IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3483	 65.91	0	3693183..3694511	-	442	37523052	-	gll3483	-	hypothetical protein
3484	 66.81	0	3694796..3695482	-	228	37523053	-	gll3484	-	hypothetical protein
3485	 63.45	0	3695815..3696747	+	310	37523054	-	glr3485	-	hypothetical protein
3486	 62.94	0	3696818..3697300	-	160	37523055	-	gll3486	-	hypothetical protein
3487	 67.88	+1	3697533..3698936	-	467	37523056	-	gll3487	-	lysine decarboxylase
3488	 62.48	0	3698955..3699503	+	182	37523057	-	glr3488	-	hypothetical protein
3489	 62.93	0	3699537..3700688	+	383	37523058	-	glr3489	-	transcription elongation factor NusA
3490	 56.92	-1	3700721..3700915	-	64	37523059	-	gsl3490	-	hypothetical protein
3491	 48.56	-2	3701013..3701774	-	253	37523060	-	gll3491	-	hypothetical protein
3492	 65.51	0	3701841..3703310	-	489	37523061	murE	gvip474	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3493	 63.62	0	3703360..3703884	-	174	37523062	-	gll3493	-	hypothetical protein
3494	 60.47	0	3703943..3704200	-	85	37523063	-	gsl3494	-	hypothetical protein
3495	 64.52	0	3704206..3706023	-	605	37523064	-	gll3495	-	pyruvate kinase
3496	 59.70	0	3706075..3706548	-	157	37523065	-	gll3496	-	hypothetical protein
3497	 66.28	0	3706711..3707226	+	171	37523066	-	glr3497	-	hypothetical protein
3498	 61.01	0	3707293..3707628	+	111	37523067	-	glr3498	-	hypothetical protein
3499	 63.64	0	3707697..3708290	+	197	37523068	recR	gvip475	-	recombination protein
3500	 51.23	-2	3708287..3708448	-	53	37523069	-	gsl3500	-	hypothetical protein
3501	 60.31	0	3708512..3708904	-	130	37523070	-	gll3501	-	hypothetical protein
3502	 66.03	0	3709049..3709672	+	207	37523071	-	glr3502	-	hypothetical protein
3503	 66.91	+1	3709687..3710907	+	406	37523072	-	glr3503	-	NADH dehydrogenase
3504	 59.93	0	3711224..3711490	+	88	37523073	-	gsr3504	-	hypothetical protein
3505	 62.33	0	3711494..3711793	+	99	37523074	-	gsr3505	-	hypothetical protein
3506	 66.53	0	3711984..3712730	+	248	37523075	-	glr3506	-	3-oxoacyl-[acyl-carrier protein] reductase
3507	 66.67	0	3712737..3713363	-	208	37523076	-	gll3507	-	hypothetical protein
3508	 67.69	+1	3713339..3714409	+	356	37523077	-	glr3508	-	hypothetical protein
3509	 67.10	+1	3714390..3715079	-	229	37523078	bioD	gvip476	-	dithiobiotin synthetase
3510	 63.73	0	3715079..3715690	-	203	37523079	dcd	gll3510	-	deoxycytidine triphosphate deaminase
3511	 61.88	0	3715718..3716260	-	180	37523080	-	gll3511	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
3512	 60.33	0	3716388..3716813	+	141	37523081	dnaJ	gvip477	-	chaperone protein
3513	 62.85	0	3716839..3717126	+	95	37523082	-	gsr3513	-	hypothetical protein
3514	 64.78	0	3717332..3718336	+	334	37523083	-	glr3514	-	hypothetical protein
3515	 66.54	0	3718273..3719091	-	272	37523084	-	gll3515	-	hypothetical protein
3516	 56.72	-1	3719201..3720115	-	304	37523085	-	gll3516	-	hypothetical protein
3517	 67.87	+1	3720256..3721581	+	441	37523086	-	glr3517	-	hypothetical protein
3518	 71.28	+1	3721592..3722719	+	375	37523087	-	glr3518	-	hypothetical protein
3519	 69.67	+1	3722675..3723673	-	332	161702941	-	gll3519	-	putative lipid kinase
3520	 58.86	0	3723745..3724218	-	157	37523089	-	gll3520	-	hypothetical protein
3521	 58.30	0	3724549..3725325	-	258	37523090	-	gll3521	-	hypothetical protein
3522	 57.91	0	3725334..3725630	-	98	37523091	-	gsl3522	-	hypothetical protein
3523	 41.75	-2	3725697..3725981	-	94	37523092	-	gsl3523	-	hypothetical protein
3524	 55.02	-1	3725978..3726286	-	102	37523093	-	gll3524	-	hypothetical protein
3525	 65.59	0	3726339..3727268	-	309	37523094	ppnK	gll3525	-	inorganic polyphosphate/ATP-NAD kinase
3526	 66.44	0	3727270..3728139	-	289	37523095	-	gll3526	-	lipoyl synthase
3527	 54.32	-1	3728291..3728533	+	80	37523096	-	gsr3527	-	hypothetical protein
3528	 57.51	0	3728530..3728802	+	90	37523097	-	gsr3528	-	hypothetical protein
3529	 65.48	0	3729160..3729495	-	111	37523098	-	gll3529	-	hypothetical protein
3530	 65.13	0	3729583..3730686	+	367	37523099	-	glr3530	-	glycine cleavage system protein T
3531	 60.77	0	3730724..3731113	+	129	37523100	-	glr3531	-	glycine cleavage system protein H
3532	 61.02	0	3731119..3731490	+	123	37523101	-	glr3532	-	hypothetical protein
3533	 61.72	0	3731500..3731802	-	100	37523102	-	gll3533	-	hypothetical protein
3534	 66.09	0	3732383..3733081	+	232	37523103	-	glr3534	-	riboflavin-specific deaminase
3535	 66.67	0	3733072..3733581	+	169	37523104	-	glr3535	-	hypothetical protein
3536	 66.03	0	3733622..3736141	+	839	37523105	-	glr3536	-	hypothetical protein
3537	 66.31	0	3736144..3736986	-	280	37523106	-	gll3537	-	hypothetical protein
3538	 62.85	0	3737025..3737705	-	226	37523107	-	gll3538	-	deoxyribose-phosphate aldolase
3539	 66.03	0	3737797..3738108	+	103	37523108	-	glr3539	-	hypothetical protein
3540	 59.03	0	3738134..3738421	+	95	37523109	ycf19	gvip478	-	hypothetical protein
3541	 62.46	0	3738453..3740189	+	578	37523110	-	glr3541	-	hypothetical protein
3542	 66.36	0	3740186..3741496	-	436	37523111	-	gll3542	-	hypothetical protein
3543	 65.11	0	3741744..3742898	-	384	37523112	-	gll3543	-	carbamoyl phosphate synthase small subunit
3544	 64.14	0	3742956..3743192	-	78	37523113	-	gsl3544	-	hypothetical protein
3545	 70.44	+1	3743253..3743570	-	105	37523114	-	gll3545	-	DNA binding protein HU
3546	 65.73	0	3743686..3744540	+	284	37523115	-	glr3546	-	hydrolase
3547	 66.06	0	3744521..3745012	+	163	37523116	-	glr3547	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3548	 62.82	0	3745020..3745721	-	233	37523117	-	gll3548	-	ribulose-phosphate 3-epimerase
3549	 64.69	0	3745833..3746186	+	117	37523118	-	glr3549	-	hypothetical protein
3550	 65.73	0	3746193..3746618	-	141	37523119	-	gll3550	-	hypothetical protein
3551	 67.13	+1	3746812..3747900	-	362	37523120	leuB	gvip479	-	3-isopropylmalate dehydrogenase
3552	 60.53	0	3747962..3748303	-	113	37523121	-	gll3552	-	hypothetical protein
3553	 64.71	0	3748319..3748573	-	84	37523122	-	gsl3553	-	hypothetical protein
3554	 64.71	0	3748706..3749572	+	288	37523123	-	glr3554	-	hypothetical protein
3555	 54.26	-1	3749784..3750170	-	128	37523124	-	gll3555	-	hypothetical protein
3556	 55.00	-1	3750170..3750409	-	79	37523125	-	gsl3556	-	hypothetical protein
3557	 63.21	0	3750490..3751155	-	221	37523126	-	gll3557	-	hypothetical protein
3558	 62.57	0	3751313..3751678	+	121	37523127	-	glr3558	-	hypothetical protein
3559	 59.77	0	3752059..3752406	+	115	37523128	-	glr3559	-	hypothetical protein
3560	 68.26	+1	3752501..3753376	+	291	37523129	-	glr3560	-	hypothetical protein
3561	 60.23	0	3753802..3754236	-	144	37523130	-	gll3561	-	lactoylglutathione lyase
3562	 61.28	0	3754571..3758248	+	1225	37523131	-	glr3562	-	two-component sensor histidine kinase
3563	 63.79	0	3758241..3759215	+	324	37523132	-	glr3563	-	two-component response regulator
3564	 53.07	-1	3759510..3759737	+	75	37523133	-	gsr3564	-	hypothetical protein
3565	 57.46	0	3759839..3760153	+	104	37523134	-	glr3565	-	hypothetical protein
3566	 62.78	0	3760159..3760338	-	59	37523135	-	gsl3566	-	hypothetical protein
3567	 64.70	0	3760566..3761276	+	236	37523136	-	glr3567	-	hypothetical protein
3568	 59.26	0	3761884..3762261	-	125	37523137	-	gll3568	-	hypothetical protein
3569	 65.36	0	3762239..3763153	-	304	37523138	-	gll3569	-	tRNA-pseudouridine synthase A
3570	 68.38	+1	3763153..3763503	-	116	37523139	rplQ	gvip480	-	50S ribosomal protein L17
3571	 62.43	0	3763506..3764450	-	314	37523140	rpoA	gvip481	-	DNA-directed RNA polymerase subunit alpha
3572	 63.12	0	3764468..3765088	-	206	37523141	rpsD	gvip482	-	30S ribosomal protein S4
3573	 65.39	0	3765120..3765512	-	130	37523142	rps11	gvip483	-	30S ribosomal protein S11
3574	 61.72	0	3765535..3765918	-	127	37523143	rpsM	gvip484	-	30S ribosomal protein S13
3575	 59.65	0	3765956..3766069	-	37	37523144	rpl36	gvip485	-	50S ribosomal protein L36
3576	 66.67	0	3766134..3767714	-	526	37523145	-	gll3576	-	hypothetical protein
3577	 61.36	0	3767764..3770382	-	872	37523146	clpB	gvip486	-	endopeptidase Clp ATP-binding chain B
3578	 60.12	0	3770566..3770886	+	106	37523147	-	glr3578	-	hypothetical protein
3579	 60.53	0	3771105..3771935	+	276	37523148	-	glr3579	-	hypothetical protein
3580	 46.79	-2	3772034..3772189	-	51	37523149	-	gsl3580	-	hypothetical protein
3581	 65.59	0	3772455..3773750	-	431	37523150	ftsW	gvip487	-	cell division protein
3582	 63.21	0	3773815..3775521	-	568	37523151	-	gll3582	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.