IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1568	 59.31	+1	1644085..1645212	-	375	83644481	-	HCH_01635	-	ABC-type Fe3+ transport system, periplasmic component
1569	 60.72	+1	1645205..1646752	-	515	83644482	-	HCH_01636	-	Signal transduction histidine kinase
1570	 57.29	0	1646625..1647296	-	223	83644483	-	HCH_01637	-	response regulator
1571	 57.85	0	1647658..1648644	+	328	83644484	-	HCH_01639	-	hypothetical protein
1572	 59.36	+1	1648650..1649087	+	145	83644485	-	HCH_01640	-	hypothetical protein
1573	 59.70	+1	1649087..1650622	+	511	83644486	-	HCH_01641	-	hypothetical protein
1574	 61.08	+1	1650901..1656792	-	1963	83644487	-	HCH_01642	-	choline dehydrogenase-like flavoprotein
1575	 56.78	0	1657266..1659065	+	599	83644488	-	HCH_01644	-	Signal transduction histidine kinase
1576	 58.04	0	1659082..1659753	-	223	83644489	-	HCH_01645	-	response regulator
1577	 56.90	0	1660063..1661373	-	436	83644490	serA	HCH_01646	-	D-3-phosphoglycerate dehydrogenase
1578	 56.27	0	1661661..1663064	+	467	83644491	-	HCH_01647	-	FAD/FMN-containing dehydrogenase
1579	 58.41	0	1663101..1663754	+	217	83644492	-	HCH_01648	-	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
1580	 56.47	0	1664013..1665758	+	581	83644493	-	HCH_01649	-	methyl-accepting chemotaxis protein
1581	 51.91	0	1665875..1666579	-	234	83644494	-	HCH_01650	-	protein of unknown fuction
1582	 57.72	0	1666867..1667760	-	297	83644495	-	HCH_01651	-	transcriptional regulator
1583	 56.13	0	1667907..1668371	+	154	83644496	-	HCH_01652	-	hypothetical protein
1584	 56.99	0	1668801..1671074	+	757	83644497	glcB	HCH_01653	-	malate synthase G
1585	 56.62	0	1671167..1671634	-	155	83644498	-	HCH_01654	-	transcriptional regulator
1586	 57.53	0	1671851..1673623	+	590	83644499	asnB1	HCH_01655	-	asparagine synthase (glutamine-hydrolyzing)
1587	 58.32	0	1673707..1675467	+	586	83644500	-	HCH_01656	-	D-alanine-D-alanine ligase and related ATP-grasp enzyme
1588	 55.83	0	1675478..1676695	+	405	83644501	-	HCH_01657	-	cellulase M-like protein
1589	 54.82	0	1676699..1677466	-	255	83644502	-	HCH_01658	-	amino acid ABC transporter periplasmic protein
1590	 60.56	+1	1677724..1678608	-	294	83644503	-	HCH_01659	-	molybdopterin/thiamine biosynthesis family protein
1591	 39.78	-2	1678640..1678732	+	30	83644504	-	HCH_01660	-	hypothetical protein
1592	 54.97	0	1678868..1679884	+	338	83644505	-	HCH_01662	-	chemotaxis response regulator
1593	 52.85	0	1679990..1680901	+	303	83644506	-	HCH_01663	-	response regulator
1594	 50.83	0	1681061..1681483	+	140	83644507	-	HCH_01664	-	hypothetical protein
1595	 56.20	0	1681658..1683004	+	448	83644508	-	HCH_01665	-	protein kinase
1596	 50.30	0	1683173..1683337	+	54	83644509	-	HCH_01666	-	hypothetical protein
1597	 59.81	+1	1683588..1684331	+	247	83644510	sfp	HCH_01667	-	phosphopantetheinyl transferase
1598	 56.70	0	1684355..1685167	+	270	83644511	-	HCH_01668	-	enoyl-CoA hydratase
1599	 57.04	0	1685216..1686544	-	442	83644512	ugpQ	HCH_01669	-	glycerophosphoryl diester phosphodiesterase
1600	 52.25	0	1686666..1686776	+	36	83644513	-	HCH_01670	-	hypothetical protein
1601	 56.88	0	1686944..1687822	-	292	83644514	-	HCH_01671	-	immunoglobulin I-set domain/fibronectin type III domain-containing protein
1602	 48.70	0	1688174..1688557	+	127	83644515	-	HCH_01672	-	hypothetical protein
1603	 59.25	+1	1688625..1691009	-	794	83644516	-	HCH_01673	-	chitinase
1604	 54.41	0	1691300..1691503	-	67	83644517	-	HCH_01674	-	uncharacterized protein, 4-oxalocrotonate tautomerase-like protein
1605	 51.27	0	1691544..1692446	-	300	83644518	-	HCH_01675	-	DMT family permease
1606	 56.87	0	1692470..1693786	-	438	83644519	-	HCH_01676	-	transcriptional regulator
1607	 56.79	0	1693790..1694710	-	306	83644520	-	HCH_01677	-	deoxygenase
1608	 54.07	0	1694769..1695260	-	163	83644521	-	HCH_01678	-	lactoylglutathione lyase
1609	 60.23	+1	1695278..1696396	-	372	83644522	-	HCH_01681	-	L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenase
1610	 43.75	-1	1696691..1696786	+	31	83644523	-	HCH_01682	-	hypothetical protein
1611	 53.95	0	1696801..1697256	+	151	83644524	-	HCH_01683	-	Acyl dehydratase
1612	 51.04	0	1697296..1697487	-	63	83644525	-	HCH_01684	-	hypothetical protein
1613	 54.14	0	1697684..1698769	+	361	83644526	-	HCH_01685	-	permease
1614	 57.39	0	1698803..1700602	-	599	83644527	-	HCH_01686	-	Acyl-CoA dehydrogenase
1615	 41.21	-2	1700776..1701600	+	274	83644528	-	HCH_01687	-	hypothetical protein
1616	 41.88	-2	1701726..1701842	-	38	83644529	-	HCH_01688	-	hypothetical protein
1617	 56.98	0	1701846..1718339	+	5497	83644530	-	HCH_01692	-	Rhs family protein
1618	 45.14	-1	1719122..1720315	+	397	83644531	-	HCH_01693	-	glycosyl transferase
1619	 58.56	0	1720380..1721699	-	439	83644532	-	HCH_01694	-	Na+/H+ antiporter
1620	 58.60	0	1722076..1723761	+	561	83644533	-	HCH_01695	-	subtilisin-like serine protease
1621	 53.94	0	1723778..1725412	-	544	83644534	-	HCH_01696	-	sigma54-dependent transcription regulator RtcR
1622	 50.76	0	1725877..1726008	-	43	83644535	-	HCH_01697	-	hypothetical protein
1623	 49.10	0	1726008..1726451	-	147	83644536	-	HCH_01698	-	hypothetical protein
1624	 46.36	-1	1726486..1726815	-	109	83644537	-	HCH_01699	-	hypothetical protein
1625	 51.40	0	1726996..1727886	-	296	83644538	-	HCH_01700	-	transcriptional regulator
1626	 48.60	0	1727894..1728502	-	202	83644539	-	HCH_01701	-	multidrug ABC transporter
1627	 58.10	0	1728817..1728921	+	34	83644540	-	HCH_01702	-	hypothetical protein
1628	 45.67	-1	1728949..1729410	+	153	83644541	-	HCH_01703	-	Fe2+/Zn2+ uptake regulation protein
1629	 49.52	0	1729504..1729923	+	139	83644542	hisI2	HCH_10001	-	phosphoribosyl-AMP cyclohydrolase
1630	 46.89	-1	1729926..1731260	+	444	83644543	-	HCH_01704	-	dihydroorotase
1631	 46.01	-1	1731314..1732228	+	304	83644544	-	HCH_01706	-	putative GTP cyclohydrolase
1632	 48.12	0	1732225..1732650	+	141	83644545	dksA	HCH_01707	-	DnaK suppressor protein
1633	 51.38	0	1732863..1734275	+	470	83644546	-	HCH_01708	-	membrane protein related to metalloendopeptidase
1634	 53.36	0	1734918..1737344	+	808	83644547	rnr1	HCH_01709	-	ribonuclease R
1635	 56.21	0	1737450..1738166	+	238	83644548	spoU	HCH_01710	-	rRNA methylases
1636	 52.68	0	1738293..1738721	+	142	83644549	rpsF	HCH_01711	-	ribosomal protein S6
1637	 51.08	0	1738739..1738969	+	76	83644550	rpsR	HCH_01712	-	ribosomal protein S18
1638	 49.66	0	1739092..1739538	+	148	83644551	rplI	HCH_01713	-	ribosomal protein L9
1639	 52.10	0	1739679..1741106	+	475	83644552	dnaB	HCH_01714	-	replicative DNA helicase
1640	 54.40	0	1741106..1742230	+	374	83644553	alr	HCH_01715	-	alanine racemase
1641	 54.03	0	1742421..1743338	+	305	83644554	-	HCH_01716	-	dTDP-4-dehydrorhamnose reductase-like protein
1642	 49.74	0	1743335..1744114	-	259	83644555	-	HCH_01717	-	cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase
1643	 51.82	0	1744259..1745275	-	338	83644556	hemN1	HCH_01718	-	coproporphyrinogen III oxidase-like protein
1644	 51.25	0	1745666..1746307	+	213	83644557	-	HCH_01719	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1645	 45.85	-1	1746314..1747048	-	244	83644558	-	HCH_01720	-	amino acid ABC transporter periplasmic protein
1646	 46.37	-1	1747234..1747977	-	247	83644559	-	HCH_01721	-	amino acid ABC transporter periplasmic protein
1647	 53.94	0	1748351..1749442	-	363	83644560	-	HCH_01722	-	translation-associated GTPase
1648	 55.27	0	1749684..1750271	-	195	83644561	pth	HCH_01723	-	peptidyl-tRNA hydrolase
1649	 50.56	0	1750278..1750904	-	208	83644562	rplY	HCH_01725	-	50S ribosomal protein L25/general stress protein Ctc
1650	 53.65	0	1751050..1751994	-	314	83644563	prs	HCH_01726	-	phosphoribosylpyrophosphate synthetase
1651	 49.49	0	1752160..1753050	-	296	83644564	ispE	HCH_01727	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
1652	 54.27	0	1753102..1753722	-	206	83644565	lolB	HCH_01728	-	outer membrane lipoprotein LolB
1653	 54.41	0	1753808..1755586	-	592	83644566	-	HCH_01729	-	TPR repeat-containing protein
1654	 56.62	0	1755856..1757229	-	457	83644567	-	HCH_01730	-	hypothetical protein
1655	 56.78	0	1755928..1757202	+	424	161897900	hemA	HCH_01731	-	glutamyl-tRNA reductase
1656	 53.55	0	1757281..1758363	+	360	83644569	prfA	HCH_01733	-	peptide chain release factor 1
1657	 59.33	+1	1758386..1759216	+	276	83644570	hemK	HCH_01734	-	methylase of polypeptide chain release factors
1658	 56.57	0	1759246..1759998	+	250	83644571	moeB	HCH_01736	-	molybdopterin biosynthesis protein MoeB
1659	 54.98	0	1759978..1761423	-	481	83644572	phrB2	HCH_01735	-	deoxyribodipyrimidine photolyase
1660	 57.65	0	1761563..1762072	+	169	83644573	-	HCH_01738	-	hypothetical protein
1661	 54.66	0	1762067..1763449	-	460	83644574	-	HCH_01737	-	ATPase related to phosphate starvation-inducible protein PhoH
1662	 52.17	0	1763713..1764381	-	222	83644575	-	HCH_01739	-	transcriptional regulator
1663	 51.92	0	1764545..1765012	+	155	83644576	-	HCH_01740	-	CBS domain-containing protein
1664	 53.11	0	1765019..1765645	-	208	83644577	-	HCH_01741	-	StAR-related lipid-transfer domain-containing protein
1665	 51.81	0	1766006..1766254	-	82	83644578	minE	HCH_01742	-	cell division topological specificity factor MinE
1666	 52.94	0	1766251..1767066	-	271	83644579	minD	HCH_01743	-	septum site-determining protein MinD
1667	 58.50	0	1767153..1767911	-	252	83644580	minC	HCH_01744	-	septum formation inhibitor
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.