IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4032	 63.08	0	4232141..4232530	+	129	37523601	-	glr4032	-	ribosome binding facror A
4033	 62.68	0	4232599..4232949	+	116	37523602	-	glr4033	-	hypothetical protein
4034	 65.03	0	4233010..4234230	+	406	37523603	argJ	gvip544	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
4035	 48.40	-2	4234321..4235037	+	238	37523604	-	glr4035	-	hypothetical protein
4036	 60.73	0	4235639..4235992	-	117	37523605	-	gll4036	-	hypothetical protein
4037	 55.31	-1	4235967..4236239	-	90	37523606	-	gsl4037	-	LuxR family transcriptional regulatory protein
4038	 62.32	0	4236311..4237483	-	390	37523607	-	gll4038	-	hypothetical protein
4039	 66.92	+1	4237639..4238814	+	391	37523608	-	glr4039	-	hypothetical protein
4040	 66.40	0	4238852..4239229	+	125	37523609	-	glr4040	-	hypothetical protein
4041	 66.49	0	4239235..4240359	+	374	37523610	-	glr4041	-	hypothetical protein
4042	 53.85	-1	4240472..4240666	+	64	37523611	-	gsr4042	-	hypothetical protein
4043	 58.18	0	4240809..4241291	+	160	37523612	-	glr4043	-	glutathione peroxidase
4044	 58.73	0	4241293..4241796	-	167	37523613	-	gll4044	-	hypothetical protein
4045	 61.76	0	4241861..4242166	-	101	37523614	-	gll4045	-	hypothetical protein
4046	 66.67	0	4242163..4242372	-	69	37523615	-	gsl4046	-	hypothetical protein
4047	 67.87	+1	4242552..4244795	+	747	37523616	-	glr4047	-	cation-transporting ATPase
4048	 60.23	0	4244922..4245263	+	113	37523617	-	glr4048	-	hypothetical protein
4049	 51.80	-2	4245325..4245546	+	73	37523618	-	gsr4049	-	hypothetical protein
4050	 55.56	-1	4245543..4245866	+	107	37523619	-	glr4050	-	hypothetical protein
4051	 66.37	0	4245863..4246528	+	221	37523620	-	glr4051	-	hypothetical protein
4052	 55.69	-1	4246584..4247093	+	169	37523621	-	glr4052	-	hypothetical protein
4053	 60.12	0	4247159..4247479	-	106	37523622	-	gll4053	-	hypothetical protein
4054	 65.77	0	4247615..4249174	+	519	37523623	-	glr4054	-	amidase
4055	 67.51	+1	4249164..4249994	-	276	37523624	-	gll4055	-	hypothetical protein
4056	 66.58	0	4249945..4251141	-	398	37523625	-	gll4056	-	hypothetical protein
4057	 66.56	0	4251199..4253112	+	637	37523626	shc	gvip545	-	squalene-hopene cyclase
4058	 62.36	0	4253292..4254383	+	363	37523627	-	glr4058	-	farnesyl-diphosphate farnesyltransferase
4059	 61.11	0	4254416..4254811	-	131	37523628	-	gll4059	-	hypothetical protein
4060	 64.40	0	4254811..4255119	-	102	37523629	-	gll4060	-	hypothetical protein
4061	 63.09	0	4255526..4255972	+	148	37523630	-	glr4061	-	hypothetical protein
4062	 64.64	0	4255984..4256724	+	246	37523631	-	glr4062	-	hypothetical protein
4063	 64.75	0	4256692..4257474	-	260	37523632	-	gll4063	-	hypothetical protein
4064	 53.06	-1	4257554..4258891	-	445	37523633	-	gll4064	-	hypothetical protein
4065	 61.70	0	4259223..4259987	+	254	37523634	-	glr4065	-	putative transposase
4066	 60.10	0	4260112..4260873	-	253	37523635	-	gll4066	-	putative transposase
4067	 60.22	0	4260870..4261613	-	247	37523636	-	gll4067	-	putative transposase
4068	 60.81	0	4261635..4262420	-	261	37523637	-	gll4068	-	putative transposase
4069	 61.05	0	4262485..4262751	-	88	37523638	-	gsl4069	-	hypothetical protein
4070	 61.24	0	4262997..4264931	-	644	37523639	-	gll4070	-	arginine decarboxylase
4071	 64.65	0	4265023..4265616	-	197	37523640	-	gll4071	-	hypothetical protein
4072	 63.53	0	4265792..4268632	+	946	37523641	-	glr4072	-	serine/threonine kinase
4073	 63.74	0	4268843..4270621	+	592	37523642	-	glr4073	-	hypothetical protein
4074	 50.42	-2	4270844..4271083	-	79	37523643	-	gsl4074	-	hypothetical protein
4075	 53.49	-1	4271150..4271536	+	128	37523644	-	glr4075	-	putative transposase
4076	 55.99	-1	4271569..4272027	+	152	37523645	-	glr4076	-	putative transposase
4077	 65.18	0	4272162..4273982	-	606	37523646	-	gll4077	-	hypothetical protein
4078	 62.09	0	4274017..4275459	-	480	37523647	cls	gll4078	-	cardiolipin synthetase
4079	 63.20	0	4275461..4276297	-	278	37523648	-	gll4079	-	hypothetical protein
4080	 59.38	0	4276317..4276865	-	182	37523649	-	gll4080	-	hypothetical protein
4081	 63.29	0	4276886..4279429	-	847	37523650	leuS	gvip546	-	leucyl-tRNA synthetase
4082	 61.18	0	4279785..4280495	+	236	37523651	-	glr4082	-	hypothetical protein
4083	 62.23	0	4280864..4282780	-	638	37523652	dnaG	gvip547	-	DNA primase
4084	 63.03	0	4282948..4283304	+	118	37523653	-	glr4084	-	hypothetical protein
4085	 57.38	0	4283345..4283581	+	78	37523654	-	gsr4085	-	hypothetical protein
4086	 64.78	0	4283620..4284363	-	247	37523655	-	gll4086	-	hypothetical protein
4087	 65.07	0	4284516..4286453	+	645	37523656	-	glr4087	-	aconitate hydratase
4088	 59.49	0	4286485..4287111	-	208	37523657	-	gll4088	-	hypothetical protein
4089	 58.97	0	4287181..4287570	+	129	37523658	-	glr4089	-	hypothetical protein
4090	 57.55	0	4287625..4288008	+	127	37523659	-	glr4090	-	hypothetical protein
4091	 63.14	0	4288328..4288894	-	188	37523660	-	gll4091	-	hypothetical protein
4092	 49.63	-2	4289005..4291728	-	907	37523661	-	gll4092	-	kinesin light chain
4093	 59.95	0	4291713..4293245	+	510	37523662	-	glr4093	-	kinesin light chain
4094	 60.14	0	4293277..4293690	+	137	37523663	-	glr4094	-	hypothetical protein
4095	 61.61	0	4293787..4294914	-	375	37523664	-	gll4095	-	hypothetical protein
4096	 55.83	-1	4294995..4295234	-	79	37523665	-	gsl4096	-	hypothetical protein
4097	 63.86	0	4295272..4295949	-	225	37523666	-	gll4097	-	two-component response regulator
4098	 63.33	0	4295975..4297324	-	449	37523667	-	gll4098	-	two-component sensor histidine kinase
4099	 65.95	0	4297337..4298179	+	280	37523668	-	glr4099	-	hypothetical protein
4100	 65.17	0	4298235..4299908	+	557	37523669	-	glr4100	-	bacteriophage major tail sheath protein
4101	 61.69	0	4299996..4300457	+	153	37523670	-	glr4101	-	hypothetical protein
4102	 58.74	0	4300494..4300985	+	163	37523671	-	glr4102	-	hypothetical protein
4103	 62.60	0	4301001..4301516	+	171	37523672	-	glr4103	-	hypothetical protein
4104	 61.77	0	4301518..4301844	+	108	37523673	-	glr4104	-	hypothetical protein
4105	 64.25	0	4301869..4302240	+	123	37523674	-	glr4105	-	hypothetical protein
4106	 65.61	0	4302318..4302506	+	62	37523675	-	gsr4106	-	hypothetical protein
4107	 65.86	0	4302668..4303540	+	290	37523676	-	glr4107	-	serine/threonine kinase
4108	 63.44	0	4303583..4304761	+	392	37523677	-	glr4108	-	aspartate aminotransferase
4109	 53.49	-1	4304789..4305418	+	209	37523678	-	glr4109	-	hypothetical protein
4110	 64.33	0	4305570..4306595	+	341	37523679	-	glr4110	-	hypothetical protein
4111	 65.78	0	4306802..4307821	-	339	37523680	-	gll4111	-	alcohol dehydrogenase
4112	 68.67	+1	4308133..4309875	+	580	37523681	-	glr4112	-	hypothetical protein
4113	 60.71	0	4309938..4310558	-	206	37523682	-	gll4113	-	hypothetical protein
4114	 59.70	0	4310696..4311484	+	262	37523683	-	glr4114	-	ABC transporter ATP-binding protein
4115	 63.25	0	4311506..4312648	+	380	37523684	-	glr4115	-	hypothetical protein
4116	 55.42	-1	4312711..4312959	-	82	37523685	-	gsl4116	-	hypothetical protein
4117	 55.14	-1	4313008..4313250	-	80	37523686	-	gsl4117	-	hypothetical protein
4118	 53.01	-1	4313228..4313476	+	82	37523687	-	gsr4118	-	hypothetical protein
4119	 65.30	0	4313511..4314464	+	317	37523688	ycf56	gvip548	-	hypothetical protein
4120	 62.06	0	4314837..4317092	+	751	37523689	-	glr4120	-	hypothetical protein
4121	 64.34	0	4317190..4318047	+	285	37523690	-	glr4121	-	hypothetical protein
4122	 66.10	0	4318067..4319116	-	349	37523691	-	gll4122	-	oligopeptide ABC transporter ATP-binding protein
4123	 64.74	0	4319100..4320083	-	327	37523692	-	gll4123	-	oligopeptide ABC transporter ATP-binding protein
4124	 61.24	0	4320083..4321003	-	306	37523693	-	gll4124	-	oligopeptide ABC transporter permease protein
4125	 62.00	0	4321009..4321929	-	306	37523694	-	gll4125	-	oligopeptide ABC transporter permease protein
4126	 63.32	0	4321944..4323584	-	546	37523695	-	gll4126	-	oligopeptide ABC transporter periplasmic oligopeptide-binding protein
4127	 62.93	0	4323565..4324446	-	293	37523696	-	gll4127	-	cyanophycinase
4128	 62.13	0	4324532..4325236	+	234	37523697	-	glr4128	-	two-component response regulator
4129	 65.93	0	4325389..4326204	+	271	37523698	-	glr4129	-	hypothetical protein
4130	 61.61	0	4326322..4327467	-	381	37523699	-	gll4130	-	ribonuclease
4131	 62.10	0	4327560..4328588	-	342	37523700	-	gll4131	-	ATP-dependent protease
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.