IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
371	 65.17	0	385225..386628	-	467	37519940	-	gll0371	-	putative transposase
372	 64.95	0	386920..387561	-	213	37519941	-	gll0372	-	hypothetical protein
373	 60.55	0	387592..389520	+	642	37519942	-	glr0373	-	cyclomaltodextrin glucanotransferase
374	 65.69	0	389550..390773	+	407	37519943	-	glr0374	-	N-acyl-L-amino acid amidohydrolase
375	 65.69	0	390875..392623	+	582	37519944	-	glr0375	-	hypothetical protein
376	 62.86	0	392640..394373	+	577	37519945	-	glr0376	-	two-component sensor histidine kinase
377	 65.42	0	394342..395061	-	239	37519946	cobI	gvip028	-	precorrin-2 methyltransferase
378	 68.54	+1	395058..396287	-	409	37519947	cobL	gvip029	-	precorrin-6Y methylase
379	 64.01	0	396342..396980	-	212	37519948	-	gll0379	-	two-component response regulator
380	 60.77	0	396973..398040	-	355	37519949	-	gll0380	-	two-component sensor histidine kinase
381	 64.62	0	398341..399660	+	439	37519950	-	glr0381	-	hypothetical protein
382	 63.44	0	399707..402934	+	1075	37519951	-	glr0382	-	cation efflux system membrane protein CzcA-like protein
383	 63.71	0	403202..405469	-	755	37519952	-	gll0383	-	potassium efflux transporter
384	 63.99	0	405587..406183	-	198	37519953	cobH	gvip030	-	precorrin-8X methylmutase
385	 62.44	0	406192..406854	+	220	37519954	cobO	gvip031	-	cob(I)alamin adenosyltransferase
386	 43.27	-2	407182..408318	+	378	37519955	-	glr0386	-	hypothetical protein
387	 62.32	0	408371..410005	-	544	37519956	-	gll0387	-	hypothetical protein
388	 65.25	0	410021..411436	+	471	37519957	-	glr0388	-	phosphoglucomutase/phosphomannomutase
389	 61.04	0	411428..411676	-	82	37519958	-	gsl0389	-	hypothetical protein
390	 58.33	0	411716..411979	+	87	37519959	-	gsr0390	-	hypothetical protein
391	 63.50	0	411984..412772	-	262	37519960	-	gll0391	-	hypothetical protein
392	 55.20	-1	412876..413154	+	92	37519961	-	gsr0392	-	hypothetical protein
393	 51.84	-2	413184..413864	+	226	37519962	-	glr0393	-	hypothetical protein
394	 62.83	0	414059..415780	-	573	37519963	crtO	gvip032	-	beta-carotene ketolase
395	 63.75	0	415943..416869	+	308	37519964	-	glr0395	-	hypothetical protein
396	 40.32	-2	416900..417700	-	266	37519965	-	gll0396	-	hypothetical protein
397	 65.64	0	418932..420098	-	388	37519966	bioF	gvip033	-	8-amino-7-oxononanoate synthase
398	 67.20	+1	420221..420976	+	251	37519967	-	glr0398	-	hypothetical protein
399	 61.32	0	420977..421612	-	211	37519968	rpl25	gvip034	-	50S ribosomal protein L25
400	 56.13	-1	421800..422150	+	116	37519969	-	glr0400	-	hypothetical protein
401	 64.52	0	422163..422999	-	278	37519970	ycf62	gvip035	-	hypothetical protein
402	 67.15	+1	423115..423321	-	68	37519971	ycf40	gvip036	-	hypothetical protein
403	 67.03	+1	423314..424414	-	366	37519972	thiE	gvip037	-	thiamine-phosphate pyrophosphorylase
404	 63.70	0	424535..426457	+	640	37519973	-	glr0404	-	hypothetical protein
405	 56.90	-1	426531..426827	-	98	37519974	-	gsl0405	-	hypothetical protein
406	 69.30	+1	427048..427881	+	277	37519975	tyrA	gvip038	-	arogenate dehydrogenase
407	 66.23	0	427910..428590	+	226	37519976	hisH	gvip039	-	imidazole glycerol phosphate synthase subunit HisH
408	 68.41	+1	428571..429029	-	152	37519977	-	gll0408	-	hypothetical protein
409	 67.65	+1	429019..429627	-	202	37519978	-	gll0409	-	hypothetical protein
410	 63.18	0	429655..430371	-	238	37519979	ho1	gvip040	-	heme oxygenase
411	 57.29	-1	430659..431042	+	127	37519980	-	glr0411	-	hypothetical protein
412	 63.67	0	431172..431939	+	255	37519981	-	glr0412	-	methionine aminopeptidase
413	 56.76	-1	431960..432181	+	73	37519982	infA	gvip041	-	translation initiation factor IF-1
414	 63.09	0	432198..435017	-	939	37519983	ppc	gvip042	-	phosphoenolpyruvate carboxylase
415	 63.37	0	435150..437000	-	616	37519984	-	gll0415	-	hypothetical protein
416	 66.33	0	437071..437958	-	295	37519985	crtE	gvip043	-	geranylgeranyl pyrophosphate synthase
417	 69.27	+1	437995..439530	-	511	37519986	-	gll0417	-	sugar hydrolase
418	 67.18	+1	439564..440721	+	385	37519987	-	glr0418	-	two-component sensor histidine kinase
419	 66.15	0	440830..441216	+	128	37519988	-	glr0419	-	hypothetical protein
420	 61.21	0	441240..442100	+	286	37519989	-	glr0420	-	oxidoreductase
421	 62.79	0	442090..443661	-	523	37519990	leuA	gvip044	-	alpha-isopropylmalate/homocitrate synthase family transferase
422	 59.57	0	443837..445105	+	422	37519991	-	glr0422	-	serine/threonine kinase
423	 57.38	0	445483..446085	+	200	37519992	-	glr0423	-	hypothetical protein
424	 66.07	0	446288..446455	-	55	37519993	-	gsl0424	-	hypothetical protein
425	 61.89	0	446649..448322	-	557	37519994	-	gll0425	-	hypothetical protein
426	 61.90	0	448365..448931	-	188	37519995	-	gll0426	-	hypothetical protein
427	 66.20	0	448965..458798	-	3277	37519996	-	gll0427	-	hypothetical protein
428	 61.58	0	458801..459331	-	176	37519997	-	gll0428	-	hypothetical protein
429	 65.22	0	459331..459606	-	91	37519998	-	gsl0429	-	hypothetical protein
430	 70.60	+1	459704..460339	-	211	37519999	-	gll0430	-	hypothetical protein
431	 63.94	0	460351..462441	-	696	37520000	-	gll0431	-	serine/threonine kinase
432	 66.49	0	462585..463721	+	378	37520001	-	glr0432	-	hypothetical protein
433	 68.21	+1	463718..464170	-	150	37520002	ycf41	gvip045	-	hypothetical protein
434	 58.76	0	464176..464466	-	96	37520003	rpsF	gvip046	-	30S ribosomal protein S6
435	 63.22	0	464612..466120	+	502	37520004	-	glr0435	-	long-chain-fatty-acid-CoA ligase
436	 57.01	-1	466174..467043	+	289	37520005	-	glr0436	-	ABC transporter ATP-binding protein
437	 58.05	0	467040..468629	+	529	37520006	-	glr0437	-	hypothetical protein
438	 61.45	0	468631..469320	+	229	37520007	-	glr0438	-	hypothetical protein
439	 67.18	+1	469357..469743	+	128	37520008	-	glr0439	-	hypothetical protein
440	 62.96	0	469757..470134	+	125	37520009	-	glr0440	-	hypothetical protein
441	 70.54	+1	470137..470523	+	128	37520010	-	glr0441	-	hypothetical protein
442	 60.67	0	470524..470790	-	88	37520011	-	gsl0442	-	phosphoribosylformylglycinamidine synthase subunit PurS
443	 66.45	0	470886..472256	+	456	37520012	-	glr0443	-	UDP-N-acetylglucosamine pyrophosphorylase
444	 64.90	0	472253..473044	-	263	37520013	surE	gll0444	-	stationary phase survival protein SurE
445	 60.92	0	473307..474350	+	347	37520014	-	glr0445	-	phosphate ABC transporter periplasmic phosphate-binding protein
446	 61.96	0	474386..475363	+	325	37520015	-	glr0446	-	phosphate ABC transporter permease protein
447	 61.26	0	475370..476257	+	295	37520016	-	glr0447	-	phosphate ABC transporter permease protein
448	 57.99	0	476275..477081	+	268	37520017	-	glr0448	-	phosphate ABC transporter ATP binding protein
449	 66.55	0	477154..478002	-	282	37520018	xer	gvip047	-	integrase/recombinase
450	 59.79	0	478018..478497	-	159	37520019	-	gll0450	-	hypothetical protein
451	 60.14	0	478664..479491	+	275	37520020	-	glr0451	-	hypothetical protein
452	 58.78	0	479504..479896	-	130	37520021	-	gll0452	-	hypothetical protein
453	 63.08	0	480859..481833	+	324	37520022	-	glr0453	-	hypothetical protein
454	 60.27	0	481891..483921	+	676	37520023	-	glr0454	-	hypothetical protein
455	 57.68	0	483925..485304	+	459	37520024	-	glr0455	-	hypothetical protein
456	 54.19	-1	485339..486412	+	357	37520025	-	glr0456	-	glycosyltransferase
457	 58.38	0	486426..487910	+	494	37520026	-	glr0457	-	hypothetical protein
458	 56.52	-1	487915..488574	+	219	37520027	-	glr0458	-	glycosyltransferase
459	 61.48	0	488609..489784	+	391	37520028	-	glr0459	-	glycosyltransferase
460	 55.44	-1	489800..491215	-	471	37520029	-	gll0460	-	hypothetical protein
461	 51.07	-2	491587..492477	+	296	37520030	-	glr0461	-	hypothetical protein
462	 55.28	-1	492553..494475	+	640	37520031	-	glr0462	-	hypothetical protein
463	 56.72	-1	494627..495862	+	411	37520032	-	glr0463	-	glycosyltransferase
464	 49.31	-2	495942..496880	+	312	37520033	-	glr0464	-	hypothetical protein
465	 56.64	-1	496976..497863	+	295	37520034	-	glr0465	-	hypothetical protein
466	 55.96	-1	497893..499116	+	407	37520035	-	glr0466	-	hypothetical protein
467	 57.87	0	499175..500698	+	507	37520036	-	glr0467	-	hypothetical protein
468	 58.36	0	501287..502369	+	360	37520037	rfbB	gvip048	-	dTDP-glucose 4-6-dehydratase
469	 63.81	0	502369..503244	+	291	37520038	rfbA	gvip049	-	glucose-1-phosphate thymidylyltransferase
470	 57.30	-1	503246..503800	+	184	37520039	rfbC	gvip050	-	dTDP-4-dehydrorhamnose 3,5-epimerase
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.