IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
542	 65.40	0	577638..578903	-	421	37520111	-	gll0542	-	hypothetical protein
543	 55.56	-1	579079..579474	+	131	37520112	-	glr0543	-	hypothetical protein
544	 62.36	0	579478..580011	-	177	37520113	-	gll0544	-	hypothetical protein
545	 65.88	0	580018..580650	-	210	37520114	-	gll0545	-	hypothetical protein
546	 65.07	0	580691..581695	-	334	37520115	-	gll0546	-	hypothetical protein
547	 65.27	0	581851..583065	+	404	37520116	argD	gvip059	-	acetylornithine aminotransferase
548	 64.36	0	583105..583929	+	274	37520117	-	glr0548	-	hypothetical protein
549	 60.74	0	583931..584773	+	280	37520118	-	glr0549	-	hypothetical protein
550	 59.67	0	584861..585289	-	142	37520119	-	gll0550	-	hypothetical protein
551	 64.15	0	585337..586410	-	357	37520120	trmU	gll0551	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
552	 67.49	+1	586506..587234	-	242	37520121	-	gll0552	-	hypothetical protein
553	 62.24	0	587362..587745	-	127	37520122	-	gll0553	-	hypothetical protein
554	 68.80	+1	587811..588608	-	265	37520123	-	gll0554	-	tRNA/rRNA methyltransferase
555	 63.02	0	588705..589307	+	200	37520124	-	glr0555	-	hypothetical protein
556	 62.85	0	589327..592812	-	1161	37520125	-	gll0556	-	hypothetical protein
557	 69.00	+1	593186..594214	-	342	37520126	-	gll0557	-	hypothetical protein
558	 68.42	+1	594211..594381	-	56	37520127	-	gsl0558	-	hypothetical protein
559	 65.13	0	594478..595977	+	499	37520128	purH	gvip060	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
560	 62.11	0	595981..596835	-	284	37520129	-	gll0560	-	hypothetical protein
561	 66.10	0	596866..598965	-	699	37520130	-	gll0561	-	hypothetical protein
562	 52.82	-1	599118..599312	+	64	37520131	-	gsr0562	-	hypothetical protein
563	 58.22	0	599309..599521	+	70	37520132	-	gsr0563	-	hypothetical protein
564	 66.01	0	599518..601041	-	507	37520133	-	gll0564	-	mercuric reductase
565	 64.78	0	601086..602357	-	423	37520134	-	gll0565	-	chromate transport protein
566	 63.72	0	602368..602706	-	112	37520135	-	gll0566	-	hypothetical protein
567	 63.91	0	602712..605072	-	786	37520136	-	gll0567	-	hypothetical protein
568	 64.32	0	605368..606177	+	269	37520137	-	glr0568	-	hypothetical protein
569	 62.81	0	606225..606509	-	94	37520138	-	gsl0569	-	hypothetical protein
570	 66.36	0	606611..608875	-	754	37520139	kdpD	gvip061	-	potassium-transporting P-type ATPase D chain
571	 68.96	+1	608894..609547	-	217	37520140	-	gll0571	-	two-component response regulator
572	 64.60	0	609544..610656	-	370	37520141	-	gll0572	-	two-component sensor histidine kinase
573	 62.15	0	611072..612799	+	575	37520142	kdpA	gvip062	-	potassium-transporting ATPase subunit A
574	 65.52	0	612812..614896	+	694	37520143	kdpB	gvip063	-	potassium-transporting ATPase subunit B
575	 63.84	0	614911..615477	+	188	37520144	kdpC	gvip064	-	potassium-transporting P-type ATPase C chain
576	 60.55	0	615474..615800	+	108	37520145	-	glr0576	-	hypothetical protein
577	 59.04	0	615839..616402	+	187	37520146	-	glr0577	-	hypothetical protein
578	 66.67	0	616361..617188	-	275	37520147	-	gll0578	-	hemin ABC transporter ATP binding protein
579	 70.32	+1	617188..618255	-	355	37520148	-	gll0579	-	hemin ABC transporter permease protein
580	 67.34	+1	618252..619142	-	296	37520149	-	gll0580	-	hemin-binding periplasmic protein
581	 62.58	0	619406..621412	+	668	37520150	-	glr0581	-	acylamino-acid-releasing enzyme
582	 60.99	0	621509..622072	+	187	37520151	-	glr0582	-	hypothetical protein
583	 65.03	0	622111..624618	-	835	37520152	-	gll0583	-	hypothetical protein
584	 59.02	0	624711..624893	+	60	37520153	-	gsr0584	-	hypothetical protein
585	 64.32	0	624914..627901	-	995	37520154	-	gll0585	-	serine/threonine kinase
586	 57.16	-1	628759..629673	-	304	37520155	-	gll0586	-	putative transposase
587	 62.71	0	629783..630565	-	260	37520156	-	gll0587	-	hypothetical protein
588	 64.04	0	630716..631171	+	151	37520157	-	glr0588	-	hypothetical protein
589	 66.67	0	631119..631778	-	219	37520158	-	gll0589	-	serine/threonine protein phosphatase
590	 65.74	0	631827..632042	-	71	37520159	-	gsl0590	-	hypothetical protein
591	 64.62	0	632242..634101	+	619	37520160	-	glr0591	-	hypothetical protein
592	 67.09	+1	634263..635678	+	471	37520161	-	glr0592	-	hypothetical protein
593	 50.69	-2	636056..636775	+	239	37520162	-	glr0593	-	hypothetical protein
594	 59.26	0	636840..637190	-	116	37520163	-	gll0594	-	hypothetical protein
595	 65.45	0	637333..638400	-	355	37520164	-	gll0595	-	beta-lactamase
596	 63.94	0	638780..640393	-	537	37520165	-	gll0596	-	hypothetical protein
597	 61.82	0	640326..642245	+	639	37520166	-	glr0597	-	ABC transporter ATP binding protein
598	 67.28	+1	642318..642806	+	162	37520167	-	glr0598	-	transport ATPase
599	 57.20	-1	642836..643585	-	249	37520168	-	gll0599	-	hypothetical protein
600	 62.50	0	643887..644270	+	127	37520169	-	glr0600	-	hypothetical protein
601	 59.00	0	644321..645037	-	238	37520170	-	gll0601	-	oxidase
602	 58.91	0	645227..645871	+	214	37520171	-	glr0602	-	hypothetical protein
603	 61.90	0	645942..646109	+	55	37520172	-	gsr0603	-	hypothetical protein
604	 41.98	-2	646435..647244	-	269	37520173	-	gll0604	-	hypothetical protein
605	 40.15	-2	648171..648698	+	175	37520174	-	glr0605	-	hypothetical protein
606	 62.59	0	649344..650912	-	522	37520175	-	gll0606	-	putative transposase
607	 63.83	0	651121..652425	-	434	37520176	-	gll0607	-	hypothetical protein
608	 56.06	-1	652422..652751	-	109	37520177	-	gll0608	-	hypothetical protein
609	 58.43	0	653125..653622	+	165	37520178	-	glr0609	-	hypothetical protein
610	 59.43	0	653917..654552	+	211	37520179	-	glr0610	-	hypothetical protein
611	 66.03	0	654755..654910	+	51	37520180	-	gsr0611	-	hypothetical protein
612	 65.70	0	654951..655157	+	68	37520181	-	gsr0612	-	hypothetical protein
613	 52.80	-1	655144..655785	-	213	37520182	-	gll0613	-	hypothetical protein
614	 62.78	0	655817..657976	-	719	37520183	-	gll0614	-	ATP-dependent helicase
615	 53.97	-1	657994..658245	+	83	37520184	-	gsr0615	-	hypothetical protein
616	 56.17	-1	658238..658723	+	161	37520185	-	glr0616	-	hypothetical protein
617	 64.07	0	658740..661433	-	897	37520186	-	gll0617	-	hypothetical protein
618	 65.15	0	661430..661693	-	87	37520187	-	gsl0618	-	hypothetical protein
619	 63.91	0	661704..662066	-	120	37520188	-	gll0619	-	hypothetical protein
620	 65.96	0	662302..663576	-	424	37520189	-	gll0620	-	hypothetical protein
621	 61.62	0	663620..664015	-	131	37520190	-	gll0621	-	hypothetical protein
622	 64.67	0	664020..665318	-	432	37520191	-	gll0622	-	hypothetical protein
623	 60.61	0	665560..665889	+	109	37520192	-	glr0623	-	hypothetical protein
624	 58.33	0	665994..666581	+	195	37520193	-	glr0624	-	hypothetical protein
625	 60.21	0	666613..668673	-	686	37520194	-	gll0625	-	prolyl endopeptidase
626	 63.65	0	669214..669975	+	253	37520195	-	glr0626	-	carboxyl-terminal processing protease
627	 57.47	0	669982..670764	-	260	37520196	-	gll0627	-	hypothetical protein
628	 61.19	0	670885..671304	+	139	37520197	-	glr0628	-	hypothetical protein
629	 65.28	0	671339..673576	+	745	37520198	-	glr0629	-	exodeoxyribonuclease V alpha chain
630	 63.10	0	673629..673880	+	83	37520199	-	gsr0630	-	hypothetical protein
631	 61.95	0	673898..674215	+	105	37520200	-	glr0631	-	hypothetical protein
632	 61.63	0	674236..674652	-	138	37520201	-	gll0632	-	hypothetical protein
633	 58.85	0	674649..674891	-	80	37520202	-	gsl0633	-	hypothetical protein
634	 65.08	0	674979..676997	-	672	37520203	-	gll0634	-	two-component hybrid sensor and regulator
635	 63.88	0	677001..681164	-	1387	37520204	-	gll0635	-	two-component hybrid sensor and regulator
636	 64.00	0	681375..684191	-	938	37520205	polA	gvip065	-	DNA polymerase I
637	 63.42	0	684263..685033	-	256	37520206	-	gll0637	-	hypothetical protein
638	 62.12	0	685261..687021	+	586	37520207	-	glr0638	-	porin; major outer membrane protein
639	 65.44	0	687127..687453	+	108	37520208	-	glr0639	-	hypothetical protein
640	 63.07	0	687464..689968	-	834	37520209	-	gll0640	-	glucosamine-6-sulfatase
641	 65.91	0	690026..691483	-	485	37520210	-	gll0641	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.