IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
429	 65.22	0	459331..459606	-	91	37519998	-	gsl0429	-	hypothetical protein
430	 70.60	+1	459704..460339	-	211	37519999	-	gll0430	-	hypothetical protein
431	 63.94	0	460351..462441	-	696	37520000	-	gll0431	-	serine/threonine kinase
432	 66.49	0	462585..463721	+	378	37520001	-	glr0432	-	hypothetical protein
433	 68.21	+1	463718..464170	-	150	37520002	ycf41	gvip045	-	hypothetical protein
434	 58.76	0	464176..464466	-	96	37520003	rpsF	gvip046	-	30S ribosomal protein S6
435	 63.22	0	464612..466120	+	502	37520004	-	glr0435	-	long-chain-fatty-acid-CoA ligase
436	 57.01	-1	466174..467043	+	289	37520005	-	glr0436	-	ABC transporter ATP-binding protein
437	 58.05	0	467040..468629	+	529	37520006	-	glr0437	-	hypothetical protein
438	 61.45	0	468631..469320	+	229	37520007	-	glr0438	-	hypothetical protein
439	 67.18	+1	469357..469743	+	128	37520008	-	glr0439	-	hypothetical protein
440	 62.96	0	469757..470134	+	125	37520009	-	glr0440	-	hypothetical protein
441	 70.54	+1	470137..470523	+	128	37520010	-	glr0441	-	hypothetical protein
442	 60.67	0	470524..470790	-	88	37520011	-	gsl0442	-	phosphoribosylformylglycinamidine synthase subunit PurS
443	 66.45	0	470886..472256	+	456	37520012	-	glr0443	-	UDP-N-acetylglucosamine pyrophosphorylase
444	 64.90	0	472253..473044	-	263	37520013	surE	gll0444	-	stationary phase survival protein SurE
445	 60.92	0	473307..474350	+	347	37520014	-	glr0445	-	phosphate ABC transporter periplasmic phosphate-binding protein
446	 61.96	0	474386..475363	+	325	37520015	-	glr0446	-	phosphate ABC transporter permease protein
447	 61.26	0	475370..476257	+	295	37520016	-	glr0447	-	phosphate ABC transporter permease protein
448	 57.99	0	476275..477081	+	268	37520017	-	glr0448	-	phosphate ABC transporter ATP binding protein
449	 66.55	0	477154..478002	-	282	37520018	xer	gvip047	-	integrase/recombinase
450	 59.79	0	478018..478497	-	159	37520019	-	gll0450	-	hypothetical protein
451	 60.14	0	478664..479491	+	275	37520020	-	glr0451	-	hypothetical protein
452	 58.78	0	479504..479896	-	130	37520021	-	gll0452	-	hypothetical protein
453	 63.08	0	480859..481833	+	324	37520022	-	glr0453	-	hypothetical protein
454	 60.27	0	481891..483921	+	676	37520023	-	glr0454	-	hypothetical protein
455	 57.68	0	483925..485304	+	459	37520024	-	glr0455	-	hypothetical protein
456	 54.19	-1	485339..486412	+	357	37520025	-	glr0456	-	glycosyltransferase
457	 58.38	0	486426..487910	+	494	37520026	-	glr0457	-	hypothetical protein
458	 56.52	-1	487915..488574	+	219	37520027	-	glr0458	-	glycosyltransferase
459	 61.48	0	488609..489784	+	391	37520028	-	glr0459	-	glycosyltransferase
460	 55.44	-1	489800..491215	-	471	37520029	-	gll0460	-	hypothetical protein
461	 51.07	-2	491587..492477	+	296	37520030	-	glr0461	-	hypothetical protein
462	 55.28	-1	492553..494475	+	640	37520031	-	glr0462	-	hypothetical protein
463	 56.72	-1	494627..495862	+	411	37520032	-	glr0463	-	glycosyltransferase
464	 49.31	-2	495942..496880	+	312	37520033	-	glr0464	-	hypothetical protein
465	 56.64	-1	496976..497863	+	295	37520034	-	glr0465	-	hypothetical protein
466	 55.96	-1	497893..499116	+	407	37520035	-	glr0466	-	hypothetical protein
467	 57.87	0	499175..500698	+	507	37520036	-	glr0467	-	hypothetical protein
468	 58.36	0	501287..502369	+	360	37520037	rfbB	gvip048	-	dTDP-glucose 4-6-dehydratase
469	 63.81	0	502369..503244	+	291	37520038	rfbA	gvip049	-	glucose-1-phosphate thymidylyltransferase
470	 57.30	-1	503246..503800	+	184	37520039	rfbC	gvip050	-	dTDP-4-dehydrorhamnose 3,5-epimerase
471	 64.63	0	503871..504854	+	327	37520040	-	glr0471	-	mannose-1-phosphate guanyltransferase
472	 58.07	0	505141..505524	+	127	37520041	-	glr0472	-	hypothetical protein
473	 62.49	0	505528..506460	-	310	37520042	ppnK	gll0473	-	inorganic polyphosphate/ATP-NAD kinase
474	 52.54	-2	506562..506837	+	91	37520043	-	gsr0474	-	hypothetical protein
475	 51.57	-2	507077..508189	+	370	37520044	-	glr0475	-	glycosyltransferase
476	 66.15	0	508789..510327	+	512	37520045	-	glr0476	-	competence protein ComM-like protein
477	 62.91	0	510418..514008	-	1196	37520046	metH	gvip051	-	5-methyltetrahydrofolate--homocysteine S-methyltransferase
478	 61.94	0	514192..515037	-	281	37520047	-	gll0478	-	hypothetical protein
479	 38.06	-2	515072..516001	-	309	37520048	-	gll0479	-	hypothetical protein
480	 65.53	0	516903..518570	+	555	37520049	-	glr0480	-	thioredoxin reductase
481	 64.95	0	518666..519247	+	193	37520050	-	glr0481	-	hypothetical protein
482	 69.87	+1	519340..520212	+	290	37520051	-	glr0482	-	hypothetical protein
483	 69.21	+1	520244..520714	+	156	37520052	-	glr0483	-	hypothetical protein
484	 63.67	0	521128..521895	-	255	37520053	-	gll0484	-	aminoglycoside N3'-acetyltransferase
485	 64.54	0	521961..522617	-	218	37520054	-	gll0485	-	TetR family transcriptional regulatory protein
486	 63.48	0	522629..523789	-	386	37520055	-	gll0486	-	permease protein DevC-like protein
487	 68.12	+1	523782..524951	-	389	37520056	-	gll0487	-	permease protein DevB-like protein
488	 65.15	0	525056..525253	+	65	37520057	-	gsr0488	-	hypothetical protein
489	 54.73	-1	525429..526073	+	214	37520058	-	glr0489	-	hypothetical protein
490	 65.61	0	526510..528111	-	533	37520059	-	gll0490	-	phosphodiesterase/alkaline phosphatase D
491	 65.83	0	528201..528557	+	118	37520060	-	glr0491	-	hypothetical protein
492	 62.91	0	528551..529243	-	230	37520061	-	gll0492	-	ABC transporter ATP-binding protein
493	 61.31	0	529249..530481	-	410	37520062	-	gll0493	-	hypothetical protein
494	 63.30	0	530503..531630	-	375	37520063	-	gll0494	-	hypothetical protein
495	 65.14	0	531732..533042	-	436	37520064	-	gll0495	-	hypothetical protein
496	 65.64	0	533350..534222	-	290	37520065	-	gll0496	-	hypothetical protein
497	 61.59	0	534380..535561	+	393	37520066	-	glr0497	-	hypothetical protein
498	 65.08	0	535558..536880	+	440	37520067	-	glr0498	-	DNA-damage-inducible protein
499	 64.67	0	537211..537912	-	233	37520068	-	gll0499	-	hypothetical protein
500	 66.11	0	537983..541042	+	1019	37520069	-	glr0500	-	hypothetical protein
501	 70.94	+1	541032..541967	-	311	37520070	-	gll0501	-	sugar kinase
502	 67.08	+1	541974..542936	-	320	37520071	-	gll0502	-	fructokinase
503	 67.76	+1	542935..543759	+	274	37520072	-	glr0503	-	hypothetical protein
504	 62.02	0	543806..545095	+	429	37520073	-	glr0504	-	hypothetical protein
505	 50.07	-2	545170..545844	+	224	37520074	-	glr0505	-	hypothetical protein
506	 59.73	0	546096..546542	-	148	37520075	-	gll0506	-	bacterioferritin comigratory protein
507	 62.12	0	546607..546870	+	87	37520076	-	gsr0507	-	hypothetical protein
508	 67.44	+1	546904..547674	-	256	37520077	-	gll0508	-	hypothetical protein
509	 71.85	+2	547671..548114	-	147	37520078	-	gll0509	-	hypothetical protein
510	 64.50	0	548143..549807	-	554	37520079	ppx	gvip052	-	exopolyphosphatase
511	 60.98	0	549944..550066	-	40	37520080	petG	gvip053	-	cytochrome b6-f complex subunit PetG
512	 59.24	0	550163..550687	-	174	37520081	cysC	gvip054	-	adenylylsulfate kinase
513	 65.12	0	550839..552197	+	452	37520082	-	glr0513	-	hypothetical protein
514	 63.97	0	552338..553597	+	419	37520083	-	glr0514	-	Na+/H+-exchanging protein
515	 62.41	0	553622..554983	+	453	37520084	-	glr0515	-	Na+-transporting ATP synthase
516	 63.66	0	554988..555719	+	243	37520085	-	glr0516	-	hypothetical protein
517	 60.66	0	556087..556818	+	243	37520086	-	glr0517	-	hypothetical protein
518	 53.47	-1	556855..557763	-	302	37520087	-	gll0518	-	putative transposase
519	 57.71	0	557792..558193	-	133	37520088	-	gll0519	-	putative transposase
520	 53.73	-1	558247..558447	+	66	37520089	-	gsr0520	-	hypothetical protein
521	 66.97	+1	558625..560628	-	667	37520090	-	gll0521	-	transglycosylase
522	 68.31	+1	560625..562385	-	586	37520091	-	gll0522	-	N-acetylmuramoyl-L-alanine amidase
523	 60.82	0	562492..562833	+	113	37520092	-	glr0523	-	hypothetical protein
524	 66.19	0	562840..563673	-	277	37520093	-	gll0524	-	prephenate dehydratase
525	 68.40	+1	563683..564891	-	402	37520094	-	gll0525	-	NADH dehydrogenase
526	 58.26	0	565050..565406	-	118	37520095	-	gll0526	-	hypothetical protein
527	 64.44	0	565663..565887	-	74	37520096	-	gsl0527	-	hypothetical protein
528	 63.13	0	565895..566884	-	329	37520097	-	gll0528	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.