IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
905	 63.65	0	960335..961195	+	286	37520474	-	glr0905	-	hypothetical protein
906	 68.72	+1	961229..962884	+	551	37520475	-	glr0906	-	WD repeat-containing protein
907	 65.22	0	963132..963755	-	207	37520476	-	gll0907	-	hypothetical protein
908	 65.02	0	963758..964366	-	202	37520477	-	gll0908	-	ThiJ/PfpI family protein
909	 62.19	0	964403..964960	-	185	37520478	-	gll0909	-	hypothetical protein
910	 64.25	0	965049..966248	-	399	37520479	-	gll0910	-	hypothetical protein
911	 68.85	+1	966395..967126	-	243	37520480	-	gll0911	-	hypothetical protein
912	 63.08	0	967225..968535	+	436	37520481	-	glr0912	-	sugar transporter
913	 63.69	0	968556..969227	-	223	37520482	-	gll0913	-	hypothetical protein
914	 68.14	+1	969401..969739	-	112	37520483	-	gll0914	-	hypothetical protein
915	 64.39	0	969963..971414	+	483	37520484	-	glr0915	-	serine/threonine kinase
916	 59.86	0	971507..971800	-	97	37520485	-	gsl0916	-	hypothetical protein
917	 67.19	+1	971801..973126	-	441	37520486	-	gll0917	-	hypothetical protein
918	 63.50	0	973107..973517	-	136	37520487	-	gll0918	-	hypothetical protein
919	 66.89	+1	973628..975913	-	761	37520488	-	gll0919	-	hypothetical protein
920	 65.24	0	975910..977808	-	632	37520489	-	gll0920	-	hypothetical protein
921	 63.69	0	977830..979407	-	525	37520490	-	gll0921	-	general secretion pathway protein E
922	 64.14	0	979580..982117	+	845	37520491	-	glr0922	-	nitrogen assimilation regulatory protein
923	 67.22	+1	982375..983094	+	239	37520492	-	glr0923	-	hypothetical protein
924	 62.50	0	983375..983590	-	71	37520493	-	gsl0924	-	hypothetical protein
925	 65.77	0	983616..984173	-	185	37520494	-	gll0925	-	hypothetical protein
926	 66.95	+1	984204..984554	-	116	37520495	-	gll0926	-	pterin-4-alpha-carbinolamine dehydratase
927	 63.01	0	984639..984884	+	81	37520496	-	gsr0927	-	hypothetical protein
928	 55.33	-1	984875..985174	-	99	37520497	psb28	gvip123	-	photosystem II reaction center 13 kDa protein
929	 65.51	0	985240..985584	-	114	37520498	-	gll0929	-	protein kinase C inhibitor
930	 65.85	0	985658..986641	+	327	37520499	-	glr0930	-	hypothetical protein
931	 60.74	0	986638..987801	+	387	37520500	ycf84	gvip124	-	hypothetical protein
932	 64.05	0	987873..989249	+	458	37520501	glgA	gvip125	-	glycogen synthase
933	 63.59	0	989250..990290	-	346	37520502	-	gll0933	-	potassium channel protein
934	 68.01	+1	990287..991480	-	397	37520503	-	gll0934	-	N-acetyl-glucosamine-6-phosphate deacetylase
935	 61.48	0	991443..991847	+	134	37520504	-	glr0935	-	iron-sulfur cluster binding protein
936	 55.61	-1	991876..992526	+	216	37520505	-	glr0936	-	hypothetical protein
937	 59.26	0	992600..993409	-	269	37520506	-	gll0937	-	hypothetical protein
938	 65.56	0	993587..996034	-	815	37520507	-	gll0938	-	proteinase
939	 68.56	+1	996502..996870	+	122	37520508	-	glr0939	-	hypothetical protein
940	 64.64	0	996963..998045	+	360	37520509	-	glr0940	-	sorbitol dehydrogenase
941	 67.39	+1	998032..998994	-	320	37520510	-	gll0941	-	hypothetical protein
942	 49.25	-2	999418..999618	+	66	37520511	-	gsr0942	-	hypothetical protein
943	 66.67	0	999853..1001253	+	466	37520512	hemG	gvip126	-	protoporphyrinogen oxidase
944	 66.29	0	1001273..1001809	+	178	37520513	-	glr0944	-	hypothetical protein
945	 62.88	0	1001858..1002490	+	210	37520514	-	glr0945	-	carbonate dehydratase
946	 62.43	0	1002451..1003560	-	369	37520515	-	gll0946	-	hypothetical protein
947	 57.66	0	1003564..1005051	-	495	37520516	-	gll0947	-	alginate O-acetylation protein
948	 65.58	0	1005232..1006890	-	552	37520517	-	gll0948	-	ABC transporter permease
949	 51.75	-2	1007073..1007300	-	75	37520518	-	gsl0949	-	hypothetical protein
950	 57.12	-1	1007663..1008322	+	219	37520519	cpcC	gvip127	-	phycocyanin-associated rod linker protein
951	 62.84	0	1008374..1008922	+	182	37520520	-	glr0951	-	hypothetical protein
952	 62.45	0	1008970..1009515	+	181	37520521	-	glr0952	-	hypothetical protein
953	 65.21	0	1009533..1010696	-	387	37520522	-	gll0953	-	hypothetical protein
954	 62.76	0	1010755..1011855	+	366	37520523	-	glr0954	-	esterase
955	 63.72	0	1012150..1012827	+	225	37520524	-	glr0955	-	hypothetical protein
956	 67.76	+1	1012960..1014153	-	397	37520525	-	gll0956	-	hypothetical protein
957	 63.97	0	1014180..1015253	-	357	37520526	-	gll0957	-	dioxygenase
958	 65.78	0	1015311..1018919	-	1202	37520527	-	gll0958	-	urea amidolyase
959	 62.88	0	1018947..1019606	-	219	37520528	-	gll0959	-	hypothetical protein
960	 64.57	0	1019619..1020335	-	238	37520529	-	gll0960	-	hypothetical protein
961	 68.58	+1	1020621..1022447	+	608	37520530	-	glr0961	-	amidase
962	 62.15	0	1022424..1022711	-	95	37520531	-	gsl0962	-	hypothetical protein
963	 63.94	0	1022981..1024702	-	573	37520532	-	gll0963	-	hypothetical protein
964	 58.43	0	1024824..1025078	-	84	37520533	-	gsl0964	-	hypothetical protein
965	 66.78	0	1025320..1027053	+	577	37520534	-	glr0965	-	N-acetylmuramoyl-L-alanine amidase
966	 51.22	-2	1027487..1028101	+	204	37520535	-	glr0966	-	outer membrane lipoprotein
967	 61.45	0	1028303..1028551	-	82	37520536	-	gsl0967	-	hypothetical protein
968	 74.27	+2	1028750..1029196	+	148	37520537	-	glr0968	-	hypothetical protein
969	 63.68	0	1029221..1030591	-	456	37520538	-	gll0969	-	UDP-glucose dehydrogenase
970	 67.15	+1	1030730..1031773	+	347	37520539	pdxA	glr0970	-	4-hydroxythreonine-4-phosphate dehydrogenase
971	 67.43	+1	1031843..1033150	+	435	37520540	-	glr0971	-	hypothetical protein
972	 63.66	0	1033173..1033538	+	121	37520541	-	glr0972	-	hypothetical protein
973	 65.98	0	1033590..1034321	+	243	37520542	-	glr0973	-	peptidyl-prolyl cis-trans isomerase
974	 67.12	+1	1034318..1035205	-	295	37520543	-	gll0974	-	hypothetical protein
975	 66.67	0	1035273..1036919	+	548	37520544	-	glr0975	-	hypothetical protein
976	 57.32	-1	1036961..1037527	+	188	37520545	-	glr0976	-	hypothetical protein
977	 43.10	-2	1037994..1038341	+	115	37520546	-	glr0977	-	hypothetical protein
978	 51.18	-2	1038338..1038718	+	126	37520547	-	glr0978	-	hypothetical protein
979	 63.76	0	1039007..1040212	+	401	37520548	-	glr0979	-	hypothetical protein
980	 63.81	0	1040299..1042713	-	804	37520549	-	gll0980	-	glucosyl transferase
981	 62.39	0	1043166..1043867	-	233	37520550	nblB	gvip128	-	phycocyanin alpha phycocyanobilin lyase related protein NblB-like protein
982	 61.63	0	1043986..1047360	+	1124	37520551	-	glr0982	-	hypothetical protein
983	 66.41	0	1047373..1048527	+	384	37520552	-	glr0983	-	hypothetical protein
984	 62.90	0	1048615..1050285	+	556	37520553	-	glr0984	-	hypothetical protein
985	 50.17	-2	1050477..1050767	+	96	37520554	-	gsr0985	-	putative transposase
986	 62.61	0	1051203..1051892	+	229	37520555	-	glr0986	-	hypothetical protein
987	 62.93	0	1052027..1052989	+	320	37520556	rps1	gvip129	-	30S ribosomal protein S1
988	 64.11	0	1053093..1054811	+	572	37520557	ribA	gvip130	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
989	 59.40	0	1054900..1055133	-	77	37520558	-	gsl0989	-	hypothetical protein
990	 62.73	0	1055412..1056122	+	236	37520559	-	glr0990	-	protein phosphatase-like protein
991	 63.92	0	1056285..1057121	-	278	37520560	-	gll0991	-	hypothetical protein
992	 60.12	0	1057258..1057899	-	213	37520561	-	gll0992	-	hypothetical protein
993	 62.15	0	1058173..1058748	-	191	37520562	xer	gvip131	-	integrase/recombinase
994	 57.40	0	1059020..1062031	-	1003	37520563	-	gll0994	-	hypothetical protein
995	 59.09	0	1062061..1065042	-	993	37520564	-	gll0995	-	hypothetical protein
996	 66.18	0	1065139..1065552	-	137	37520565	-	gll0996	-	hypothetical protein
997	 60.62	0	1065716..1068097	+	793	37520566	-	glr0997	-	putative phosphoketolase
998	 58.93	0	1068192..1070762	+	856	37520567	-	glr0998	-	glycogen phosphorylase
999	 64.63	0	1070774..1071412	+	212	37520568	-	glr0999	-	hypothetical protein
1000	 64.53	0	1071423..1072640	+	405	37520569	-	glr1000	-	acetate kinase
1001	 61.90	0	1072648..1073592	-	314	37520570	-	gll1001	-	LysR family transcriptional regulator
1002	 64.72	0	1073721..1074029	-	102	37520571	-	gll1002	-	hypothetical protein
1003	 63.57	0	1074281..1076089	+	602	37520572	ndhF	gvip132	-	NAD(P)H-quinone oxidoreductase subunit F
1004	 63.70	0	1076127..1077641	+	504	37520573	ndhD	gvip133	-	NAD(P)H-quinone oxidoreductase subunit M
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.