IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3466	 60.37	0	3675470..3675850	-	126	37523035	-	gll3466	-	hypothetical protein
3467	 59.09	0	3676002..3676529	-	175	37523036	-	gll3467	-	hypothetical protein
3468	 65.73	0	3676775..3677950	+	391	37523037	-	glr3468	-	succinyldiaminopimelate transaminase
3469	 62.70	0	3678295..3678975	-	226	37523038	-	gll3469	-	hypothetical protein
3470	 65.48	0	3678972..3680492	-	506	37523039	-	gll3470	-	hypothetical protein
3471	 68.52	+1	3680528..3681121	-	197	37523040	-	gll3471	-	hypothetical protein
3472	 66.67	0	3681230..3682171	+	313	37523041	-	glr3472	-	ABC transporter ATP-binding protein
3473	 65.02	0	3682168..3683379	+	403	37523042	-	glr3473	-	hypothetical protein
3474	 59.03	0	3683450..3683737	+	95	37523043	-	gsr3474	-	hypothetical protein
3475	 55.74	-1	3683746..3684276	+	176	37523044	-	glr3475	-	hypothetical protein
3476	 56.99	-1	3684594..3684779	-	61	37523045	-	gsl3476	-	hypothetical protein
3477	 67.43	+1	3684799..3685719	-	306	37523046	-	gll3477	-	hypothetical protein
3478	 64.69	0	3685878..3686483	+	201	37523047	-	glr3478	-	hypothetical protein
3479	 63.11	0	3686490..3687812	-	440	37523048	-	gll3479	-	hypothetical protein
3480	 65.71	0	3687900..3688841	+	313	37523049	rfbM	gvip473	-	mannose-1-phosphate guanylyltransferase
3481	 67.52	+1	3689237..3691117	+	626	37523050	-	glr3481	-	hypothetical protein
3482	 67.56	+1	3691305..3693200	+	631	37523051	-	glr3482	-	aminopeptidase
3483	 65.91	0	3693183..3694511	-	442	37523052	-	gll3483	-	hypothetical protein
3484	 66.81	0	3694796..3695482	-	228	37523053	-	gll3484	-	hypothetical protein
3485	 63.45	0	3695815..3696747	+	310	37523054	-	glr3485	-	hypothetical protein
3486	 62.94	0	3696818..3697300	-	160	37523055	-	gll3486	-	hypothetical protein
3487	 67.88	+1	3697533..3698936	-	467	37523056	-	gll3487	-	lysine decarboxylase
3488	 62.48	0	3698955..3699503	+	182	37523057	-	glr3488	-	hypothetical protein
3489	 62.93	0	3699537..3700688	+	383	37523058	-	glr3489	-	transcription elongation factor NusA
3490	 56.92	-1	3700721..3700915	-	64	37523059	-	gsl3490	-	hypothetical protein
3491	 48.56	-2	3701013..3701774	-	253	37523060	-	gll3491	-	hypothetical protein
3492	 65.51	0	3701841..3703310	-	489	37523061	murE	gvip474	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3493	 63.62	0	3703360..3703884	-	174	37523062	-	gll3493	-	hypothetical protein
3494	 60.47	0	3703943..3704200	-	85	37523063	-	gsl3494	-	hypothetical protein
3495	 64.52	0	3704206..3706023	-	605	37523064	-	gll3495	-	pyruvate kinase
3496	 59.70	0	3706075..3706548	-	157	37523065	-	gll3496	-	hypothetical protein
3497	 66.28	0	3706711..3707226	+	171	37523066	-	glr3497	-	hypothetical protein
3498	 61.01	0	3707293..3707628	+	111	37523067	-	glr3498	-	hypothetical protein
3499	 63.64	0	3707697..3708290	+	197	37523068	recR	gvip475	-	recombination protein
3500	 51.23	-2	3708287..3708448	-	53	37523069	-	gsl3500	-	hypothetical protein
3501	 60.31	0	3708512..3708904	-	130	37523070	-	gll3501	-	hypothetical protein
3502	 66.03	0	3709049..3709672	+	207	37523071	-	glr3502	-	hypothetical protein
3503	 66.91	+1	3709687..3710907	+	406	37523072	-	glr3503	-	NADH dehydrogenase
3504	 59.93	0	3711224..3711490	+	88	37523073	-	gsr3504	-	hypothetical protein
3505	 62.33	0	3711494..3711793	+	99	37523074	-	gsr3505	-	hypothetical protein
3506	 66.53	0	3711984..3712730	+	248	37523075	-	glr3506	-	3-oxoacyl-[acyl-carrier protein] reductase
3507	 66.67	0	3712737..3713363	-	208	37523076	-	gll3507	-	hypothetical protein
3508	 67.69	+1	3713339..3714409	+	356	37523077	-	glr3508	-	hypothetical protein
3509	 67.10	+1	3714390..3715079	-	229	37523078	bioD	gvip476	-	dithiobiotin synthetase
3510	 63.73	0	3715079..3715690	-	203	37523079	dcd	gll3510	-	deoxycytidine triphosphate deaminase
3511	 61.88	0	3715718..3716260	-	180	37523080	-	gll3511	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
3512	 60.33	0	3716388..3716813	+	141	37523081	dnaJ	gvip477	-	chaperone protein
3513	 62.85	0	3716839..3717126	+	95	37523082	-	gsr3513	-	hypothetical protein
3514	 64.78	0	3717332..3718336	+	334	37523083	-	glr3514	-	hypothetical protein
3515	 66.54	0	3718273..3719091	-	272	37523084	-	gll3515	-	hypothetical protein
3516	 56.72	-1	3719201..3720115	-	304	37523085	-	gll3516	-	hypothetical protein
3517	 67.87	+1	3720256..3721581	+	441	37523086	-	glr3517	-	hypothetical protein
3518	 71.28	+1	3721592..3722719	+	375	37523087	-	glr3518	-	hypothetical protein
3519	 69.67	+1	3722675..3723673	-	332	161702941	-	gll3519	-	putative lipid kinase
3520	 58.86	0	3723745..3724218	-	157	37523089	-	gll3520	-	hypothetical protein
3521	 58.30	0	3724549..3725325	-	258	37523090	-	gll3521	-	hypothetical protein
3522	 57.91	0	3725334..3725630	-	98	37523091	-	gsl3522	-	hypothetical protein
3523	 41.75	-2	3725697..3725981	-	94	37523092	-	gsl3523	-	hypothetical protein
3524	 55.02	-1	3725978..3726286	-	102	37523093	-	gll3524	-	hypothetical protein
3525	 65.59	0	3726339..3727268	-	309	37523094	ppnK	gll3525	-	inorganic polyphosphate/ATP-NAD kinase
3526	 66.44	0	3727270..3728139	-	289	37523095	-	gll3526	-	lipoyl synthase
3527	 54.32	-1	3728291..3728533	+	80	37523096	-	gsr3527	-	hypothetical protein
3528	 57.51	0	3728530..3728802	+	90	37523097	-	gsr3528	-	hypothetical protein
3529	 65.48	0	3729160..3729495	-	111	37523098	-	gll3529	-	hypothetical protein
3530	 65.13	0	3729583..3730686	+	367	37523099	-	glr3530	-	glycine cleavage system protein T
3531	 60.77	0	3730724..3731113	+	129	37523100	-	glr3531	-	glycine cleavage system protein H
3532	 61.02	0	3731119..3731490	+	123	37523101	-	glr3532	-	hypothetical protein
3533	 61.72	0	3731500..3731802	-	100	37523102	-	gll3533	-	hypothetical protein
3534	 66.09	0	3732383..3733081	+	232	37523103	-	glr3534	-	riboflavin-specific deaminase
3535	 66.67	0	3733072..3733581	+	169	37523104	-	glr3535	-	hypothetical protein
3536	 66.03	0	3733622..3736141	+	839	37523105	-	glr3536	-	hypothetical protein
3537	 66.31	0	3736144..3736986	-	280	37523106	-	gll3537	-	hypothetical protein
3538	 62.85	0	3737025..3737705	-	226	37523107	-	gll3538	-	deoxyribose-phosphate aldolase
3539	 66.03	0	3737797..3738108	+	103	37523108	-	glr3539	-	hypothetical protein
3540	 59.03	0	3738134..3738421	+	95	37523109	ycf19	gvip478	-	hypothetical protein
3541	 62.46	0	3738453..3740189	+	578	37523110	-	glr3541	-	hypothetical protein
3542	 66.36	0	3740186..3741496	-	436	37523111	-	gll3542	-	hypothetical protein
3543	 65.11	0	3741744..3742898	-	384	37523112	-	gll3543	-	carbamoyl phosphate synthase small subunit
3544	 64.14	0	3742956..3743192	-	78	37523113	-	gsl3544	-	hypothetical protein
3545	 70.44	+1	3743253..3743570	-	105	37523114	-	gll3545	-	DNA binding protein HU
3546	 65.73	0	3743686..3744540	+	284	37523115	-	glr3546	-	hydrolase
3547	 66.06	0	3744521..3745012	+	163	37523116	-	glr3547	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3548	 62.82	0	3745020..3745721	-	233	37523117	-	gll3548	-	ribulose-phosphate 3-epimerase
3549	 64.69	0	3745833..3746186	+	117	37523118	-	glr3549	-	hypothetical protein
3550	 65.73	0	3746193..3746618	-	141	37523119	-	gll3550	-	hypothetical protein
3551	 67.13	+1	3746812..3747900	-	362	37523120	leuB	gvip479	-	3-isopropylmalate dehydrogenase
3552	 60.53	0	3747962..3748303	-	113	37523121	-	gll3552	-	hypothetical protein
3553	 64.71	0	3748319..3748573	-	84	37523122	-	gsl3553	-	hypothetical protein
3554	 64.71	0	3748706..3749572	+	288	37523123	-	glr3554	-	hypothetical protein
3555	 54.26	-1	3749784..3750170	-	128	37523124	-	gll3555	-	hypothetical protein
3556	 55.00	-1	3750170..3750409	-	79	37523125	-	gsl3556	-	hypothetical protein
3557	 63.21	0	3750490..3751155	-	221	37523126	-	gll3557	-	hypothetical protein
3558	 62.57	0	3751313..3751678	+	121	37523127	-	glr3558	-	hypothetical protein
3559	 59.77	0	3752059..3752406	+	115	37523128	-	glr3559	-	hypothetical protein
3560	 68.26	+1	3752501..3753376	+	291	37523129	-	glr3560	-	hypothetical protein
3561	 60.23	0	3753802..3754236	-	144	37523130	-	gll3561	-	lactoylglutathione lyase
3562	 61.28	0	3754571..3758248	+	1225	37523131	-	glr3562	-	two-component sensor histidine kinase
3563	 63.79	0	3758241..3759215	+	324	37523132	-	glr3563	-	two-component response regulator
3564	 53.07	-1	3759510..3759737	+	75	37523133	-	gsr3564	-	hypothetical protein
3565	 57.46	0	3759839..3760153	+	104	37523134	-	glr3565	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.