IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4123	 64.74	0	4319100..4320083	-	327	37523692	-	gll4123	-	oligopeptide ABC transporter ATP-binding protein
4124	 61.24	0	4320083..4321003	-	306	37523693	-	gll4124	-	oligopeptide ABC transporter permease protein
4125	 62.00	0	4321009..4321929	-	306	37523694	-	gll4125	-	oligopeptide ABC transporter permease protein
4126	 63.32	0	4321944..4323584	-	546	37523695	-	gll4126	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
4127	 62.93	0	4323565..4324446	-	293	37523696	-	gll4127	-	cyanophycinase
4128	 62.13	0	4324532..4325236	+	234	37523697	-	glr4128	-	two-component response regulator
4129	 65.93	0	4325389..4326204	+	271	37523698	-	glr4129	-	hypothetical protein
4130	 61.61	0	4326322..4327467	-	381	37523699	-	gll4130	-	ribonuclease
4131	 62.10	0	4327560..4328588	-	342	37523700	-	gll4131	-	ATP-dependent protease
4132	 57.28	-1	4328792..4329004	+	70	37523701	-	gsr4132	-	hypothetical protein
4133	 67.35	+1	4329413..4329706	-	97	37523702	-	gsl4133	-	hypothetical protein
4134	 69.73	+1	4329706..4330554	-	282	37523703	-	gll4134	-	hypothetical protein
4135	 65.78	0	4330660..4332462	-	600	37523704	-	gll4135	-	HlyB/MsbA family ABC transporter
4136	 65.21	0	4332513..4333817	-	434	37523705	-	gll4136	-	hypothetical protein
4137	 63.33	0	4333862..4335001	-	379	37523706	-	gll4137	-	hypothetical protein
4138	 65.52	0	4334982..4337771	+	929	37523707	-	glr4138	-	proteinase
4139	 68.88	+1	4337819..4338949	+	376	37523708	-	glr4139	-	hypothetical protein
4140	 63.91	0	4338985..4340868	+	627	37523709	-	glr4140	-	hypothetical protein
4141	 62.64	0	4340980..4341774	+	264	37523710	-	glr4141	-	sugar transport inner membrane protein
4142	 64.96	0	4341864..4343624	+	586	37523711	-	glr4142	-	hypothetical protein
4143	 59.65	0	4343617..4344015	-	132	37523712	-	gll4143	-	hypothetical protein
4144	 64.32	0	4344133..4346301	+	722	37523713	-	glr4144	-	hypothetical protein
4145	 62.50	0	4346314..4346577	+	87	37523714	-	gsr4145	-	hypothetical protein
4146	 63.47	0	4346614..4348302	+	562	37523715	-	glr4146	-	oligoendopeptidase
4147	 64.72	0	4348335..4349156	+	273	37523716	-	glr4147	-	hypothetical protein
4148	 65.57	0	4349153..4349335	-	60	37523717	-	gsl4148	-	hypothetical protein
4149	 58.87	0	4349385..4349756	-	123	37523718	-	gll4149	-	hypothetical protein
4150	 63.64	0	4349936..4351156	+	406	37523719	-	glr4150	-	hypothetical protein
4151	 60.88	0	4351235..4352824	+	529	37523720	-	glr4151	-	hypothetical protein
4152	 60.56	0	4352896..4353615	-	239	37523721	-	gll4152	-	hypothetical protein
4153	 61.18	0	4353724..4353978	+	84	37523722	-	gsr4153	-	hypothetical protein
4154	 47.37	-2	4354344..4354685	-	113	37523723	-	gll4154	-	hypothetical protein
4155	 57.58	0	4355231..4355395	+	54	37523724	-	gsr4155	-	hypothetical protein
4156	 66.96	+1	4355392..4356408	-	338	37523725	-	gll4156	-	dihydroflavonol-4-reductase
4157	 60.66	0	4356540..4357088	+	182	37523726	-	glr4157	-	hypothetical protein
4158	 65.66	0	4357134..4358027	+	297	37523727	-	glr4158	-	hypothetical protein
4159	 58.06	0	4358037..4358489	-	150	37523728	-	gll4159	-	hypothetical protein
4160	 64.32	0	4358563..4359543	-	326	37523729	-	gll4160	-	two-component response regulator
4161	 61.81	0	4359536..4360564	-	342	37523730	-	gll4161	-	two-component sensor histidine kinase
4162	 61.13	0	4360707..4361447	-	246	37523731	-	gll4162	-	two-component response regulator
4163	 63.89	0	4361627..4362526	+	299	37523732	-	glr4163	-	hypothetical protein
4164	 63.38	0	4362523..4363860	+	445	37523733	-	glr4164	-	hypothetical protein
4165	 65.32	0	4363878..4364324	+	148	37523734	-	glr4165	-	hypothetical protein
4166	 62.24	0	4364382..4365647	+	421	37523735	secD	gvip549	-	protein-export membrane protein
4167	 62.14	0	4365644..4366570	+	308	37523736	secF	gvip550	-	preprotein translocase subunit SecF
4168	 63.85	0	4366628..4367089	-	153	37523737	-	gll4168	-	hypothetical protein
4169	 66.89	+1	4367122..4368033	-	303	37523738	-	gll4169	-	cation efflux system protein CzcD-like protein
4170	 66.29	0	4368047..4371193	-	1048	37523739	-	gll4170	-	cation efflux system protein CzcA-like protein
4171	 70.21	+1	4371203..4372642	-	479	37523740	-	gll4171	-	cation efflux system protein CzcB-like protein
4172	 59.43	0	4372751..4373275	+	174	37523741	-	glr4172	-	hypothetical protein
4173	 69.65	+1	4373272..4374243	+	323	37523742	-	glr4173	-	hypothetical protein
4174	 64.20	0	4374253..4374576	+	107	37523743	-	glr4174	-	hypothetical protein
4175	 59.49	0	4374583..4374777	-	64	37523744	-	gsl4175	-	hypothetical protein
4176	 60.84	0	4374977..4376005	-	342	37523745	-	gll4176	-	hypothetical protein
4177	 62.46	0	4376232..4376564	+	110	37523746	-	glr4177	-	hypothetical protein
4178	 60.51	0	4376512..4378299	+	595	37523747	-	glr4178	-	hypothetical protein
4179	 58.23	0	4378496..4378744	+	82	37523748	-	gsr4179	-	hypothetical protein
4180	 68.22	+1	4378835..4379155	+	106	37523749	-	glr4180	-	hypothetical protein
4181	 66.86	+1	4379124..4380140	+	338	37523750	-	glr4181	-	tRNA/rRNA methyltransferase
4182	 66.67	0	4380220..4382796	+	858	37523751	-	glr4182	-	chloride channel protein
4183	 51.39	-2	4382960..4383247	+	95	37523752	-	gsr4183	-	hypothetical protein
4184	 40.13	-2	4383358..4384107	+	249	37523753	-	glr4184	-	hypothetical protein
4185	 48.20	-2	4384293..4384514	+	73	37523754	-	gsr4185	-	hypothetical protein
4186	 63.59	0	4384690..4385079	-	129	37523755	-	gll4186	-	hypothetical protein
4187	 63.37	0	4385184..4385486	-	100	37523756	-	gll4187	-	hypothetical protein
4188	 64.86	0	4385516..4386292	+	258	37523757	-	glr4188	-	enoyl-(acyl carrier protein) reductase
4189	 61.40	0	4386292..4386633	+	113	37523758	-	glr4189	-	divalent cation tolerance protein
4190	 61.25	0	4386718..4386957	-	79	37523759	-	gsl4190	-	putative transposase
4191	 57.71	0	4387304..4387705	+	133	37523760	-	glr4191	-	putative transposase
4192	 53.58	-1	4387734..4388642	+	302	37523761	-	glr4192	-	putative transposase
4193	 62.73	0	4388754..4389743	-	329	37523762	-	gll4193	-	hypothetical protein
4194	 61.08	0	4389896..4390486	-	196	37523763	grpE	gvip551	-	heat shock protein
4195	 62.12	0	4390674..4392059	+	461	37523764	tig	glr4195	-	trigger factor
4196	 61.11	0	4392091..4393404	+	437	37523765	clpX	gvip552	-	ATP-dependent protease ATP-binding subunit
4197	 51.02	-2	4393576..4394655	+	359	37523766	-	glr4197	-	hypothetical protein
4198	 56.57	-1	4394671..4395264	+	197	37523767	-	glr4198	-	coronafacate ligase
4199	 61.51	0	4395384..4396721	+	445	37523768	-	glr4199	-	hypothetical protein
4200	 63.90	0	4396776..4398869	-	697	37523769	-	gll4200	-	cell surface glycoprotein (s-layer protein) related protein
4201	 65.78	0	4399194..4400546	-	450	37523770	-	gll4201	-	glutathione reductase
4202	 64.18	0	4400680..4401603	+	307	37523771	-	glr4202	-	hypothetical protein
4203	 64.78	0	4401608..4402348	-	246	37523772	-	gll4203	-	dehydrogenase/reductase
4204	 59.94	0	4402453..4402779	+	108	37523773	-	glr4204	-	hypothetical protein
4205	 47.29	-2	4403244..4403501	-	85	37523774	-	gsl4205	-	hypothetical protein
4206	 62.30	0	4403579..4405477	+	632	37523775	-	glr4206	-	protease IV
4207	 49.70	-2	4405534..4405869	+	111	37523776	-	glr4207	-	hypothetical protein
4208	 59.26	0	4405966..4406235	+	89	37523777	-	gsr4208	-	hypothetical protein
4209	 56.99	-1	4406232..4406510	-	92	37523778	-	gsl4209	-	hypothetical protein
4210	 63.49	0	4406513..4407487	-	324	37523779	-	gll4210	-	ABC transporter ATP-binding protein
4211	 66.56	0	4407699..4409534	+	611	37523780	-	glr4211	-	two-component response regulator
4212	 62.49	0	4409534..4411594	+	686	37523781	-	glr4212	-	two-component hybrid sensor and regulator
4213	 60.72	0	4411591..4411977	+	128	37523782	-	glr4213	-	two-component response regulator
4214	 61.71	0	4412128..4412631	+	167	37523783	-	glr4214	-	hypothetical protein
4215	 66.63	0	4412748..4415513	+	921	37523784	-	glr4215	-	cation-transporting ATPase PacL-like protein
4216	 63.33	0	4415540..4418506	-	988	37523785	-	gll4216	-	hypothetical protein
4217	 65.14	0	4418678..4420246	+	522	37523786	-	glr4217	-	hypothetical protein
4218	 67.87	+1	4420247..4421491	+	414	37523787	-	glr4218	-	hypothetical protein
4219	 49.46	-2	4421532..4422176	-	214	37523788	-	gll4219	-	hypothetical protein
4220	 60.75	0	4422231..4422602	-	123	37523789	-	gll4220	-	hypothetical protein
4221	 55.38	-1	4422599..4422970	-	123	37523790	-	gll4221	-	hypothetical protein
4222	 64.47	0	4423081..4424625	-	514	37523791	-	gll4222	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.