IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3963	 67.09	+1	4158475..4160601	+	708	37523532	-	glr3963	-	thiol-disulfide interchange protein DsbD-like protein
3964	 62.25	0	4160631..4161242	+	203	37523533	-	glr3964	-	hypothetical protein
3965	 43.13	-2	4161387..4162550	-	387	37523534	-	gll3965	-	hypothetical protein
3966	 62.33	0	4163310..4168010	-	1566	37523535	-	gll3966	-	ribonucleotide reductase large subunit
3967	 57.49	0	4168239..4168445	+	68	37523536	-	gsr3967	-	hypothetical protein
3968	 60.09	0	4168445..4169083	+	212	37523537	-	glr3968	-	ATP-dependent protease
3969	 65.48	0	4169098..4170192	+	364	37523538	-	glr3969	-	alanine dehydrogenase
3970	 69.68	+1	4170185..4170847	+	220	37523539	-	glr3970	-	hypothetical protein
3971	 63.69	0	4170853..4171926	+	357	37523540	-	glr3971	-	glycosyltransferase
3972	 62.60	0	4172211..4173317	-	368	37523541	-	gll3972	-	hypothetical protein
3973	 61.96	0	4173589..4174332	-	247	37523542	-	gll3973	-	hypothetical protein
3974	 61.42	0	4174400..4176592	-	730	37523543	-	gll3974	-	ferrichrome-iron receptor
3975	 62.60	0	4176654..4177268	+	204	37523544	-	glr3975	-	hypothetical protein
3976	 62.29	0	4177289..4179526	-	745	37523545	-	gll3976	-	ferrichrome-iron receptor
3977	 67.39	+1	4179719..4179994	-	91	37523546	-	gsl3977	-	hypothetical protein
3978	 70.26	+1	4180100..4181074	-	324	37523547	-	gll3978	-	hypothetical protein
3979	 66.16	0	4181078..4182061	-	327	37523548	-	gll3979	-	hypothetical protein
3980	 69.58	+1	4182087..4183529	+	480	37523549	recQ	gvip539	-	ATP-dependent DNA helicase
3981	 58.72	0	4183575..4183964	-	129	37523550	-	gll3981	-	hypothetical protein
3982	 58.10	0	4183948..4184262	-	104	37523551	-	gll3982	-	hypothetical protein
3983	 62.32	0	4184335..4185969	-	544	37523552	-	gll3983	-	phosphoglucomutase
3984	 64.32	0	4186410..4186964	-	184	37523553	-	gll3984	-	hypothetical protein
3985	 65.17	0	4187126..4187527	+	133	37523554	-	glr3985	-	hypothetical protein
3986	 67.02	+1	4187531..4189498	+	655	37523555	-	glr3986	-	two-component sensor histidine kinase
3987	 64.46	0	4189771..4190991	+	406	37523556	-	glr3987	-	hypothetical protein
3988	 61.12	0	4191022..4194174	+	1050	37523557	-	glr3988	-	RND multidrug efflux transporter
3989	 62.05	0	4194257..4194949	+	230	37523558	-	glr3989	-	hypothetical protein
3990	 65.22	0	4194989..4195888	+	299	37523559	-	glr3990	-	hypothetical protein
3991	 61.33	0	4195875..4196249	+	124	37523560	-	glr3991	-	hypothetical protein
3992	 62.32	0	4196264..4197160	+	298	37523561	-	glr3992	-	LysR family transcriptional regulator
3993	 68.79	+1	4197163..4197444	+	93	37523562	-	gsr3993	-	acylphosphatase
3994	 59.56	0	4197681..4197905	-	74	37523563	-	gsl3994	-	hypothetical protein
3995	 60.53	0	4197908..4198249	-	113	37523564	-	gll3995	-	hypothetical protein
3996	 61.60	0	4198277..4198651	-	124	37523565	-	gll3996	-	hypothetical protein
3997	 64.75	0	4198703..4200685	-	660	37523566	-	gll3997	-	hypothetical protein
3998	 62.11	0	4200756..4201985	-	409	37523567	-	gll3998	-	isocitrate dehydrogenase
3999	 62.55	0	4202247..4202513	+	88	37523568	-	gsr3999	-	hypothetical protein
4000	 57.07	-1	4202606..4202803	+	65	37523569	-	gsr4000	-	hypothetical protein
4001	 64.35	0	4203105..4203320	+	71	37523570	-	gsr4001	-	hypothetical protein
4002	 61.50	0	4203650..4206748	-	1032	37523571	-	gll4002	-	hypothetical protein
4003	 66.13	0	4207025..4208884	-	619	37523572	-	gll4003	-	hypothetical protein
4004	 67.62	+1	4208892..4209833	-	313	37523573	-	gll4004	-	hypothetical protein
4005	 58.76	0	4209964..4210254	-	96	37523574	-	gsl4005	-	hypothetical protein
4006	 68.13	+1	4210371..4211120	+	249	37523575	ycf23	gvip540	-	hypothetical protein
4007	 60.58	0	4211117..4211494	+	125	37523576	-	glr4007	-	hypothetical protein
4008	 63.66	0	4211704..4212102	+	132	37523577	-	glr4008	-	acyl-carrier protein synthase
4009	 62.40	0	4212099..4212473	-	124	37523578	-	gll4009	-	hypothetical protein
4010	 64.67	0	4212680..4213732	+	350	37523579	argC	gvip541	-	N-acetyl-gamma-glutamyl-phosphate reductase
4011	 61.08	0	4213787..4214323	-	178	37523580	-	gll4011	-	hypothetical protein
4012	 66.23	0	4214525..4215445	+	306	37523581	murQ	glr4012	-	N-acetylmuramic acid-6-phosphate etherase
4013	 59.77	0	4215452..4216249	-	265	37523582	-	gll4013	-	hypothetical protein
4014	 64.66	0	4216316..4217563	-	415	37523583	-	gll4014	-	3-oxoacyl-(acyl carrier protein) synthase II
4015	 62.97	0	4217674..4218999	+	441	37523584	-	glr4015	-	hypothetical protein
4016	 66.99	+1	4219003..4219623	+	206	37523585	-	glr4016	-	hypothetical protein
4017	 60.54	0	4219697..4220578	+	293	37523586	-	glr4017	-	serine/threonine kinase
4018	 58.24	0	4220244..4221014	+	256	37523587	-	glr4018	-	serine/threonine kinase
4019	 54.22	-1	4221166..4221615	-	149	37523588	-	gll4019	-	hypothetical protein
4020	 64.87	0	4221775..4222053	+	92	37523589	-	gsr4020	-	hypothetical protein
4021	 59.09	0	4222067..4222396	+	109	37523590	-	glr4021	-	hypothetical protein
4022	 63.31	0	4222580..4223650	-	356	37523591	-	gll4022	-	hypothetical protein
4023	 69.59	+1	4223680..4224330	-	216	37523592	-	gll4023	-	hypothetical protein
4024	 57.32	-1	4224341..4224586	-	81	37523593	-	gsl4024	-	hypothetical protein
4025	 60.27	0	4224612..4224908	-	98	37523594	-	gsl4025	-	hypothetical protein
4026	 61.85	0	4224910..4225179	-	89	37523595	rps15	gvip542	-	30S ribosomal protein S15
4027	 67.84	+1	4225324..4226772	+	482	37523596	-	glr4027	-	RND efflux membrane fusion protein
4028	 63.50	0	4226769..4229894	+	1041	37523597	-	glr4028	-	RND efflux transporter
4029	 63.33	0	4229902..4230861	-	319	37523598	-	gll4029	-	hypothetical protein
4030	 67.11	+1	4230940..4231611	+	223	37523599	-	glr4030	-	hypothetical protein
4031	 59.31	0	4231621..4231824	+	67	37523600	ycf33	gvip543	-	hypothetical protein
4032	 63.08	0	4232141..4232530	+	129	37523601	-	glr4032	-	ribosome binding facror A
4033	 62.68	0	4232599..4232949	+	116	37523602	-	glr4033	-	hypothetical protein
4034	 65.03	0	4233010..4234230	+	406	37523603	argJ	gvip544	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
4035	 48.40	-2	4234321..4235037	+	238	37523604	-	glr4035	-	hypothetical protein
4036	 60.73	0	4235639..4235992	-	117	37523605	-	gll4036	-	hypothetical protein
4037	 55.31	-1	4235967..4236239	-	90	37523606	-	gsl4037	-	LuxR family transcriptional regulatory protein
4038	 62.32	0	4236311..4237483	-	390	37523607	-	gll4038	-	hypothetical protein
4039	 66.92	+1	4237639..4238814	+	391	37523608	-	glr4039	-	hypothetical protein
4040	 66.40	0	4238852..4239229	+	125	37523609	-	glr4040	-	hypothetical protein
4041	 66.49	0	4239235..4240359	+	374	37523610	-	glr4041	-	hypothetical protein
4042	 53.85	-1	4240472..4240666	+	64	37523611	-	gsr4042	-	hypothetical protein
4043	 58.18	0	4240809..4241291	+	160	37523612	-	glr4043	-	glutathione peroxidase
4044	 58.73	0	4241293..4241796	-	167	37523613	-	gll4044	-	hypothetical protein
4045	 61.76	0	4241861..4242166	-	101	37523614	-	gll4045	-	hypothetical protein
4046	 66.67	0	4242163..4242372	-	69	37523615	-	gsl4046	-	hypothetical protein
4047	 67.87	+1	4242552..4244795	+	747	37523616	-	glr4047	-	cation-transporting ATPase
4048	 60.23	0	4244922..4245263	+	113	37523617	-	glr4048	-	hypothetical protein
4049	 51.80	-2	4245325..4245546	+	73	37523618	-	gsr4049	-	hypothetical protein
4050	 55.56	-1	4245543..4245866	+	107	37523619	-	glr4050	-	hypothetical protein
4051	 66.37	0	4245863..4246528	+	221	37523620	-	glr4051	-	hypothetical protein
4052	 55.69	-1	4246584..4247093	+	169	37523621	-	glr4052	-	hypothetical protein
4053	 60.12	0	4247159..4247479	-	106	37523622	-	gll4053	-	hypothetical protein
4054	 65.77	0	4247615..4249174	+	519	37523623	-	glr4054	-	amidase
4055	 67.51	+1	4249164..4249994	-	276	37523624	-	gll4055	-	hypothetical protein
4056	 66.58	0	4249945..4251141	-	398	37523625	-	gll4056	-	hypothetical protein
4057	 66.56	0	4251199..4253112	+	637	37523626	shc	gvip545	-	squalene-hopene cyclase
4058	 62.36	0	4253292..4254383	+	363	37523627	-	glr4058	-	farnesyl-diphosphate farnesyltransferase
4059	 61.11	0	4254416..4254811	-	131	37523628	-	gll4059	-	hypothetical protein
4060	 64.40	0	4254811..4255119	-	102	37523629	-	gll4060	-	hypothetical protein
4061	 63.09	0	4255526..4255972	+	148	37523630	-	glr4061	-	hypothetical protein
4062	 64.64	0	4255984..4256724	+	246	37523631	-	glr4062	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.