IslandPath Analysis: Hahella chejuensis KCTC 2396



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.37   STD DEV: 5.65
Hahella chejuensis KCTC 2396, complete genome - 1..7215267
6778 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
993	 51.94	0	1035267..1036346	-	359	83643906	-	HCH_01034	-	Signal transduction histidine kinase, nitrogen specific
994	 50.57	0	1036598..1037125	-	175	83643907	-	HCH_01035	-	hypothetical protein
995	 52.45	0	1037234..1038640	-	468	83643908	glnA	HCH_01036	-	glutamine synthetase, type I
996	 50.72	0	1039095..1040912	+	605	83643909	-	HCH_01037	-	membrane GTPase involved in stress response
997	 48.85	0	1041012..1041971	+	319	83643910	pip	HCH_01038	-	proline iminopeptidase
998	 48.07	0	1042065..1042505	+	146	83643911	dtd	HCH_01039	-	D-tyrosyl-tRNA deacylase
999	 38.89	-2	1043199..1043306	-	35	83643912	-	HCH_01040	-	hypothetical protein
1000	 44.94	-1	1043251..1044198	+	315	83643913	-	HCH_01041	-	Outer membrane protein (porin)
1001	 45.71	-1	1044310..1045230	+	306	83643914	-	HCH_01042	-	hypothetical protein
1002	 41.70	-2	1045254..1046042	+	262	83643915	-	HCH_01043	-	hypothetical protein
1003	 50.14	0	1046142..1049033	+	963	83643916	glnE	HCH_01044	-	glutamine synthetase adenylyltransferase
1004	 50.65	0	1049131..1050054	+	307	83643917	ilvE1	HCH_01045	-	branched-chain amino acid aminotransferase
1005	 52.63	0	1050090..1051136	+	348	83643918	rfaF	HCH_01046	-	lipopolysaccharide heptosyltransferase II
1006	 51.07	0	1051129..1052160	+	343	83643919	rfaC	HCH_01047	-	lipopolysaccharide heptosyltransferase I
1007	 46.14	-1	1052157..1052921	+	254	83643920	-	HCH_01048	-	cell wall biosynthesis glycosyltransferase
1008	 47.35	-1	1052908..1054041	+	377	83643921	-	HCH_01049	-	glycosyltransferase
1009	 47.78	0	1054152..1055279	+	375	83643922	-	HCH_01050	-	glycosyltransferase
1010	 46.98	-1	1055297..1056586	+	429	83643923	-	HCH_01051	-	O-antigen polymerase
1011	 43.62	-1	1056579..1057385	+	268	83643924	-	HCH_01052	-	cell wall biosynthesis glycosyltransferase
1012	 46.78	-1	1057422..1058291	+	289	83643925	-	HCH_01053	-	Zn-dependent alcohol dehydrogenase, class III
1013	 50.63	0	1058304..1059419	+	371	83643926	-	HCH_01055	-	glycosyltransferase
1014	 50.68	0	1059395..1060489	-	364	83643927	rfaQ	HCH_01054	-	lipopolysaccharide heptosyltransferase III, putative
1015	 49.38	0	1060486..1061613	-	375	83643928	-	HCH_01056	-	glycosyltransferase
1016	 53.27	0	1061629..1062561	-	310	83643929	-	HCH_01058	-	lauroyl/myristoyl acyltransferase
1017	 55.86	0	1062740..1064173	+	477	83643930	rfaE	HCH_01059	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
1018	 54.36	0	1064251..1064778	-	175	83643931	-	HCH_01060	-	inorganic pyrophosphatase
1019	 54.91	0	1064865..1065995	-	376	83643932	-	HCH_01061	-	Acyl-CoA dehydrogenase
1020	 52.80	0	1066219..1066896	-	225	83643933	rpiA	HCH_01062	-	ribose-5-phosphate isomerase A
1021	 52.17	0	1067018..1068535	+	505	83643934	ilvA	HCH_01063	-	threonine dehydratase
1022	 52.88	0	1068885..1069457	-	190	83643935	-	HCH_01064	-	5-formyltetrahydrofolate cyclo-ligase
1023	 52.43	0	1069782..1070069	-	95	83643936	-	HCH_01065	-	hypothetical protein
1024	 47.34	-1	1070069..1070275	-	68	83643937	-	HCH_01066	-	hypothetical protein
1025	 47.62	-1	1070335..1070481	-	48	83643938	-	HCH_01067	-	hypothetical protein
1026	 46.99	-1	1070577..1070759	+	60	83643939	-	HCH_01068	-	hypothetical protein
1027	 57.45	0	1070723..1071286	+	187	83643940	-	HCH_01069	-	hypothetical protein
1028	 52.60	0	1071323..1072687	+	454	83643941	-	HCH_01070	-	Xaa-Pro aminopeptidase
1029	 58.96	0	1072687..1073919	+	410	83643942	ubiH	HCH_01071	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1030	 57.19	0	1073961..1075163	+	400	83643943	ubiF	HCH_01072	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
1031	 54.52	0	1075231..1075938	-	235	83643944	-	HCH_01073	-	hypothetical protein
1032	 53.59	0	1075961..1076725	-	254	83643945	tatC	HCH_01074	-	Sec-independent protein translocase TatC
1033	 57.66	0	1076727..1077137	-	136	83643946	tatB	HCH_01075	-	twin-arginine translocation protein TatB
1034	 48.97	0	1077162..1077404	-	80	83643947	tatA	HCH_01076	-	Sec-independent protein secretion pathway components
1035	 50.75	0	1077486..1077818	-	110	83643948	hisE	HCH_01078	-	phosphoribosyl-ATP pyrophosphatase
1036	 51.03	0	1077921..1078310	-	129	83643949	hisI1	HCH_01079	-	phosphoribosyl-AMP cyclohydrolase
1037	 55.27	0	1078377..1080017	-	546	83643950	ubiB	HCH_01080	-	2-polyprenylphenol 6-hydroxylase
1038	 59.24	+1	1080014..1080646	-	210	83643951	-	HCH_01081	-	hypothetical protein
1039	 57.33	0	1080648..1081397	-	249	83643952	ubiE	HCH_01082	-	methylase involved in ubiquinone/menaquinone biosynthesis
1040	 52.13	0	1081553..1081834	+	93	83643953	-	HCH_01083	-	hypothetical protein
1041	 53.97	0	1081861..1082616	-	251	83643954	-	HCH_01084	-	hypothetical protein
1042	 56.45	0	1082855..1083784	-	309	83643955	-	HCH_01085	-	hypothetical protein
1043	 57.32	0	1084234..1085688	+	484	83643956	-	HCH_01086	-	non-ribosomal peptide synthetase modules and related protein
1044	 56.42	0	1085804..1087111	+	435	83643957	-	HCH_01087	-	hypothetical protein
1045	 57.70	0	1087351..1087986	+	211	83643958	upp	HCH_01088	-	uracil phosphoribosyltransferase
1046	 54.07	0	1088020..1088511	-	163	161897902	-	HCH_01089	-	xanthine-guanine phosphoribosyltransferase
1047	 58.13	0	1088643..1089860	-	405	83643960	-	HCH_01090	-	hypothetical protein
1048	 58.77	0	1089931..1091235	-	434	83643961	-	HCH_01091	-	guanine deaminase
1049	 60.88	+1	1091276..1091776	-	166	83643962	allA	HCH_01092	-	ureidoglycolate hydrolase
1050	 56.56	0	1091778..1092143	-	121	83643963	-	HCH_01093	-	transthyretin-like protein
1051	 59.22	+1	1092140..1092649	-	169	83643964	-	HCH_01094	-	putative OHCU decarboxylase
1052	 60.40	+1	1092646..1093650	-	334	83643965	alc	HCH_01095	-	allantoicase
1053	 59.50	+1	1093715..1095082	-	455	83643966	allB	HCH_01096	-	dihydroorotase-like protein
1054	 61.79	+1	1095079..1095981	-	300	83643967	xdhC	HCH_01097	-	xanthine and Co dehydrogenase maturation factor
1055	 59.11	+1	1095985..1098405	-	806	83643968	xdhB	HCH_01098	-	xanthine dehydrogenase, molybdopterin-binding subunit B
1056	 58.78	0	1098398..1099867	-	489	83643969	xdhA	HCH_01099	-	xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A
1057	 41.50	-2	1100081..1100227	-	48	83643970	-	HCH_01100	-	hypothetical protein
1058	 59.33	+1	1100363..1101943	+	526	83643971	-	HCH_01101	-	ABC-type uncharacterized transport system, ATPase components
1059	 58.66	0	1101994..1103130	+	378	83643972	-	HCH_01102	-	ABC-type uncharacterized transport system, permease component
1060	 58.68	0	1103143..1104069	+	308	83643973	-	HCH_01103	-	uncharacterized ABC-type transport system, permease component
1061	 57.10	0	1104171..1105268	+	365	83643974	-	HCH_01105	-	uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein
1062	 60.79	+1	1105356..1106717	+	453	83643975	-	HCH_01106	-	hydroxydechloroatrazine ethylaminohydrolase
1063	 52.96	0	1106834..1107475	+	213	83643976	-	HCH_01108	-	transcriptional regulator
1064	 60.49	+1	1107586..1107747	+	53	83643977	-	HCH_01109	-	hypothetical protein
1065	 61.01	+1	1107782..1108117	-	111	83643978	-	HCH_01110	-	Fe-S-cluster oxidoreductase
1066	 57.15	0	1108498..1110042	+	514	83643979	-	HCH_01111	-	hypothetical protein
1067	 60.00	+1	1110181..1111425	+	414	83643980	-	HCH_01112	-	hypothetical protein
1068	 54.15	0	1111448..1112518	-	356	83643981	-	HCH_01113	-	Outer membrane phospholipase A
1069	 58.06	0	1112716..1114086	+	456	83643982	-	HCH_01114	-	trypsin-like serine protease
1070	 43.30	-1	1114371..1114922	+	183	83643983	-	HCH_01115	-	hypothetical protein
1071	 55.44	0	1115135..1116871	+	578	83643984	argS	HCH_01116	-	arginyl-tRNA synthetase
1072	 52.14	0	1116920..1117387	-	155	83643985	-	HCH_01117	-	transcriptional regulator
1073	 56.54	0	1117467..1118888	+	473	83643986	-	HCH_01118	-	major facilitator superfamily permease
1074	 55.68	0	1118947..1119474	+	175	83643987	-	HCH_01119	-	hypothetical protein
1075	 55.37	0	1119764..1120498	+	244	83643988	-	HCH_01120	-	SAM-dependent methyltransferase
1076	 52.86	0	1120814..1121443	+	209	83643989	-	HCH_01121	-	histidyl-tRNA synthetase-related protein
1077	 55.89	0	1121959..1122942	-	327	83643990	-	HCH_01122	-	Outer membrane protein and related peptidoglycan-associated (lipo)protein
1078	 61.10	+1	1123094..1124224	+	376	83643991	-	HCH_01123	-	NADH dehydrogenase, FAD-containing subunit
1079	 57.74	0	1124230..1125024	-	264	83643992	-	HCH_01124	-	amino acid ABC transporter periplasmic protein
1080	 55.09	0	1125192..1125623	-	143	83643993	-	HCH_01125	-	hypothetical protein
1081	 55.10	0	1126007..1127917	+	636	83643994	-	HCH_01126	-	hypothetical protein
1082	 56.45	0	1128108..1129829	+	573	83643995	-	HCH_01127	-	ABC-type oligopeptide transport system, periplasmic component
1083	 55.48	0	1129887..1130807	+	306	83643996	-	HCH_01128	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
1084	 57.03	0	1130850..1131773	+	307	83643997	-	HCH_01129	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease components
1085	 58.45	0	1131784..1132818	+	344	83643998	-	HCH_01130	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
1086	 60.52	+1	1132874..1133866	+	330	83643999	-	HCH_01131	-	ABC-type oligopeptide transport system, ATPase component
1087	 58.77	0	1133911..1135050	+	379	83644000	-	HCH_01132	-	AraC-type DNA-binding domain-containing protein
1088	 44.73	-1	1135062..1136816	-	584	83644001	-	HCH_01133	-	hypothetical protein
1089	 58.27	0	1137070..1139070	+	666	83644002	-	HCH_01134	-	methyl-accepting chemotaxis protein
1090	 58.96	0	1139634..1141112	+	492	83644003	-	HCH_01135	-	chitin-binding domain-containing protein
1091	 59.44	+1	1141142..1144282	+	1046	83644004	-	HCH_01137	-	chitinase
1092	 46.73	-1	1144542..1144847	+	101	83644005	-	HCH_01138	-	transcriptional regulator
53.37	MEAN

5.65	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.