IslandPathversion 1.0

IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 53.37 STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1312	 53.41	0	1379535..1379783	-	82	83644225	-	HCH_01372	-	hypothetical protein
1313	 60.40	+1	1379957..1381552	+	531	83644226	-	HCH_01373	-	anaerobic nitric oxide reductase transcription regulator
1314	 54.05	0	1381678..1382208	+	176	83644227	-	HCH_01374	-	hypothetical protein
1315	 52.49	0	1382296..1383057	+	253	83644228	-	HCH_01375	-	amino acid ABC transporter periplasmic protein
1316	 53.82	0	1383361..1383687	+	108	83644229	-	HCH_01376	-	hypothetical protein
1317	 41.00	-2	1384048..1384308	-	86	83644230	-	HCH_01377	-	hypothetical protein
1318	 47.76	0	1384779..1385492	-	237	83644231	-	HCH_01378	-	transposase
1319	 35.29	-2	1385760..1385912	-	50	83644232	-	HCH_01379	-	hypothetical protein
1320	 42.50	-1	1386066..1386785	-	239	83644233	-	HCH_01380	-	Rhs family protein
1321	 56.46	0	1386798..1386944	-	48	83644234	-	HCH_01381	-	hypothetical protein
1322	 46.51	-1	1386927..1387055	+	42	83644235	-	HCH_01382	-	hypothetical protein
1323	 53.49	0	1387559..1391854	-	1431	83644236	-	HCH_01383	-	Rhs family protein
1324	 47.68	-1	1391978..1393078	-	366	83644237	-	HCH_01384	-	hypothetical protein
1325	 40.80	-2	1393071..1394195	-	374	83644238	-	HCH_01385	-	hypothetical protein
1326	 45.12	-1	1394604..1395044	+	146	83644239	-	HCH_01386	-	histone acetyltransferase HPA2-like acetyltransferase
1327	 52.14	0	1395064..1395531	+	155	83644240	-	HCH_01387	-	hypothetical protein
1328	 59.15	+1	1395579..1396376	-	265	83644241	ribB	HCH_01388	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1329	 58.33	0	1396657..1396932	-	91	83644242	-	HCH_01389	-	hypothetical protein
1330	 57.51	0	1397099..1398517	+	472	83644243	-	HCH_01390	-	Signal transduction histidine kinase
1331	 56.48	0	1398489..1399028	+	179	83644244	-	HCH_01391	-	response regulator
1332	 60.64	+1	1399308..1400219	-	303	83644245	-	HCH_01392	-	uncharacterized enzyme involved in pigment biosynthesis
1333	 59.91	+1	1400216..1401310	-	364	83644246	-	HCH_01393	-	ribokinase family sugar kinase
1334	 62.96	+1	1401385..1403352	-	655	83644247	-	HCH_01394	-	iron-hydroxamate transporter permease subunit
1335	 60.19	+1	1403400..1404356	-	318	83644248	-	HCH_01395	-	ABC-type Fe3+-citrate transport system, periplasmic component
1336	 60.85	+1	1404411..1405184	-	257	83644249	-	HCH_01396	-	ABC-type cobalamin/Fe3+-siderophores transport system, ATPase components
1337	 61.05	+1	1405171..1405953	-	260	83644250	-	HCH_01397	-	hypothetical protein
1338	 56.86	0	1406201..1408453	+	750	83644251	-	HCH_01398	-	Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
1339	 58.64	0	1408697..1410502	-	601	83644252	-	HCH_01399	-	thiamine pyrophosphate-requiring enzyme
1340	 58.27	0	1410705..1411097	-	130	83644253	-	HCH_01400	-	hypothetical protein
1341	 55.69	0	1411094..1411603	-	169	83644254	-	HCH_01401	-	hypothetical protein
1342	 57.41	0	1411610..1412344	-	244	83644255	-	HCH_01402	-	hypothetical protein
1343	 57.33	0	1412435..1413484	+	349	83644256	-	HCH_01403	-	hypothetical protein
1344	 57.83	0	1413592..1414134	+	180	83644257	-	HCH_01404	-	phosphatase
1345	 57.38	0	1414237..1414785	+	182	83644258	-	HCH_01405	-	flavoprotein
1346	 52.09	0	1414789..1415337	-	182	83644259	-	HCH_01406	-	hypothetical protein
1347	 48.85	0	1415489..1415881	-	130	83644260	-	HCH_01407	-	hypothetical protein
1348	 54.55	0	1415937..1416398	-	153	83644261	-	HCH_01408	-	hypothetical protein
1349	 55.12	0	1416463..1416999	-	178	83644262	-	HCH_01409	-	metal-sulfur cluster biosynthetic protein
1350	 56.01	0	1417005..1417370	-	121	83644263	-	HCH_01411	-	hypothetical protein
1351	 58.19	0	1417384..1418622	-	412	83644264	csdB	HCH_01412	-	selenocysteine lyase
1352	 57.05	0	1418619..1419938	-	439	83644265	sufD	HCH_01413	-	FeS assembly protein SufD
1353	 55.47	0	1419950..1420708	-	252	83644266	sufC	HCH_01414	-	FeS assembly ATPase SufC
1354	 51.75	0	1420756..1420869	+	37	83644267	-	HCH_01415	-	hypothetical protein
1355	 55.14	0	1420866..1422314	-	482	83644268	sufB	HCH_01416	-	cysteine desulfurase activator complex subunit SufB
1356	 55.62	0	1422613..1423092	+	159	83644269	-	HCH_01417	-	transcriptional regulator
1357	 52.05	0	1423444..1423785	+	113	83644270	-	HCH_01419	-	hypothetical protein
1358	 40.31	-2	1423763..1423891	-	42	83644271	-	HCH_01418	-	hypothetical protein
1359	 56.29	0	1423885..1424838	+	317	83644272	-	HCH_01420	-	hypothetical protein
1360	 51.35	0	1424904..1425386	-	160	83644273	slpA	HCH_01421	-	FKBP-type peptidyl-prolyl cis-trans isomerases 2
1361	 53.08	0	1425463..1425933	-	156	83644274	-	HCH_01422	-	hypothetical protein
1362	 58.01	0	1425969..1426904	-	311	83644275	-	HCH_01423	-	hypothetical protein
1363	 55.19	0	1426850..1429201	-	783	83644276	-	HCH_01424	-	signal transduction protein
1364	 57.63	0	1429194..1430012	-	272	83644277	-	HCH_01425	-	hypothetical protein
1365	 54.48	0	1430177..1431538	-	453	83644278	-	HCH_01427	-	sigma 54-dependent transcriptional activator
1366	 54.72	0	1431535..1432053	-	172	83644279	-	HCH_01428	-	hypothetical protein
1367	 55.49	0	1432050..1433579	-	509	83644280	-	HCH_01429	-	Signal transduction histidine kinase
1368	 52.48	0	1433911..1434213	+	100	83644281	-	HCH_01430	-	calcium-binding EF-hand domain-containing protein
1369	 53.86	0	1434273..1434764	+	163	83644282	-	HCH_01431	-	phospholipid-binding domain-containing protein
1370	 55.88	0	1434783..1435292	+	169	83644283	-	HCH_01432	-	Outer membrane protein and related peptidoglycan-associated (lipo)protein
1371	 47.69	-1	1435519..1435929	+	136	83644284	-	HCH_01433	-	hypothetical protein
1372	 59.67	+1	1435989..1436945	+	318	83644285	-	HCH_01434	-	TPR repeat-containing protein
1373	 53.56	0	1436948..1438252	-	434	83644286	-	HCH_01435	-	Signal transduction histidine kinase
1374	 54.19	0	1438252..1438932	-	226	83644287	-	HCH_01436	-	response regulator
1375	 41.54	-2	1438935..1439129	+	64	83644288	-	HCH_01437	-	hypothetical protein
1376	 50.00	0	1439317..1439766	+	149	83644289	-	HCH_01438	-	hypothetical protein
1377	 48.15	0	1439797..1440930	-	377	83644290	-	HCH_01439	-	acyltransferase
1378	 54.99	0	1441176..1442117	+	313	83644291	-	HCH_01440	-	hypothetical protein
1379	 55.41	0	1442163..1442624	-	153	83644292	soxR	HCH_01441	-	redox-sensitive transcriptional activator SoxR
1380	 60.14	+1	1442705..1443286	+	193	83644293	-	HCH_01442	-	flavoprotein
1381	 61.11	+1	1443296..1443565	-	89	83644294	-	HCH_01443	-	hypothetical protein
1382	 56.48	0	1443843..1446551	-	902	83644295	-	HCH_01444	-	ATP-dependent transcriptional regulator
1383	 55.95	0	1446857..1447966	+	369	83644296	adhC	HCH_01446	-	Zn-dependent alcohol dehydrogenase, class III
1384	 55.44	0	1447985..1448830	+	281	83644297	-	HCH_01447	-	esterase
1385	 54.90	0	1448873..1449280	+	135	83644298	-	HCH_01448	-	hypothetical protein
1386	 48.59	0	1449497..1450027	-	176	83644299	-	HCH_01449	-	hypothetical protein
1387	 58.74	0	1450079..1450444	+	121	83644300	-	HCH_01450	-	hypothetical protein
1388	 37.84	-2	1451729..1451839	-	36	83644301	-	HCH_01451	-	hypothetical protein
1389	 40.07	-2	1451887..1452183	+	98	83644302	-	HCH_01452	-	hypothetical protein
1390	 33.33	-2	1452707..1452892	+	61	83644303	-	HCH_01453	-	hypothetical protein
1391	 35.35	-2	1452876..1452974	+	32	83644304	-	HCH_01454	-	hypothetical protein
1392	 38.68	-2	1453726..1454043	+	105	83644305	-	HCH_01455	-	hypothetical protein
1393	 40.05	-2	1454580..1454951	+	123	83644306	-	HCH_01456	-	hypothetical protein
1394	 38.51	-2	1455079..1455600	+	173	83644307	-	HCH_01457	-	hypothetical protein
1395	 52.65	0	1456499..1457440	+	313	83644308	-	HCH_01459	-	hypothetical protein
1396	 49.45	0	1457466..1458104	-	212	83644309	-	HCH_01460	-	transposase
1397	 44.44	-1	1458034..1458240	-	68	83644310	-	HCH_01461	-	hypothetical protein
1398	 29.17	-2	1458394..1458489	+	31	83644311	-	HCH_01463	-	hypothetical protein
1399	 44.09	-1	1458513..1458893	-	126	83644312	-	HCH_01464	-	hypothetical protein
1400	 57.32	0	1459291..1460499	+	402	83644313	-	HCH_01465	-	membrane-fusion protein
1401	 57.72	0	1460496..1463615	+	1039	83644314	-	HCH_01466	-	cation/multidrug efflux pump
1402	 54.95	0	1463625..1464401	-	258	83644315	-	HCH_01467	-	amino acid ABC transporter periplasmic protein
1403	 59.40	+1	1464373..1466133	-	586	83644316	-	HCH_01468	-	ABC-type sugar transport system, periplasmic component
1404	 62.73	+1	1466247..1467542	-	431	83644317	-	HCH_01469	-	NADH:flavin oxidoreductase
1405	 57.64	0	1467673..1468104	-	143	83644318	-	HCH_01470	-	hypothetical protein
1406	 56.77	0	1468251..1469321	+	356	83644319	-	HCH_01471	-	spermidine/putrescine-binding periplasmic protein
1407	 57.03	0	1469490..1470620	+	376	83644320	-	HCH_01472	-	ABC-type spermidine/putrescine transport system, ATPase components
1408	 56.91	0	1470630..1471490	+	286	83644321	-	HCH_01473	-	ABC-type spermidine/putrescine transport system, permease component I
1409	 57.54	0	1471501..1472355	+	284	83644322	-	HCH_01474	-	ABC-type spermidine/putrescine transport system, permease component II
1410	 58.28	0	1472619..1473488	-	289	83644323	-	HCH_01475	-	hypothetical protein
1411	 55.27	0	1473609..1474433	+	274	83644324	-	HCH_01476	-	amino acid ABC transporter periplasmic protein
53.37	MEAN

5.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.