IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
855	 63.68	0	904652..905623	+	323	37520424	ycf48	gvip108	-	Ycf48-like protein
856	 53.73	-1	905698..905952	+	84	37520425	psbE	gvip109	-	cytochrome b559 subunit alpha
857	 66.03	0	905972..906127	+	51	37520426	psbF	gvip110	-	cytochrome b559 subunit beta
858	 50.88	-2	906143..906256	+	37	37520427	psbL	gvip111	-	photosystem II protein L
859	 61.26	0	906270..906380	+	36	37520428	psbJ	gvip112	-	photosystem II reaction center protein J
860	 68.06	+1	906514..907230	+	238	37520429	-	glr0860	-	two-component response regulator
861	 70.27	+1	907227..908669	+	480	37520430	-	glr0861	-	two-component sensor histidine kinase
862	 69.80	+1	908682..910151	-	489	37520431	-	gll0862	-	hypothetical protein
863	 66.67	0	910168..910497	-	109	37520432	-	gll0863	-	hypothetical protein
864	 67.85	+1	910623..911807	-	394	37520433	-	gll0864	-	hypothetical protein
865	 61.47	0	911965..912426	-	153	37520434	-	gll0865	-	hypothetical protein
866	 61.52	0	912700..913827	-	375	37520435	-	gll0866	-	A/G-specific adenine glycosylase
867	 62.03	0	914022..915704	+	560	37520436	pds	gvip113	-	phytoene dehydrogenase
868	 63.84	0	915769..916263	+	164	37520437	-	glr0868	-	hypothetical protein
869	 63.61	0	916264..916656	+	130	37520438	mutT	gvip114	-	mutator protein
870	 66.72	0	916653..918662	+	669	37520439	chlD	gvip115	-	Mg chelatase subunit
871	 55.61	-1	919068..919655	+	195	37520440	-	glr0871	-	hypothetical protein
872	 50.57	-2	919913..920968	+	351	37520441	-	glr0872	-	putative transposase
873	 59.95	0	922109..922495	-	128	37520442	-	gll0873	-	hypothetical protein
874	 67.41	+1	922604..923272	+	222	37520443	-	glr0874	-	hypothetical protein
875	 66.50	0	923319..924500	-	393	37520444	-	gll0875	-	HlyD family multidrug efflux protein
876	 63.20	0	924507..927737	-	1076	37520445	-	gll0876	-	AcrB/AcrD/AcrF family multidrug efflux protein
877	 63.54	0	927961..928248	+	95	37520446	-	gsr0877	-	transcription regulator ArsR
878	 60.88	0	928383..929558	-	391	37520447	-	gll0878	-	hypothetical protein
879	 63.79	0	929709..931235	-	508	37520448	-	gll0879	-	oxaloacetate decarboxylase
880	 56.76	-1	931248..931580	-	110	37520449	-	gll0880	-	thioredoxin
881	 64.89	0	931910..933880	-	656	37520450	gidA	gvip116	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
882	 63.94	0	934036..934365	+	109	37520451	ycf54	gvip117	-	hypothetical protein
883	 61.66	0	935009..935587	+	192	37520452	trpG	gvip118	-	anthranilate synthase component II
884	 64.51	0	935584..936417	+	277	37520453	-	glr0884	-	hypothetical protein
885	 63.77	0	936511..938238	+	575	37520454	-	glr0885	-	hypothetical protein
886	 61.85	0	938257..939066	-	269	37520455	-	gll0886	-	hypothetical protein
887	 62.88	0	939050..940000	-	316	37520456	-	gll0887	-	hypothetical protein
888	 64.53	0	940053..940943	-	296	37520457	nadC	gvip119	-	nicotinate-nucleotide pyrophosphorylase
889	 64.33	0	940972..941655	+	227	37520458	trmD	glr0889	-	tRNA (guanine-N(1)-)-methyltransferase
890	 62.37	0	941659..943149	+	496	37520459	-	glr0890	-	ABC transporter permease
891	 60.39	0	943306..943560	-	84	37520460	-	gsl0891	-	hypothetical protein
892	 56.22	-1	943751..945214	+	487	37520461	-	glr0892	-	hypothetical protein
893	 64.52	0	945221..947359	-	712	37520462	-	gll0893	-	hypothetical protein
894	 52.14	-2	947969..948505	+	178	37520463	-	glr0894	-	putative transposase
895	 61.23	0	948990..950570	+	526	37520464	-	glr0895	-	hypothetical protein
896	 62.22	0	950578..952872	-	764	37520465	-	gll0896	-	hypothetical protein
897	 64.49	0	953119..954729	-	536	37520466	-	gll0897	-	hypothetical protein
898	 60.64	0	954759..955472	+	237	37520467	pspA	gvip120	-	hypothetical protein
899	 58.39	0	955562..956467	-	301	37520468	-	gll0899	-	metalloprotease MEP1-like protein
900	 66.39	0	956598..957311	-	237	37520469	-	gll0900	-	hypothetical protein
901	 62.66	0	957315..958313	-	332	37520470	-	gll0901	-	ribose-phosphate pyrophosphokinase
902	 53.03	-1	958477..958872	+	131	37520471	-	glr0902	-	hypothetical protein
903	 65.01	0	959007..959849	+	280	37520472	rplB	gvip121	-	50S ribosomal protein L2
904	 58.42	0	959858..960136	+	92	37520473	rps19	gvip122	-	30S ribosomal protein S19
905	 63.65	0	960335..961195	+	286	37520474	-	glr0905	-	hypothetical protein
906	 68.72	+1	961229..962884	+	551	37520475	-	glr0906	-	WD repeat-containing protein
907	 65.22	0	963132..963755	-	207	37520476	-	gll0907	-	hypothetical protein
908	 65.02	0	963758..964366	-	202	37520477	-	gll0908	-	ThiJ/PfpI family protein
909	 62.19	0	964403..964960	-	185	37520478	-	gll0909	-	hypothetical protein
910	 64.25	0	965049..966248	-	399	37520479	-	gll0910	-	hypothetical protein
911	 68.85	+1	966395..967126	-	243	37520480	-	gll0911	-	hypothetical protein
912	 63.08	0	967225..968535	+	436	37520481	-	glr0912	-	sugar transporter
913	 63.69	0	968556..969227	-	223	37520482	-	gll0913	-	hypothetical protein
914	 68.14	+1	969401..969739	-	112	37520483	-	gll0914	-	hypothetical protein
915	 64.39	0	969963..971414	+	483	37520484	-	glr0915	-	serine/threonine kinase
916	 59.86	0	971507..971800	-	97	37520485	-	gsl0916	-	hypothetical protein
917	 67.19	+1	971801..973126	-	441	37520486	-	gll0917	-	hypothetical protein
918	 63.50	0	973107..973517	-	136	37520487	-	gll0918	-	hypothetical protein
919	 66.89	+1	973628..975913	-	761	37520488	-	gll0919	-	hypothetical protein
920	 65.24	0	975910..977808	-	632	37520489	-	gll0920	-	hypothetical protein
921	 63.69	0	977830..979407	-	525	37520490	-	gll0921	-	general secretion pathway protein E
922	 64.14	0	979580..982117	+	845	37520491	-	glr0922	-	nitrogen assimilation regulatory protein
923	 67.22	+1	982375..983094	+	239	37520492	-	glr0923	-	hypothetical protein
924	 62.50	0	983375..983590	-	71	37520493	-	gsl0924	-	hypothetical protein
925	 65.77	0	983616..984173	-	185	37520494	-	gll0925	-	hypothetical protein
926	 66.95	+1	984204..984554	-	116	37520495	-	gll0926	-	pterin-4-alpha-carbinolamine dehydratase
927	 63.01	0	984639..984884	+	81	37520496	-	gsr0927	-	hypothetical protein
928	 55.33	-1	984875..985174	-	99	37520497	psb28	gvip123	-	photosystem II reaction center 13 kDa protein
929	 65.51	0	985240..985584	-	114	37520498	-	gll0929	-	protein kinase C inhibitor
930	 65.85	0	985658..986641	+	327	37520499	-	glr0930	-	hypothetical protein
931	 60.74	0	986638..987801	+	387	37520500	ycf84	gvip124	-	hypothetical protein
932	 64.05	0	987873..989249	+	458	37520501	glgA	gvip125	-	glycogen synthase
933	 63.59	0	989250..990290	-	346	37520502	-	gll0933	-	potassium channel protein
934	 68.01	+1	990287..991480	-	397	37520503	-	gll0934	-	N-acetyl-glucosamine-6-phosphate deacetylase
935	 61.48	0	991443..991847	+	134	37520504	-	glr0935	-	iron-sulfur cluster binding protein
936	 55.61	-1	991876..992526	+	216	37520505	-	glr0936	-	hypothetical protein
937	 59.26	0	992600..993409	-	269	37520506	-	gll0937	-	hypothetical protein
938	 65.56	0	993587..996034	-	815	37520507	-	gll0938	-	proteinase
939	 68.56	+1	996502..996870	+	122	37520508	-	glr0939	-	hypothetical protein
940	 64.64	0	996963..998045	+	360	37520509	-	glr0940	-	sorbitol dehydrogenase
941	 67.39	+1	998032..998994	-	320	37520510	-	gll0941	-	hypothetical protein
942	 49.25	-2	999418..999618	+	66	37520511	-	gsr0942	-	hypothetical protein
943	 66.67	0	999853..1001253	+	466	37520512	hemG	gvip126	-	protoporphyrinogen oxidase
944	 66.29	0	1001273..1001809	+	178	37520513	-	glr0944	-	hypothetical protein
945	 62.88	0	1001858..1002490	+	210	37520514	-	glr0945	-	carbonate dehydratase
946	 62.43	0	1002451..1003560	-	369	37520515	-	gll0946	-	hypothetical protein
947	 57.66	0	1003564..1005051	-	495	37520516	-	gll0947	-	alginate O-acetylation protein
948	 65.58	0	1005232..1006890	-	552	37520517	-	gll0948	-	ABC transporter permease
949	 51.75	-2	1007073..1007300	-	75	37520518	-	gsl0949	-	hypothetical protein
950	 57.12	-1	1007663..1008322	+	219	37520519	cpcC	gvip127	-	phycocyanin-associated rod linker protein
951	 62.84	0	1008374..1008922	+	182	37520520	-	glr0951	-	hypothetical protein
952	 62.45	0	1008970..1009515	+	181	37520521	-	glr0952	-	hypothetical protein
953	 65.21	0	1009533..1010696	-	387	37520522	-	gll0953	-	hypothetical protein
954	 62.76	0	1010755..1011855	+	366	37520523	-	glr0954	-	esterase
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.