IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1667	 58.50	0	1767153..1767911	-	252	83644580	minC	HCH_01744	-	septum formation inhibitor
1668	 57.95	0	1768099..1768626	-	175	83644581	-	HCH_01745	-	membrane-associated phospholipid phosphatase
1669	 60.82	+1	1768586..1769833	-	415	83644582	-	HCH_01746	-	glycosyltransferase
1670	 55.97	0	1770022..1771059	+	345	83644583	-	HCH_01747	-	oxidoreductase (related to aryl-alcohol dehydrogenase)
1671	 54.61	0	1771146..1772306	+	386	83644584	phaC	HCH_01749	-	Poly(3-hydroxyalkanoate) synthetase
1672	 55.76	0	1772467..1772787	+	106	83644585	-	HCH_01750	-	hypothetical protein
1673	 53.37	0	1773113..1774654	+	513	83644586	-	HCH_01751	-	methyl-accepting chemotaxis protein
1674	 54.05	0	1774780..1774890	-	36	83644587	-	HCH_01752	-	hypothetical protein
1675	 53.04	0	1774955..1777126	+	723	83644588	-	HCH_01753	-	Acetyl-CoA hydrolase
1676	 53.95	0	1777232..1777687	+	151	83644589	-	HCH_01755	-	FKBP-type peptidyl-prolyl cis-trans isomerases 2
1677	 57.61	0	1777667..1778461	-	264	83644590	-	HCH_01754	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1678	 57.49	0	1778494..1779267	-	257	83644591	-	HCH_01756	-	putative hemolysin
1679	 54.59	0	1779505..1780299	+	264	83644592	-	HCH_01757	-	response regulator
1680	 54.24	0	1780318..1781886	+	522	83644593	-	HCH_01758	-	Signal transduction histidine kinase
1681	 54.80	0	1781932..1783776	-	614	83644594	-	HCH_01759	-	Ni,Fe-hydrogenase I small subunit
1682	 56.75	0	1783804..1784559	-	251	83644595	-	HCH_01760	-	hypothetical protein
1683	 53.75	0	1785125..1786177	-	350	83644596	-	HCH_01761	-	ABC-type spermidine/putrescine transport system, ATPase components
1684	 55.19	0	1786179..1787093	-	304	83644597	argF1	HCH_01762	-	ornithine carbamoyltransferase
1685	 53.30	0	1787185..1788381	-	398	83644598	argD	HCH_01763	-	acetylornithine aminotransferase
1686	 46.42	-1	1788733..1789053	+	106	83644599	-	HCH_01764	-	glutaredoxin-like protein
1687	 50.89	0	1789090..1789818	-	242	83644600	-	HCH_01765	-	hypothetical protein
1688	 49.78	0	1789912..1792173	-	753	83644601	-	HCH_01766	-	hypothetical protein
1689	 48.42	0	1792422..1793024	-	200	83644602	-	HCH_01767	-	amino acid transporters
1690	 50.08	0	1793197..1794408	-	403	83644603	-	HCH_01768	-	putative Mg2+ and Co2+ transporter CorB
1691	 49.44	0	1794562..1795368	-	268	83644604	-	HCH_01769	-	ABC-type uncharacterized transport system, permease component
1692	 50.90	0	1795612..1796994	+	460	83644605	ffh	HCH_01771	-	signal recognition particle protein
1693	 47.18	-1	1797008..1797361	+	117	83644606	rpsP	HCH_01772	-	ribosomal protein S16
1694	 47.51	-1	1797383..1797904	+	173	83644607	rimM	HCH_01773	-	16S rRNA processing protein RimM
1695	 48.52	0	1797879..1798655	+	258	83644608	trmD	HCH_01774	-	tRNA (guanine-N1)-methyltransferase
1696	 46.50	-1	1798685..1799041	+	118	83644609	rplS	HCH_01775	-	50S ribosomal protein L19
1697	 51.23	0	1799187..1800041	+	284	83644610	xerD	HCH_01776	-	tyrosine recombinase XerD
1698	 51.61	0	1800189..1800932	+	247	83644611	dsbC	HCH_01777	-	protein-disulfide isomerase
1699	 49.45	0	1801440..1802630	+	396	83644612	-	HCH_01778	-	aminotransferase
1700	 52.78	0	1802683..1803978	+	431	83644613	thrA	HCH_01779	-	homoserine dehydrogenase
1701	 52.69	0	1804083..1805477	+	464	83644614	thrC	HCH_01780	-	threonine synthase
1702	 54.85	0	1805663..1807321	+	552	83644615	recJ	HCH_01781	-	single-stranded-DNA-specific exonuclease RecJ
1703	 53.20	0	1807639..1808544	+	301	83644616	prfB	HCH_01782	-	peptide chain release factor 2
1704	 51.71	0	1808616..1810139	+	507	83644617	lysS	HCH_01783	-	lysyl-tRNA synthetase
1705	 53.28	0	1810182..1810943	+	253	83644618	ung	HCH_01784	-	uracil-DNA glycosylase
1706	 54.02	0	1810985..1811830	-	281	83644619	-	HCH_01785	-	signal transduction protein
1707	 54.48	0	1811977..1812969	-	330	83644620	-	HCH_01786	-	aminomethyltransferase related to GcvT
1708	 52.08	0	1812985..1813416	-	143	83644621	-	HCH_01787	-	hypothetical protein
1709	 48.66	0	1813394..1813654	-	86	83644622	-	HCH_01788	-	hypothetical protein
1710	 56.22	0	1813768..1815384	-	538	83644623	nadB	HCH_01789	-	L-aspartate oxidase
1711	 53.66	0	1815569..1816237	+	222	83644624	algU	HCH_01790	-	RNA polymerase sigma factor RpoE
1712	 57.35	0	1816356..1816988	+	210	83644625	mucA	HCH_01791	-	sigma factor algU negative regulatory protein MucA
1713	 53.64	0	1816992..1818020	+	342	83644626	mucB	HCH_01792	-	sigma factor algU negative regulatory protein MucB
1714	 51.26	0	1818017..1818451	+	144	83644627	mucC	HCH_01793	-	sigma factor algU negative regulatory protein MucC
1715	 53.12	0	1818602..1820011	+	469	83644628	mucD	HCH_01795	-	serine protease MucD precursor
1716	 51.72	0	1820213..1822012	+	599	83644629	lepA	HCH_01797	-	GTP-binding protein LepA
1717	 48.18	0	1822061..1822828	+	255	83644630	lepB	HCH_01798	-	signal peptidase I
1718	 41.19	-2	1822911..1823279	+	122	83644631	-	HCH_01799	-	hypothetical protein
1719	 51.69	0	1823276..1823956	+	226	83644632	rnc	HCH_01800	-	ribonuclease III
1720	 47.10	-1	1823953..1824867	+	304	83644633	era	HCH_01801	-	GTP-binding protein Era
1721	 53.42	0	1824885..1825601	+	238	83644634	recO	HCH_01803	-	DNA repair protein RecO
1722	 54.84	0	1825641..1828514	-	957	83644635	-	HCH_01804	-	Signal transduction histidine kinase
1723	 56.00	0	1828823..1829713	+	296	83644636	cysM	HCH_01805	-	cysteine synthase B
1724	 54.06	0	1829821..1831161	+	446	83644637	rumA	HCH_01806	-	23S rRNA 5-methyluridine methyltransferase
1725	 54.44	0	1831206..1833446	+	746	83644638	relA	HCH_01807	-	GTP pyrophosphokinase
1726	 53.40	0	1833446..1834312	+	288	83644639	-	HCH_01808	-	pyrophosphatase
1727	 51.30	0	1834356..1834700	-	114	83644640	-	HCH_01809	-	hypothetical protein
1728	 54.88	0	1835020..1837665	+	881	83644641	ppc	HCH_01811	-	phosphoenolpyruvate carboxylase
1729	 55.74	0	1837820..1839229	+	469	83644642	-	HCH_01812	-	signal transduction protein
1730	 53.27	0	1839529..1840185	+	218	83644643	-	HCH_01814	-	adenylate kinase-like kinase
1731	 56.13	0	1840257..1840949	+	230	83644644	-	HCH_01815	-	inactive metal-dependent protease-like protein
1732	 50.56	0	1841077..1841877	+	266	83644645	-	HCH_01816	-	undecaprenyl pyrophosphate phosphatase
1733	 52.30	0	1842032..1842379	+	115	83644646	-	HCH_01817	-	hypothetical protein
1734	 55.43	0	1842428..1843219	+	263	83644647	-	HCH_01818	-	SAM-dependent methyltransferase
1735	 50.67	0	1843639..1844538	+	299	83644648	-	HCH_01819	-	DMT family permease
1736	 46.34	-1	1844637..1845182	+	181	83644649	-	HCH_01820	-	cytochrome B561
1737	 49.83	0	1845251..1845826	+	191	83644650	-	HCH_01821	-	hypothetical protein
1738	 51.75	0	1845887..1847260	-	457	83644651	-	HCH_01822	-	hypothetical protein
1739	 53.43	0	1847397..1848869	-	490	83644652	putP	HCH_01823	-	sodium/proline symporter
1740	 56.65	0	1848957..1852130	-	1057	83644653	putA	HCH_01824	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1741	 52.04	0	1852375..1853160	-	261	83644654	-	HCH_01825	-	AraC-type DNA-binding domain-containing protein
1742	 43.33	-1	1853142..1853411	-	89	83644655	-	HCH_01826	-	hypothetical protein
1743	 52.47	0	1853470..1855272	+	600	83644656	-	HCH_01827	-	immunoglobulin I-set domain-containing protein
1744	 50.91	0	1855486..1856367	+	293	83644657	-	HCH_01828	-	hypothetical protein
1745	 52.82	0	1856398..1857336	-	312	83644658	-	HCH_01829	-	transcriptional regulator
1746	 55.26	0	1857388..1858395	-	335	83644659	-	HCH_01830	-	ABC-type oligopeptide transport system, ATPase component
1747	 54.65	0	1858416..1859414	-	332	83644660	-	HCH_01831	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1748	 54.67	0	1859418..1860359	-	313	83644661	-	HCH_01832	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
1749	 51.53	0	1860383..1861360	-	325	83644662	-	HCH_01833	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
1750	 53.77	0	1861499..1863049	-	516	83644663	-	HCH_01834	-	ABC-type dipeptide transport system, periplasmic component
1751	 48.25	0	1863524..1863637	-	37	83644664	-	HCH_01835	-	hypothetical protein
1752	 56.08	0	1863643..1865976	+	777	83644665	htpX2	HCH_01836	-	heat shock protein HtpX
1753	 54.53	0	1866044..1868440	-	798	83644666	-	HCH_01837	-	fibronectin type III domain-containing protein
1754	 47.92	0	1868828..1868923	+	31	83644667	-	HCH_01839	-	hypothetical protein
1755	 55.05	0	1868961..1869554	+	197	83644668	gmhA1	HCH_01840	-	phosphoheptose isomerase
1756	 56.93	0	1869774..1871201	-	475	83644669	aspA	HCH_01841	-	aspartate ammonia-lyase
1757	 58.40	0	1871265..1873442	-	725	83644670	-	HCH_01842	-	P-loop ATPase fused to an acetyltransferase
1758	 52.16	0	1873465..1873719	-	84	83644671	-	HCH_01843	-	hypothetical protein
1759	 52.86	0	1873757..1874524	+	255	83644672	-	HCH_01844	-	ribulose-5-phosphate 4-epimerase and related epimerase and aldolases
1760	 51.97	0	1874521..1875078	+	185	83644673	-	HCH_01845	-	double-stranded beta-helix domain-containing protein
1761	 56.70	0	1875078..1875779	+	233	83644674	-	HCH_01846	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
1762	 45.83	-1	1875880..1876047	-	55	83644675	-	HCH_01847	-	hypothetical protein
1763	 57.01	0	1876129..1877547	-	472	83644676	-	HCH_01848	-	Signal transduction histidine kinase
1764	 54.32	0	1877581..1878252	-	223	83644677	-	HCH_01849	-	response regulator
1765	 56.35	0	1878447..1880462	-	671	83644678	-	HCH_01850	-	hypothetical protein
1766	 57.87	0	1880616..1881524	-	302	83644679	-	HCH_01851	-	AraC-type DNA-binding domain-containing protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.