IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3661	 69.10	+1	3862814..3867862	-	1682	37523230	-	gll3661	-	WD-40 repeat-containing protein
3662	 58.64	0	3867990..3868400	-	136	37523231	-	gll3662	-	hypothetical protein
3663	 67.99	+1	3868563..3869771	-	402	37523232	-	gll3663	-	hypothetical protein
3664	 64.37	0	3869789..3871051	-	420	37523233	-	gll3664	-	hypothetical protein
3665	 67.63	+1	3871256..3871981	-	241	37523234	-	gll3665	-	hypothetical protein
3666	 61.20	0	3872134..3872517	+	127	37523235	-	glr3666	-	hypothetical protein
3667	 67.43	+1	3872517..3873434	+	305	37523236	glpD	gvip496	-	NAD+ dependent glycerol-3-phosphate dehydrogenase
3668	 52.70	-1	3873461..3873682	+	73	37523237	-	gsr3668	-	hypothetical protein
3669	 65.62	0	3873914..3875245	+	443	37523238	pyrC	gvip497	-	dihydroorotase
3670	 60.78	0	3875220..3875678	-	152	37523239	-	gll3670	-	hypothetical protein
3671	 54.67	-1	3875723..3876022	+	99	37523240	-	gsr3671	-	hypothetical protein
3672	 62.64	0	3876063..3877799	-	578	37523241	-	gll3672	-	HlyB/MsbA family ABC transporter
3673	 65.46	0	3877867..3879027	+	386	37523242	-	glr3673	-	hypothetical protein
3674	 63.95	0	3879208..3880092	+	294	37523243	-	glr3674	-	hypothetical protein
3675	 63.97	0	3880658..3882214	+	518	37523244	-	glr3675	-	two-component sensor histidine kinase
3676	 67.64	+1	3882230..3882949	-	239	37523245	-	gll3676	-	hypothetical protein
3677	 66.67	0	3883181..3884230	-	349	37523246	-	gll3677	-	hypothetical protein
3678	 67.88	+1	3884199..3885935	+	578	37523247	-	glr3678	-	hypothetical protein
3679	 67.06	+1	3885995..3886753	+	252	37523248	-	glr3679	-	hypothetical protein
3680	 59.90	0	3887007..3889238	-	743	37523249	-	gll3680	-	hypothetical protein
3681	 62.18	0	3889446..3889757	-	103	37523250	-	gll3681	-	hypothetical protein
3682	 63.28	0	3889817..3890791	-	324	37523251	gshB	gvip498	-	glutathione synthetase
3683	 57.58	0	3890788..3891051	-	87	37523252	-	gsl3683	-	glutaredoxin
3684	 67.19	+1	3891170..3891937	+	255	37523253	-	glr3684	-	hydrolase, CbbY protein
3685	 68.95	+1	3891942..3892817	-	291	37523254	-	gll3685	-	hypothetical protein
3686	 64.63	0	3892777..3894246	+	489	37523255	-	glr3686	-	peptidase
3687	 68.78	+1	3894243..3895709	+	488	37523256	-	glr3687	-	peptidase
3688	 62.67	0	3895782..3896807	-	341	37523257	-	gll3688	-	hypothetical protein
3689	 64.39	0	3896971..3898419	-	482	37523258	-	gll3689	-	lignostilbene-alpha,beta-dioxygenase
3690	 68.49	+1	3898481..3899359	-	292	37523259	truB	gll3690	-	tRNA pseudouridine synthase B
3691	 63.45	0	3899564..3900340	+	258	37523260	psbO	gvip499	-	photosystem II manganese-stabilizing polypeptide
3692	 66.46	0	3900464..3901453	+	329	37523261	-	glr3692	-	3-oxoacyl-(acyl carrier protein) synthase III
3693	 63.83	0	3901535..3903862	+	775	37523262	-	glr3693	-	hypothetical protein
3694	 59.78	0	3904092..3905543	-	483	37523263	-	gll3694	-	hypothetical protein
3695	 67.11	+1	3905624..3906982	+	452	37523264	cobB	gvip500	-	cobyrinic acid a,c-diamide synthase
3696	 67.82	+1	3907038..3907733	+	231	37523265	-	glr3696	-	hypothetical protein
3697	 64.73	0	3907872..3908336	+	154	37523266	-	glr3697	-	hypothetical protein
3698	 57.02	-1	3908442..3908669	+	75	37523267	-	gsr3698	-	hypothetical protein
3699	 64.24	0	3908736..3908900	-	54	37523268	-	gsl3699	-	hypothetical protein
3700	 57.47	0	3908907..3908993	-	28	37523269	petN	gvip501	-	cytochrome b6-f complex subunit VIII
3701	 58.62	0	3909169..3909603	+	144	37523270	psaD	gvip502	-	photosystem I reaction centre subunit II
3702	 59.71	0	3909640..3910200	-	186	37523271	rfbC	gvip503	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3703	 63.62	0	3910305..3911288	-	327	37523272	-	gll3703	-	mannose-1-phosphate guanyltransferase
3704	 65.25	0	3911378..3912577	-	399	37523273	-	gll3704	-	hypothetical protein
3705	 61.91	0	3912671..3915277	-	868	37523274	-	gll3705	-	hypothetical protein
3706	 63.37	0	3915521..3917494	-	657	37523275	-	gll3706	-	hypothetical protein
3707	 60.34	0	3917621..3918727	-	368	37523276	-	gll3707	-	hypothetical protein
3708	 56.67	-1	3918764..3919603	-	279	37523277	-	gll3708	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3709	 63.81	0	3919631..3921100	-	489	37523278	-	gll3709	-	hypothetical protein
3710	 62.98	0	3921097..3922155	-	352	37523279	-	gll3710	-	hypothetical protein
3711	 65.62	0	3922230..3922706	-	158	37523280	-	gll3711	-	glucosyltransferase EpsF-like protein
3712	 60.22	0	3922703..3923152	-	149	37523281	-	gll3712	-	glucosyltransferase EpsE-like protein
3713	 65.64	0	3923201..3924469	-	422	37523282	-	gll3713	-	glucosyltransferase
3714	 67.58	+1	3924361..3925563	-	400	37523283	-	gll3714	-	hypothetical protein
3715	 63.14	0	3925556..3926917	-	453	37523284	-	gll3715	-	hypothetical protein
3716	 65.45	0	3926914..3928965	-	683	37523285	-	gll3716	-	hypothetical protein
3717	 66.46	0	3928979..3929950	-	323	37523286	-	gll3717	-	hypothetical protein
3718	 64.49	0	3930005..3931063	-	352	37523287	-	gll3718	-	glucosyltransferase
3719	 64.72	0	3931090..3932478	-	462	37523288	-	gll3719	-	UDP-glucose dehydrogenase
3720	 62.99	0	3932539..3932973	-	144	37523289	-	gll3720	-	hypothetical protein
3721	 61.20	0	3932986..3933753	-	255	37523290	-	gll3721	-	glucosyltransferase
3722	 62.24	0	3933710..3934003	-	97	37523291	-	gsl3722	-	putative transposase
3723	 59.03	0	3934269..3934805	-	178	37523292	-	gll3723	-	hypothetical protein
3724	 58.14	0	3935894..3937219	-	441	37523293	-	gll3724	-	proton/sodium-glutamate symport protein
3725	 68.09	+1	3937273..3938118	-	281	37523294	-	gll3725	-	hypothetical protein
3726	 59.34	0	3938241..3938663	+	140	37523295	-	glr3726	-	hypothetical protein
3727	 70.23	+1	3938660..3939388	-	242	37523296	cobS	gvip504	-	cobalamin synthase
3728	 63.70	0	3939517..3940056	+	179	37523297	-	glr3728	-	hypothetical protein
3729	 66.00	0	3940060..3940659	+	199	37523298	-	glr3729	-	hypothetical protein
3730	 59.04	0	3940652..3941149	+	165	37523299	-	glr3730	-	hypothetical protein
3731	 68.61	+1	3941144..3942016	-	290	37523300	-	gll3731	-	hypothetical protein
3732	 66.59	0	3942301..3943626	-	441	37523301	murD	gvip505	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
3733	 61.03	0	3943758..3944183	+	141	37523302	-	glr3733	-	FUR family transcriptional regulator
3734	 64.61	0	3944296..3944781	+	161	37523303	-	glr3734	-	rubrerythrin-like protein
3735	 62.36	0	3944843..3945910	-	355	37523304	desA	gvip506	-	delta 12 acyl-lipid desaturase
3736	 65.83	0	3946195..3948927	-	910	37523305	-	gll3736	-	two-component sensor histidine kinase
3737	 66.91	+1	3949006..3949416	-	136	37523306	-	gll3737	-	hypothetical protein
3738	 65.62	0	3949409..3950461	-	350	37523307	mraY	gll3738	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
3739	 66.75	0	3950515..3951723	+	402	37523308	-	glr3739	-	molybdopterin biosynthesis protein MoaA-like protein
3740	 63.64	0	3951729..3952421	-	230	37523309	-	gll3740	-	carboxymethylenebutenolidase
3741	 69.81	+1	3952562..3953485	+	307	37523310	-	glr3741	-	serine protease
3742	 65.77	0	3953559..3954224	+	221	37523311	-	glr3742	-	LuxR family transcriptional regulatory protein
3743	 65.41	0	3954221..3954697	-	158	37523312	-	gll3743	-	hypothetical protein
3744	 65.24	0	3954749..3956152	-	467	37523313	ictB	gvip507	-	hypothetical protein
3745	 61.97	0	3956164..3957546	+	460	37523314	-	glr3745	-	formate acetyltransferase
3746	 69.39	+1	3957552..3958691	+	379	37523315	anmK	glr3746	-	anhydro-N-acetylmuramic acid kinase
3747	 62.76	0	3958717..3959304	+	195	37523316	-	glr3747	-	ribonuclease D
3748	 71.61	+2	3959301..3960818	+	505	37523317	-	glr3748	-	thermosome-like protein
3749	 66.15	0	3960878..3961267	+	129	37523318	-	glr3749	-	hypothetical protein
3750	 64.80	0	3961268..3961642	-	124	37523319	-	gll3750	-	hypothetical protein
3751	 61.81	0	3961645..3961932	-	95	37523320	-	gsl3751	-	hypothetical protein
3752	 62.82	0	3961923..3963041	-	372	37523321	-	gll3752	-	oxidoreductase
3753	 66.67	0	3963099..3963647	-	182	37523322	-	gll3753	-	4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein
3754	 70.08	+1	3963677..3964057	-	126	37523323	-	gll3754	-	hypothetical protein
3755	 63.65	0	3964224..3964919	+	231	37523324	-	glr3755	-	hypothetical protein
3756	 60.09	0	3964942..3965367	+	141	37523325	-	glr3756	-	hypothetical protein
3757	 65.02	0	3965895..3967166	+	423	37523326	-	glr3757	-	glucosyltransferase
3758	 63.28	0	3967485..3968399	-	304	37523327	-	gll3758	-	LysR family transcriptional regulator
3759	 62.89	0	3968496..3969368	+	290	37523328	-	glr3759	-	3-hydroxyisobutyrate dehydrogenase
3760	 56.79	-1	3969400..3969642	-	80	37523329	-	gsl3760	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.