IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3611	 63.17	0	3807046..3808017	-	323	37523180	-	gll3611	-	phosphate starvation-inducible protein PhoH-like protein
3612	 66.51	0	3808044..3808685	-	213	37523181	rnhA	gvip491	-	ribonuclease H
3613	 62.28	0	3808790..3809587	+	265	37523182	-	glr3613	-	hypothetical protein
3614	 49.48	-2	3810500..3810790	-	96	37523183	-	gsl3614	-	hypothetical protein
3615	 62.55	0	3810763..3811005	-	80	37523184	-	gsl3615	-	hypothetical protein
3616	 64.76	0	3811191..3812921	-	576	37523185	-	gll3616	-	hypothetical protein
3617	 67.41	+1	3812952..3814292	-	446	37523186	-	gll3617	-	hypothetical protein
3618	 66.59	0	3814312..3815619	+	435	37523187	-	glr3618	-	hypothetical protein
3619	 63.30	0	3815623..3818892	-	1089	37523188	-	gll3619	-	cation efflux system membrane protein CzcA-like protein
3620	 68.13	+1	3819190..3819873	-	227	37523189	-	gll3620	-	hypothetical protein
3621	 63.27	0	3819947..3820564	-	205	37523190	-	gll3621	-	hypothetical protein
3622	 65.58	0	3820687..3821877	-	396	37523191	ispG	gll3622	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
3623	 57.14	-1	3822032..3822325	+	97	37523192	petF	gvip492	-	ferredoxin
3624	 67.56	+1	3822381..3822716	-	111	37523193	-	gll3624	-	hypothetical protein
3625	 57.83	0	3822719..3823759	-	346	37523194	ycf59	gvip493	-	magnesium-protoporphyrin IX monomethyl ester cyclase
3626	 63.84	0	3823783..3824526	+	247	37523195	-	glr3626	-	hypothetical protein
3627	 57.66	0	3824523..3825488	-	321	37523196	-	gll3627	-	hypothetical protein
3628	 60.52	0	3825718..3826677	-	319	37523197	-	gll3628	-	hypothetical protein
3629	 60.45	0	3826900..3827913	-	337	37523198	-	gll3629	-	hypothetical protein
3630	 67.46	+1	3828107..3828991	-	294	37523199	-	gll3630	-	sugar kinase
3631	 66.41	0	3828993..3829385	-	130	37523200	-	gll3631	-	hypothetical protein
3632	 61.44	0	3829429..3831378	-	649	37523201	-	gll3632	-	hypothetical protein
3633	 65.87	0	3831453..3831830	+	125	37523202	-	glr3633	-	hypothetical protein
3634	 62.39	0	3831880..3831996	-	38	37523203	psbI	gvip494	-	photosystem II protein
3635	 64.10	0	3832039..3832935	-	298	37523204	-	gll3635	-	oxidoreductase
3636	 57.86	0	3832973..3833608	-	211	37523205	-	gll3636	-	TetR family transcriptional regulatory protein
3637	 67.68	+1	3833787..3836159	+	790	37523206	-	glr3637	-	recombination and DNA strand exchange inhibitor protein
3638	 63.90	0	3836204..3836890	+	228	37523207	-	glr3638	-	hypothetical protein
3639	 61.68	0	3837021..3837521	-	166	37523208	-	gll3639	-	hypothetical protein
3640	 65.00	0	3837712..3838311	+	199	37523209	-	glr3640	-	hypothetical protein
3641	 64.69	0	3838315..3839124	-	269	37523210	-	gll3641	-	hypothetical protein
3642	 66.29	0	3839103..3841244	-	713	37523211	-	gll3642	-	hypothetical protein
3643	 56.76	-1	3841539..3842699	+	386	37523212	-	glr3643	-	hypothetical protein
3644	 58.33	0	3842704..3842895	-	63	37523213	-	gsl3644	-	hypothetical protein
3645	 63.39	0	3842896..3843720	-	274	37523214	-	gll3645	-	inositol monophosphatase family protein
3646	 60.08	0	3844078..3845520	+	480	37523215	-	glr3646	-	neopullulanase
3647	 65.46	0	3845530..3848253	-	907	37523216	-	gll3647	-	hypothetical protein
3648	 59.67	0	3848601..3849029	-	142	37523217	-	gll3648	-	hypothetical protein
3649	 58.07	0	3849026..3849688	-	220	37523218	-	gll3649	-	hypothetical protein
3650	 66.67	0	3849695..3850618	-	307	37523219	-	gll3650	-	glycosyltransferase
3651	 63.89	0	3850620..3853571	-	983	37523220	ileS	gvip495	-	isoleucyl-tRNA synthetase
3652	 67.70	+1	3853814..3854590	+	258	37523221	-	glr3652	-	hypothetical protein
3653	 63.48	0	3854572..3855135	+	187	37523222	-	glr3653	-	hypothetical protein
3654	 58.24	0	3855172..3855444	+	90	37523223	-	gsr3654	-	hypothetical protein
3655	 58.22	0	3855475..3855687	-	70	37523224	-	gsl3655	-	hypothetical protein
3656	 58.99	0	3855974..3856429	-	151	37523225	-	gll3656	-	hypothetical protein
3657	 58.81	0	3856665..3857402	-	245	37523226	-	gll3657	-	MerR family transcriptional regulator
3658	 61.71	0	3857812..3859224	+	470	37523227	-	glr3658	-	hypothetical protein
3659	 67.59	+1	3859273..3861879	-	868	37523228	-	gll3659	-	hypothetical protein
3660	 69.15	+1	3861919..3862803	-	294	37523229	-	gll3660	-	hypothetical protein
3661	 69.10	+1	3862814..3867862	-	1682	37523230	-	gll3661	-	WD-40 repeat-containing protein
3662	 58.64	0	3867990..3868400	-	136	37523231	-	gll3662	-	hypothetical protein
3663	 67.99	+1	3868563..3869771	-	402	37523232	-	gll3663	-	hypothetical protein
3664	 64.37	0	3869789..3871051	-	420	37523233	-	gll3664	-	hypothetical protein
3665	 67.63	+1	3871256..3871981	-	241	37523234	-	gll3665	-	hypothetical protein
3666	 61.20	0	3872134..3872517	+	127	37523235	-	glr3666	-	hypothetical protein
3667	 67.43	+1	3872517..3873434	+	305	37523236	glpD	gvip496	-	NAD+ dependent glycerol-3-phosphate dehydrogenase
3668	 52.70	-1	3873461..3873682	+	73	37523237	-	gsr3668	-	hypothetical protein
3669	 65.62	0	3873914..3875245	+	443	37523238	pyrC	gvip497	-	dihydroorotase
3670	 60.78	0	3875220..3875678	-	152	37523239	-	gll3670	-	hypothetical protein
3671	 54.67	-1	3875723..3876022	+	99	37523240	-	gsr3671	-	hypothetical protein
3672	 62.64	0	3876063..3877799	-	578	37523241	-	gll3672	-	HlyB/MsbA family ABC transporter
3673	 65.46	0	3877867..3879027	+	386	37523242	-	glr3673	-	hypothetical protein
3674	 63.95	0	3879208..3880092	+	294	37523243	-	glr3674	-	hypothetical protein
3675	 63.97	0	3880658..3882214	+	518	37523244	-	glr3675	-	two-component sensor histidine kinase
3676	 67.64	+1	3882230..3882949	-	239	37523245	-	gll3676	-	hypothetical protein
3677	 66.67	0	3883181..3884230	-	349	37523246	-	gll3677	-	hypothetical protein
3678	 67.88	+1	3884199..3885935	+	578	37523247	-	glr3678	-	hypothetical protein
3679	 67.06	+1	3885995..3886753	+	252	37523248	-	glr3679	-	hypothetical protein
3680	 59.90	0	3887007..3889238	-	743	37523249	-	gll3680	-	hypothetical protein
3681	 62.18	0	3889446..3889757	-	103	37523250	-	gll3681	-	hypothetical protein
3682	 63.28	0	3889817..3890791	-	324	37523251	gshB	gvip498	-	glutathione synthetase
3683	 57.58	0	3890788..3891051	-	87	37523252	-	gsl3683	-	glutaredoxin
3684	 67.19	+1	3891170..3891937	+	255	37523253	-	glr3684	-	hydrolase, CbbY protein
3685	 68.95	+1	3891942..3892817	-	291	37523254	-	gll3685	-	hypothetical protein
3686	 64.63	0	3892777..3894246	+	489	37523255	-	glr3686	-	peptidase
3687	 68.78	+1	3894243..3895709	+	488	37523256	-	glr3687	-	peptidase
3688	 62.67	0	3895782..3896807	-	341	37523257	-	gll3688	-	hypothetical protein
3689	 64.39	0	3896971..3898419	-	482	37523258	-	gll3689	-	lignostilbene-alpha,beta-dioxygenase
3690	 68.49	+1	3898481..3899359	-	292	37523259	truB	gll3690	-	tRNA pseudouridine synthase B
3691	 63.45	0	3899564..3900340	+	258	37523260	psbO	gvip499	-	photosystem II manganese-stabilizing polypeptide
3692	 66.46	0	3900464..3901453	+	329	37523261	-	glr3692	-	3-oxoacyl-(acyl carrier protein) synthase III
3693	 63.83	0	3901535..3903862	+	775	37523262	-	glr3693	-	hypothetical protein
3694	 59.78	0	3904092..3905543	-	483	37523263	-	gll3694	-	hypothetical protein
3695	 67.11	+1	3905624..3906982	+	452	37523264	cobB	gvip500	-	cobyrinic acid a,c-diamide synthase
3696	 67.82	+1	3907038..3907733	+	231	37523265	-	glr3696	-	hypothetical protein
3697	 64.73	0	3907872..3908336	+	154	37523266	-	glr3697	-	hypothetical protein
3698	 57.02	-1	3908442..3908669	+	75	37523267	-	gsr3698	-	hypothetical protein
3699	 64.24	0	3908736..3908900	-	54	37523268	-	gsl3699	-	hypothetical protein
3700	 57.47	0	3908907..3908993	-	28	37523269	petN	gvip501	-	cytochrome b6-f complex subunit VIII
3701	 58.62	0	3909169..3909603	+	144	37523270	psaD	gvip502	-	photosystem I reaction centre subunit II
3702	 59.71	0	3909640..3910200	-	186	37523271	rfbC	gvip503	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3703	 63.62	0	3910305..3911288	-	327	37523272	-	gll3703	-	mannose-1-phosphate guanyltransferase
3704	 65.25	0	3911378..3912577	-	399	37523273	-	gll3704	-	hypothetical protein
3705	 61.91	0	3912671..3915277	-	868	37523274	-	gll3705	-	hypothetical protein
3706	 63.37	0	3915521..3917494	-	657	37523275	-	gll3706	-	hypothetical protein
3707	 60.34	0	3917621..3918727	-	368	37523276	-	gll3707	-	hypothetical protein
3708	 56.67	-1	3918764..3919603	-	279	37523277	-	gll3708	-	UDP-N-acetylenolpyruvoylglucosamine reductase
3709	 63.81	0	3919631..3921100	-	489	37523278	-	gll3709	-	hypothetical protein
3710	 62.98	0	3921097..3922155	-	352	37523279	-	gll3710	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.