IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3432	 64.32	0	3633338..3635038	+	566	37523001	-	glr3432	-	two-component sensor histidine kinase
3433	 60.89	0	3635035..3635484	+	149	37523002	-	glr3433	-	two-component response regulator
3434	 63.13	0	3635481..3637403	+	640	37523003	-	glr3434	-	two-component hybrid sensor and regulator
3435	 64.25	0	3638009..3639127	-	372	37523004	-	gll3435	-	hypothetical protein
3436	 64.60	0	3639232..3642177	+	981	37523005	-	glr3436	-	oxidoreductase
3437	 62.87	0	3642152..3642730	-	192	37523006	-	gll3437	-	hypothetical protein
3438	 62.37	0	3643099..3645450	+	783	37523007	psaA	gvip470	-	photosystem I P700 chlorophyll a apoprotein A1
3439	 62.81	0	3645463..3648081	+	872	37523008	psaB	gvip471	-	photosystem I P700 chlorophyll a apoprotein A2
3440	 68.37	+1	3648141..3649019	-	292	37523009	-	gll3440	-	hypothetical protein
3441	 63.83	0	3649007..3649924	-	305	37523010	-	gll3441	-	hypothetical protein
3442	 62.72	0	3650043..3651029	+	328	37523011	-	glr3442	-	ABC transporter ATP-binding protein
3443	 60.08	0	3651076..3651864	+	262	37523012	-	glr3443	-	hypothetical protein
3444	 68.55	+1	3652125..3652973	+	282	37523013	-	glr3444	-	MerR family transcriptional regulator
3445	 68.56	+1	3652970..3654076	+	368	37523014	-	glr3445	-	hypothetical protein
3446	 67.23	+1	3654492..3655550	+	352	37523015	-	glr3446	-	ribosome-associated GTPase
3447	 62.69	0	3655701..3658088	-	795	37523016	-	gll3447	-	hypothetical protein
3448	 61.03	0	3658141..3658920	+	259	37523017	-	glr3448	-	hypothetical protein
3449	 64.86	0	3658963..3659460	+	165	37523018	-	glr3449	-	hypothetical protein
3450	 66.82	0	3659465..3660118	-	217	37523019	-	gll3450	-	hypothetical protein
3451	 58.89	0	3660159..3660428	-	89	37523020	-	gsl3451	-	hypothetical protein
3452	 62.88	0	3660479..3662275	+	598	37523021	-	glr3452	-	hypothetical protein
3453	 53.43	-1	3662336..3662539	-	67	37523022	-	gsl3453	-	hypothetical protein
3454	 53.63	-1	3662559..3663095	-	178	37523023	-	gll3454	-	hypothetical protein
3455	 51.28	-2	3663179..3663490	+	103	37523024	-	glr3455	-	hypothetical protein
3456	 67.77	+1	3663539..3665347	-	602	37523025	-	gll3456	-	hypothetical protein
3457	 64.43	0	3665350..3667140	-	596	37523026	-	gll3457	-	hypothetical protein
3458	 61.19	0	3667291..3667509	-	72	37523027	-	gsl3458	-	hypothetical protein
3459	 66.95	+1	3667814..3669247	+	477	37523028	-	glr3459	-	hypothetical protein
3460	 61.23	0	3669380..3670483	-	367	37523029	-	gll3460	-	oxidoreductase
3461	 63.27	0	3670688..3670834	-	48	37523030	-	gsl3461	-	hypothetical protein
3462	 54.45	-1	3671026..3671508	-	160	37523031	-	gll3462	-	hypothetical protein
3463	 58.40	0	3671644..3672441	+	265	37523032	-	glr3463	-	hypothetical protein
3464	 62.92	0	3672527..3674449	-	640	37523033	-	gll3464	-	hypothetical protein
3465	 69.55	+1	3674643..3675371	-	242	37523034	radC	gvip472	-	DNA repair protein RadC
3466	 60.37	0	3675470..3675850	-	126	37523035	-	gll3466	-	hypothetical protein
3467	 59.09	0	3676002..3676529	-	175	37523036	-	gll3467	-	hypothetical protein
3468	 65.73	0	3676775..3677950	+	391	37523037	-	glr3468	-	succinyldiaminopimelate transaminase
3469	 62.70	0	3678295..3678975	-	226	37523038	-	gll3469	-	hypothetical protein
3470	 65.48	0	3678972..3680492	-	506	37523039	-	gll3470	-	hypothetical protein
3471	 68.52	+1	3680528..3681121	-	197	37523040	-	gll3471	-	hypothetical protein
3472	 66.67	0	3681230..3682171	+	313	37523041	-	glr3472	-	ABC transporter ATP-binding protein
3473	 65.02	0	3682168..3683379	+	403	37523042	-	glr3473	-	hypothetical protein
3474	 59.03	0	3683450..3683737	+	95	37523043	-	gsr3474	-	hypothetical protein
3475	 55.74	-1	3683746..3684276	+	176	37523044	-	glr3475	-	hypothetical protein
3476	 56.99	-1	3684594..3684779	-	61	37523045	-	gsl3476	-	hypothetical protein
3477	 67.43	+1	3684799..3685719	-	306	37523046	-	gll3477	-	hypothetical protein
3478	 64.69	0	3685878..3686483	+	201	37523047	-	glr3478	-	hypothetical protein
3479	 63.11	0	3686490..3687812	-	440	37523048	-	gll3479	-	hypothetical protein
3480	 65.71	0	3687900..3688841	+	313	37523049	rfbM	gvip473	-	mannose-1-phosphate guanylyltransferase
3481	 67.52	+1	3689237..3691117	+	626	37523050	-	glr3481	-	hypothetical protein
3482	 67.56	+1	3691305..3693200	+	631	37523051	-	glr3482	-	aminopeptidase
3483	 65.91	0	3693183..3694511	-	442	37523052	-	gll3483	-	hypothetical protein
3484	 66.81	0	3694796..3695482	-	228	37523053	-	gll3484	-	hypothetical protein
3485	 63.45	0	3695815..3696747	+	310	37523054	-	glr3485	-	hypothetical protein
3486	 62.94	0	3696818..3697300	-	160	37523055	-	gll3486	-	hypothetical protein
3487	 67.88	+1	3697533..3698936	-	467	37523056	-	gll3487	-	lysine decarboxylase
3488	 62.48	0	3698955..3699503	+	182	37523057	-	glr3488	-	hypothetical protein
3489	 62.93	0	3699537..3700688	+	383	37523058	-	glr3489	-	transcription elongation factor NusA
3490	 56.92	-1	3700721..3700915	-	64	37523059	-	gsl3490	-	hypothetical protein
3491	 48.56	-2	3701013..3701774	-	253	37523060	-	gll3491	-	hypothetical protein
3492	 65.51	0	3701841..3703310	-	489	37523061	murE	gvip474	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3493	 63.62	0	3703360..3703884	-	174	37523062	-	gll3493	-	hypothetical protein
3494	 60.47	0	3703943..3704200	-	85	37523063	-	gsl3494	-	hypothetical protein
3495	 64.52	0	3704206..3706023	-	605	37523064	-	gll3495	-	pyruvate kinase
3496	 59.70	0	3706075..3706548	-	157	37523065	-	gll3496	-	hypothetical protein
3497	 66.28	0	3706711..3707226	+	171	37523066	-	glr3497	-	hypothetical protein
3498	 61.01	0	3707293..3707628	+	111	37523067	-	glr3498	-	hypothetical protein
3499	 63.64	0	3707697..3708290	+	197	37523068	recR	gvip475	-	recombination protein
3500	 51.23	-2	3708287..3708448	-	53	37523069	-	gsl3500	-	hypothetical protein
3501	 60.31	0	3708512..3708904	-	130	37523070	-	gll3501	-	hypothetical protein
3502	 66.03	0	3709049..3709672	+	207	37523071	-	glr3502	-	hypothetical protein
3503	 66.91	+1	3709687..3710907	+	406	37523072	-	glr3503	-	NADH dehydrogenase
3504	 59.93	0	3711224..3711490	+	88	37523073	-	gsr3504	-	hypothetical protein
3505	 62.33	0	3711494..3711793	+	99	37523074	-	gsr3505	-	hypothetical protein
3506	 66.53	0	3711984..3712730	+	248	37523075	-	glr3506	-	3-oxoacyl-[acyl-carrier protein] reductase
3507	 66.67	0	3712737..3713363	-	208	37523076	-	gll3507	-	hypothetical protein
3508	 67.69	+1	3713339..3714409	+	356	37523077	-	glr3508	-	hypothetical protein
3509	 67.10	+1	3714390..3715079	-	229	37523078	bioD	gvip476	-	dithiobiotin synthetase
3510	 63.73	0	3715079..3715690	-	203	37523079	dcd	gll3510	-	deoxycytidine triphosphate deaminase
3511	 61.88	0	3715718..3716260	-	180	37523080	-	gll3511	-	cob(I)yrinic acid a,c-diamide adenosyltransferase
3512	 60.33	0	3716388..3716813	+	141	37523081	dnaJ	gvip477	-	chaperone protein
3513	 62.85	0	3716839..3717126	+	95	37523082	-	gsr3513	-	hypothetical protein
3514	 64.78	0	3717332..3718336	+	334	37523083	-	glr3514	-	hypothetical protein
3515	 66.54	0	3718273..3719091	-	272	37523084	-	gll3515	-	hypothetical protein
3516	 56.72	-1	3719201..3720115	-	304	37523085	-	gll3516	-	hypothetical protein
3517	 67.87	+1	3720256..3721581	+	441	37523086	-	glr3517	-	hypothetical protein
3518	 71.28	+1	3721592..3722719	+	375	37523087	-	glr3518	-	hypothetical protein
3519	 69.67	+1	3722675..3723673	-	332	161702941	-	gll3519	-	putative lipid kinase
3520	 58.86	0	3723745..3724218	-	157	37523089	-	gll3520	-	hypothetical protein
3521	 58.30	0	3724549..3725325	-	258	37523090	-	gll3521	-	hypothetical protein
3522	 57.91	0	3725334..3725630	-	98	37523091	-	gsl3522	-	hypothetical protein
3523	 41.75	-2	3725697..3725981	-	94	37523092	-	gsl3523	-	hypothetical protein
3524	 55.02	-1	3725978..3726286	-	102	37523093	-	gll3524	-	hypothetical protein
3525	 65.59	0	3726339..3727268	-	309	37523094	ppnK	gll3525	-	inorganic polyphosphate/ATP-NAD kinase
3526	 66.44	0	3727270..3728139	-	289	37523095	-	gll3526	-	lipoyl synthase
3527	 54.32	-1	3728291..3728533	+	80	37523096	-	gsr3527	-	hypothetical protein
3528	 57.51	0	3728530..3728802	+	90	37523097	-	gsr3528	-	hypothetical protein
3529	 65.48	0	3729160..3729495	-	111	37523098	-	gll3529	-	hypothetical protein
3530	 65.13	0	3729583..3730686	+	367	37523099	-	glr3530	-	glycine cleavage system protein T
3531	 60.77	0	3730724..3731113	+	129	37523100	-	glr3531	-	glycine cleavage system protein H
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.