IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3564	 53.07	-1	3759510..3759737	+	75	37523133	-	gsr3564	-	hypothetical protein
3565	 57.46	0	3759839..3760153	+	104	37523134	-	glr3565	-	hypothetical protein
3566	 62.78	0	3760159..3760338	-	59	37523135	-	gsl3566	-	hypothetical protein
3567	 64.70	0	3760566..3761276	+	236	37523136	-	glr3567	-	hypothetical protein
3568	 59.26	0	3761884..3762261	-	125	37523137	-	gll3568	-	hypothetical protein
3569	 65.36	0	3762239..3763153	-	304	37523138	-	gll3569	-	tRNA-pseudouridine synthase A
3570	 68.38	+1	3763153..3763503	-	116	37523139	rplQ	gvip480	-	50S ribosomal protein L17
3571	 62.43	0	3763506..3764450	-	314	37523140	rpoA	gvip481	-	DNA-directed RNA polymerase subunit alpha
3572	 63.12	0	3764468..3765088	-	206	37523141	rpsD	gvip482	-	30S ribosomal protein S4
3573	 65.39	0	3765120..3765512	-	130	37523142	rps11	gvip483	-	30S ribosomal protein S11
3574	 61.72	0	3765535..3765918	-	127	37523143	rpsM	gvip484	-	30S ribosomal protein S13
3575	 59.65	0	3765956..3766069	-	37	37523144	rpl36	gvip485	-	50S ribosomal protein L36
3576	 66.67	0	3766134..3767714	-	526	37523145	-	gll3576	-	hypothetical protein
3577	 61.36	0	3767764..3770382	-	872	37523146	clpB	gvip486	-	endopeptidase Clp ATP-binding chain B
3578	 60.12	0	3770566..3770886	+	106	37523147	-	glr3578	-	hypothetical protein
3579	 60.53	0	3771105..3771935	+	276	37523148	-	glr3579	-	hypothetical protein
3580	 46.79	-2	3772034..3772189	-	51	37523149	-	gsl3580	-	hypothetical protein
3581	 65.59	0	3772455..3773750	-	431	37523150	ftsW	gvip487	-	cell division protein
3582	 63.21	0	3773815..3775521	-	568	37523151	-	gll3582	-	hypothetical protein
3583	 59.38	0	3775671..3776123	+	150	37523152	-	glr3583	-	hypothetical protein
3584	 64.01	0	3776188..3776751	+	187	37523153	-	glr3584	-	RNA polymerase sigma factor
3585	 65.23	0	3776721..3777068	+	115	37523154	-	glr3585	-	hypothetical protein
3586	 72.84	+2	3777331..3777492	+	53	37523155	-	gsr3586	-	hypothetical protein
3587	 69.41	+1	3777519..3778577	+	352	37523156	queA	glr3587	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
3588	 59.48	0	3778682..3780643	+	653	37523157	-	glr3588	-	hypothetical protein
3589	 62.84	0	3780659..3783634	+	991	37523158	-	glr3589	-	hypothetical protein
3590	 60.27	0	3783846..3784142	-	98	37523159	-	gsl3590	-	hypothetical protein
3591	 62.50	0	3784299..3784970	+	223	37523160	-	glr3591	-	hypothetical protein
3592	 64.18	0	3784913..3786799	-	628	37523161	uvrC	gvip488	-	excinuclease ABC subunit C
3593	 61.35	0	3786807..3787220	-	137	37523162	-	gll3593	-	hypothetical protein
3594	 61.84	0	3787296..3788000	-	234	37523163	-	gll3594	-	hypothetical protein
3595	 63.64	0	3788058..3788915	-	285	37523164	-	gll3595	-	hypothetical protein
3596	 60.69	0	3789014..3789682	-	222	37523165	-	gll3596	-	MarR family transcriptional regulator
3597	 60.83	0	3789964..3790614	-	216	37523166	-	gll3597	-	hypothetical protein
3598	 64.28	0	3790648..3792657	-	669	37523167	-	gll3598	-	hypothetical protein
3599	 64.41	0	3793046..3794728	+	560	37523168	-	glr3599	-	hypothetical protein
3600	 49.33	-2	3794851..3795075	+	74	37523169	-	gsr3600	-	hypothetical protein
3601	 63.21	0	3795077..3797302	-	741	37523170	-	gll3601	-	hypothetical protein
3602	 67.44	+1	3797311..3798090	-	259	37523171	-	gll3602	-	ABC transporter ATP-binding protein
3603	 65.99	0	3798239..3799711	+	490	37523172	-	glr3603	-	tRNA (uracil-5-)-methyltransferase Gid
3604	 62.77	0	3799711..3800352	+	213	37523173	ribC	gvip489	-	riboflavin synthase subunit alpha
3605	 60.63	0	3800617..3801030	+	137	37523174	-	glr3605	-	hypothetical protein
3606	 63.91	0	3801041..3801511	-	156	37523175	-	gll3606	-	hypothetical protein
3607	 59.58	0	3801535..3803961	-	808	37523176	spsA	gvip490	-	sucrose phosphate synthase
3608	 65.99	0	3804062..3804949	+	295	37523177	-	glr3608	-	hypothetical protein
3609	 65.17	0	3805009..3806616	+	535	37523178	-	glr3609	-	AraC family transcription regulator
3610	 67.47	+1	3806667..3807041	+	124	37523179	-	glr3610	-	methylated-DNA--protein-cysteine S-methyltransferase
3611	 63.17	0	3807046..3808017	-	323	37523180	-	gll3611	-	phosphate starvation-inducible protein PhoH-like protein
3612	 66.51	0	3808044..3808685	-	213	37523181	rnhA	gvip491	-	ribonuclease H
3613	 62.28	0	3808790..3809587	+	265	37523182	-	glr3613	-	hypothetical protein
3614	 49.48	-2	3810500..3810790	-	96	37523183	-	gsl3614	-	hypothetical protein
3615	 62.55	0	3810763..3811005	-	80	37523184	-	gsl3615	-	hypothetical protein
3616	 64.76	0	3811191..3812921	-	576	37523185	-	gll3616	-	hypothetical protein
3617	 67.41	+1	3812952..3814292	-	446	37523186	-	gll3617	-	hypothetical protein
3618	 66.59	0	3814312..3815619	+	435	37523187	-	glr3618	-	hypothetical protein
3619	 63.30	0	3815623..3818892	-	1089	37523188	-	gll3619	-	cation efflux system membrane protein CzcA-like protein
3620	 68.13	+1	3819190..3819873	-	227	37523189	-	gll3620	-	hypothetical protein
3621	 63.27	0	3819947..3820564	-	205	37523190	-	gll3621	-	hypothetical protein
3622	 65.58	0	3820687..3821877	-	396	37523191	ispG	gll3622	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
3623	 57.14	-1	3822032..3822325	+	97	37523192	petF	gvip492	-	ferredoxin
3624	 67.56	+1	3822381..3822716	-	111	37523193	-	gll3624	-	hypothetical protein
3625	 57.83	0	3822719..3823759	-	346	37523194	ycf59	gvip493	-	magnesium-protoporphyrin IX monomethyl ester cyclase
3626	 63.84	0	3823783..3824526	+	247	37523195	-	glr3626	-	hypothetical protein
3627	 57.66	0	3824523..3825488	-	321	37523196	-	gll3627	-	hypothetical protein
3628	 60.52	0	3825718..3826677	-	319	37523197	-	gll3628	-	hypothetical protein
3629	 60.45	0	3826900..3827913	-	337	37523198	-	gll3629	-	hypothetical protein
3630	 67.46	+1	3828107..3828991	-	294	37523199	-	gll3630	-	sugar kinase
3631	 66.41	0	3828993..3829385	-	130	37523200	-	gll3631	-	hypothetical protein
3632	 61.44	0	3829429..3831378	-	649	37523201	-	gll3632	-	hypothetical protein
3633	 65.87	0	3831453..3831830	+	125	37523202	-	glr3633	-	hypothetical protein
3634	 62.39	0	3831880..3831996	-	38	37523203	psbI	gvip494	-	photosystem II protein
3635	 64.10	0	3832039..3832935	-	298	37523204	-	gll3635	-	oxidoreductase
3636	 57.86	0	3832973..3833608	-	211	37523205	-	gll3636	-	TetR family transcriptional regulatory protein
3637	 67.68	+1	3833787..3836159	+	790	37523206	-	glr3637	-	recombination and DNA strand exchange inhibitor protein
3638	 63.90	0	3836204..3836890	+	228	37523207	-	glr3638	-	hypothetical protein
3639	 61.68	0	3837021..3837521	-	166	37523208	-	gll3639	-	hypothetical protein
3640	 65.00	0	3837712..3838311	+	199	37523209	-	glr3640	-	hypothetical protein
3641	 64.69	0	3838315..3839124	-	269	37523210	-	gll3641	-	hypothetical protein
3642	 66.29	0	3839103..3841244	-	713	37523211	-	gll3642	-	hypothetical protein
3643	 56.76	-1	3841539..3842699	+	386	37523212	-	glr3643	-	hypothetical protein
3644	 58.33	0	3842704..3842895	-	63	37523213	-	gsl3644	-	hypothetical protein
3645	 63.39	0	3842896..3843720	-	274	37523214	-	gll3645	-	inositol monophosphatase family protein
3646	 60.08	0	3844078..3845520	+	480	37523215	-	glr3646	-	neopullulanase
3647	 65.46	0	3845530..3848253	-	907	37523216	-	gll3647	-	hypothetical protein
3648	 59.67	0	3848601..3849029	-	142	37523217	-	gll3648	-	hypothetical protein
3649	 58.07	0	3849026..3849688	-	220	37523218	-	gll3649	-	hypothetical protein
3650	 66.67	0	3849695..3850618	-	307	37523219	-	gll3650	-	glycosyltransferase
3651	 63.89	0	3850620..3853571	-	983	37523220	ileS	gvip495	-	isoleucyl-tRNA synthetase
3652	 67.70	+1	3853814..3854590	+	258	37523221	-	glr3652	-	hypothetical protein
3653	 63.48	0	3854572..3855135	+	187	37523222	-	glr3653	-	hypothetical protein
3654	 58.24	0	3855172..3855444	+	90	37523223	-	gsr3654	-	hypothetical protein
3655	 58.22	0	3855475..3855687	-	70	37523224	-	gsl3655	-	hypothetical protein
3656	 58.99	0	3855974..3856429	-	151	37523225	-	gll3656	-	hypothetical protein
3657	 58.81	0	3856665..3857402	-	245	37523226	-	gll3657	-	MerR family transcriptional regulator
3658	 61.71	0	3857812..3859224	+	470	37523227	-	glr3658	-	hypothetical protein
3659	 67.59	+1	3859273..3861879	-	868	37523228	-	gll3659	-	hypothetical protein
3660	 69.15	+1	3861919..3862803	-	294	37523229	-	gll3660	-	hypothetical protein
3661	 69.10	+1	3862814..3867862	-	1682	37523230	-	gll3661	-	WD-40 repeat-containing protein
3662	 58.64	0	3867990..3868400	-	136	37523231	-	gll3662	-	hypothetical protein
3663	 67.99	+1	3868563..3869771	-	402	37523232	-	gll3663	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.