enolase
1782	 55.28	0	1904567..1904935	-	122	83644695	-	HCH_10037	-	hypothetical protein
1783	 47.31	-1	1905656..1905934	+	92	83644696	-	HCH_01868	-	septum formation initiator
1784	 48.21	0	1906004..1906729	+	241	83644697	ispD	HCH_01869	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1785	 47.36	-1	1906726..1907217	+	163	83644698	ispF	HCH_01870	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1786	 49.02	0	1907219..1908187	+	322	83644699	-	HCH_01871	-	hypothetical protein
1787	 52.13	0	1908296..1909045	+	249	83644700	surE	HCH_01872	-	acid phosphatase SurE
1788	 54.40	0	1909069..1909704	+	211	83644701	pcm	HCH_01874	-	protein-L-isoaspartate O-methyltransferase
1789	 50.82	0	1909706..1910620	+	304	83644702	-	HCH_01875	-	hypothetical protein
1790	 47.80	0	1910844..1911707	+	287	83644703	-	HCH_01876	-	membrane protein related to metalloendopeptidase
1791	 50.45	0	1911778..1912776	+	332	83644704	rpoS	HCH_01877	-	nonessential primary sigma factor
1792	 51.50	0	1913035..1913601	+	188	83644705	-	HCH_01878	-	hypothetical protein
1793	 61.84	+1	1914153..1915541	+	462	83644706	-	HCH_01879	-	group II intron-encoding maturase
1794	 53.05	0	1915811..1917220	+	469	83644707	-	HCH_01880	-	TPR repeat-containing protein
1795	 50.20	0	1917331..1917585	-	84	83644708	-	HCH_01881	-	hypothetical protein
1796	 58.14	0	1917809..1918735	-	308	83644709	-	HCH_01882	-	alpha/beta superfamily hydrolase/acyltransferase
1797	 56.08	0	1918883..1919581	-	232	83644710	-	HCH_01883	-	hypothetical protein
1798	 57.92	0	1919694..1921190	-	498	83644711	-	HCH_01884	-	transcriptional regulator
1799	 56.31	0	1921261..1921926	+	221	83644712	-	HCH_01885	-	flavin-nucleotide-binding protein
1800	 61.54	+1	1921930..1922046	-	38	83644713	-	HCH_01886	-	hypothetical protein
1801	 54.25	0	1922095..1922730	-	211	83644714	nth	HCH_01887	-	endonuclease III
1802	 55.27	0	1922775..1923485	-	236	83644715	rnfE	HCH_01888	-	SoxR-reducing system protein RsxE
1803	 59.94	+1	1923543..1924196	-	217	83644716	rnfG	HCH_01889	-	NADH:ubiquinone oxidoreductase, subunit RnfG
1804	 60.42	+1	1924206..1925246	-	346	83644717	rnfD	HCH_01891	-	NADH:ubiquinone oxidoreductase, subunit RnfD
1805	 60.14	+1	1925250..1927715	-	821	83644718	rnfC	HCH_01892	-	electron transport complex protein RnfC
1806	 59.26	+1	1927733..1928326	-	197	83644719	rnfB	HCH_01893	-	NADH:ubiquinone oxidoreductase, subunit RnfB
1807	 53.09	0	1928340..1928921	-	193	83644720	rnfA	HCH_01895	-	NADH:ubiquinone oxidoreductase, subunit RnfA
1808	 60.68	+1	1928999..1929115	+	38	83644721	-	HCH_01896	-	hypothetical protein
1809	 55.62	0	1929158..1931203	-	681	83644722	metG	HCH_01897	-	methionyl-tRNA synthetase
1810	 47.18	-1	1931311..1931505	-	64	83644723	-	HCH_01898	-	hypothetical protein
1811	 57.83	0	1931468..1932565	+	365	83644724	-	HCH_01899	-	ATPase involved in chromosome partitioning
1812	 52.91	0	1932828..1933394	+	188	161897898	dcd	HCH_01900	-	deoxycytidine triphosphate deaminase
1813	 58.14	0	1933487..1934143	+	218	83644726	-	HCH_01901	-	ribulose-5-phosphate 4-epimerase and related epimerase and aldolases
1814	 53.27	0	1934220..1934816	+	198	83644727	-	HCH_01902	-	hypothetical protein
1815	 52.51	0	1934999..1936255	+	418	83644728	avtA	HCH_01903	-	valine--pyruvate transaminase
1816	 50.46	0	1936329..1937093	-	254	83644729	-	HCH_01904	-	hypothetical protein
1817	 57.79	0	1937151..1937837	-	228	83644730	purN	HCH_01905	-	phosphoribosylglycinamide formyltransferase
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.