IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3397	 66.67	0	3602183..3602431	+	82	37522966	-	gsr3397	-	hypothetical protein
3398	 55.38	-1	3602415..3602609	+	64	37522967	-	gsr3398	-	hypothetical protein
3399	 61.11	0	3602590..3602787	+	65	37522968	-	gsr3399	-	hypothetical protein
3400	 60.51	0	3602918..3603112	+	64	37522969	-	gsr3400	-	hypothetical protein
3401	 63.14	0	3603166..3604044	+	292	37522970	-	glr3401	-	carboxymethylenebutenolidase
3402	 60.48	0	3604382..3604801	-	139	37522971	-	gll3402	-	hypothetical protein
3403	 64.77	0	3604791..3605264	+	157	37522972	-	glr3403	-	hypothetical protein
3404	 67.39	+1	3605241..3605792	-	183	37522973	-	gll3404	-	hypothetical protein
3405	 66.67	0	3605795..3606250	-	151	37522974	-	gll3405	-	hypothetical protein
3406	 66.86	+1	3606222..3607781	-	519	37522975	-	gll3406	-	hypothetical protein
3407	 65.03	0	3607819..3608673	-	284	37522976	fpg	gvip464	-	formamidopyrimidine-DNA glycosylase
3408	 54.55	-1	3608674..3608871	-	65	37522977	psaE	gvip465	-	photosystem I reaction center subunit IV
3409	 62.61	0	3609033..3609623	+	196	37522978	-	glr3409	-	hypothetical protein
3410	 60.71	0	3609325..3609576	+	83	37522979	-	gsr3410	-	hypothetical protein
3411	 51.15	-2	3609638..3610114	+	158	37522980	-	glr3411	-	hypothetical protein
3412	 62.37	0	3610217..3611404	-	395	37522981	-	gll3412	-	hypothetical protein
3413	 59.86	0	3611407..3611685	-	92	37522982	-	gsl3413	-	hypothetical protein
3414	 62.99	0	3611690..3612151	-	153	37522983	-	gll3414	-	hypothetical protein
3415	 61.49	0	3612264..3612572	-	102	37522984	-	gll3415	-	hypothetical protein
3416	 63.69	0	3612670..3613779	-	369	37522985	recA	gvip466	-	recombinase A
3417	 64.70	0	3614036..3615457	+	473	37522986	leuC	gvip467	-	isopropylmalate isomerase large subunit
3418	 67.79	+1	3615454..3616074	+	206	37522987	leuD	glr3418	-	isopropylmalate isomerase small subunit
3419	 55.40	-1	3616372..3616797	+	141	37522988	-	glr3419	-	hypothetical protein
3420	 54.81	-1	3619086..3619397	+	103	37522989	-	glr3420	-	hypothetical protein
3421	 63.56	0	3619459..3620199	+	246	37522990	-	glr3421	-	ABC transporter ATP-binding protein
3422	 64.01	0	3620196..3621740	+	514	37522991	-	glr3422	-	hypothetical protein
3423	 66.22	0	3621661..3622788	-	375	37522992	hisC	gvip468	-	threonine-phosphate decarboxylase
3424	 60.82	0	3622789..3623079	-	96	37522993	-	gsl3424	-	DNA binding protein HU
3425	 64.88	0	3623163..3625010	-	615	37522994	-	gll3425	-	penicillin-binding protein
3426	 64.03	0	3625097..3625741	+	214	37522995	-	glr3426	-	hypothetical protein
3427	 67.63	+1	3625792..3629424	+	1210	37522996	-	glr3427	-	hypothetical protein
3428	 64.16	0	3629421..3630299	+	292	37522997	ubiA	gvip469	-	prenyltransferase
3429	 64.29	0	3630352..3630729	-	125	37522998	-	gll3429	-	ArsR family transcriptional regulator
3430	 62.42	0	3630850..3631014	-	54	37522999	-	gsl3430	-	metallothionein
3431	 65.96	0	3631121..3632686	-	521	37523000	-	gll3431	-	sulfatase
3432	 64.32	0	3633338..3635038	+	566	37523001	-	glr3432	-	two-component sensor histidine kinase
3433	 60.89	0	3635035..3635484	+	149	37523002	-	glr3433	-	two-component response regulator
3434	 63.13	0	3635481..3637403	+	640	37523003	-	glr3434	-	two-component hybrid sensor and regulator
3435	 64.25	0	3638009..3639127	-	372	37523004	-	gll3435	-	hypothetical protein
3436	 64.60	0	3639232..3642177	+	981	37523005	-	glr3436	-	oxidoreductase
3437	 62.87	0	3642152..3642730	-	192	37523006	-	gll3437	-	hypothetical protein
3438	 62.37	0	3643099..3645450	+	783	37523007	psaA	gvip470	-	photosystem I P700 chlorophyll a apoprotein A1
3439	 62.81	0	3645463..3648081	+	872	37523008	psaB	gvip471	-	photosystem I P700 chlorophyll a apoprotein A2
3440	 68.37	+1	3648141..3649019	-	292	37523009	-	gll3440	-	hypothetical protein
3441	 63.83	0	3649007..3649924	-	305	37523010	-	gll3441	-	hypothetical protein
3442	 62.72	0	3650043..3651029	+	328	37523011	-	glr3442	-	ABC transporter ATP-binding protein
3443	 60.08	0	3651076..3651864	+	262	37523012	-	glr3443	-	hypothetical protein
3444	 68.55	+1	3652125..3652973	+	282	37523013	-	glr3444	-	MerR family transcriptional regulator
3445	 68.56	+1	3652970..3654076	+	368	37523014	-	glr3445	-	hypothetical protein
3446	 67.23	+1	3654492..3655550	+	352	37523015	-	glr3446	-	ribosome-associated GTPase
3447	 62.69	0	3655701..3658088	-	795	37523016	-	gll3447	-	hypothetical protein
3448	 61.03	0	3658141..3658920	+	259	37523017	-	glr3448	-	hypothetical protein
3449	 64.86	0	3658963..3659460	+	165	37523018	-	glr3449	-	hypothetical protein
3450	 66.82	0	3659465..3660118	-	217	37523019	-	gll3450	-	hypothetical protein
3451	 58.89	0	3660159..3660428	-	89	37523020	-	gsl3451	-	hypothetical protein
3452	 62.88	0	3660479..3662275	+	598	37523021	-	glr3452	-	hypothetical protein
3453	 53.43	-1	3662336..3662539	-	67	37523022	-	gsl3453	-	hypothetical protein
3454	 53.63	-1	3662559..3663095	-	178	37523023	-	gll3454	-	hypothetical protein
3455	 51.28	-2	3663179..3663490	+	103	37523024	-	glr3455	-	hypothetical protein
3456	 67.77	+1	3663539..3665347	-	602	37523025	-	gll3456	-	hypothetical protein
3457	 64.43	0	3665350..3667140	-	596	37523026	-	gll3457	-	hypothetical protein
3458	 61.19	0	3667291..3667509	-	72	37523027	-	gsl3458	-	hypothetical protein
3459	 66.95	+1	3667814..3669247	+	477	37523028	-	glr3459	-	hypothetical protein
3460	 61.23	0	3669380..3670483	-	367	37523029	-	gll3460	-	oxidoreductase
3461	 63.27	0	3670688..3670834	-	48	37523030	-	gsl3461	-	hypothetical protein
3462	 54.45	-1	3671026..3671508	-	160	37523031	-	gll3462	-	hypothetical protein
3463	 58.40	0	3671644..3672441	+	265	37523032	-	glr3463	-	hypothetical protein
3464	 62.92	0	3672527..3674449	-	640	37523033	-	gll3464	-	hypothetical protein
3465	 69.55	+1	3674643..3675371	-	242	37523034	radC	gvip472	-	DNA repair protein RadC
3466	 60.37	0	3675470..3675850	-	126	37523035	-	gll3466	-	hypothetical protein
3467	 59.09	0	3676002..3676529	-	175	37523036	-	gll3467	-	hypothetical protein
3468	 65.73	0	3676775..3677950	+	391	37523037	-	glr3468	-	succinyldiaminopimelate transaminase
3469	 62.70	0	3678295..3678975	-	226	37523038	-	gll3469	-	hypothetical protein
3470	 65.48	0	3678972..3680492	-	506	37523039	-	gll3470	-	hypothetical protein
3471	 68.52	+1	3680528..3681121	-	197	37523040	-	gll3471	-	hypothetical protein
3472	 66.67	0	3681230..3682171	+	313	37523041	-	glr3472	-	ABC transporter ATP-binding protein
3473	 65.02	0	3682168..3683379	+	403	37523042	-	glr3473	-	hypothetical protein
3474	 59.03	0	3683450..3683737	+	95	37523043	-	gsr3474	-	hypothetical protein
3475	 55.74	-1	3683746..3684276	+	176	37523044	-	glr3475	-	hypothetical protein
3476	 56.99	-1	3684594..3684779	-	61	37523045	-	gsl3476	-	hypothetical protein
3477	 67.43	+1	3684799..3685719	-	306	37523046	-	gll3477	-	hypothetical protein
3478	 64.69	0	3685878..3686483	+	201	37523047	-	glr3478	-	hypothetical protein
3479	 63.11	0	3686490..3687812	-	440	37523048	-	gll3479	-	hypothetical protein
3480	 65.71	0	3687900..3688841	+	313	37523049	rfbM	gvip473	-	mannose-1-phosphate guanylyltransferase
3481	 67.52	+1	3689237..3691117	+	626	37523050	-	glr3481	-	hypothetical protein
3482	 67.56	+1	3691305..3693200	+	631	37523051	-	glr3482	-	aminopeptidase
3483	 65.91	0	3693183..3694511	-	442	37523052	-	gll3483	-	hypothetical protein
3484	 66.81	0	3694796..3695482	-	228	37523053	-	gll3484	-	hypothetical protein
3485	 63.45	0	3695815..3696747	+	310	37523054	-	glr3485	-	hypothetical protein
3486	 62.94	0	3696818..3697300	-	160	37523055	-	gll3486	-	hypothetical protein
3487	 67.88	+1	3697533..3698936	-	467	37523056	-	gll3487	-	lysine decarboxylase
3488	 62.48	0	3698955..3699503	+	182	37523057	-	glr3488	-	hypothetical protein
3489	 62.93	0	3699537..3700688	+	383	37523058	-	glr3489	-	transcription elongation factor NusA
3490	 56.92	-1	3700721..3700915	-	64	37523059	-	gsl3490	-	hypothetical protein
3491	 48.56	-2	3701013..3701774	-	253	37523060	-	gll3491	-	hypothetical protein
3492	 65.51	0	3701841..3703310	-	489	37523061	murE	gvip474	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
3493	 63.62	0	3703360..3703884	-	174	37523062	-	gll3493	-	hypothetical protein
3494	 60.47	0	3703943..3704200	-	85	37523063	-	gsl3494	-	hypothetical protein
3495	 64.52	0	3704206..3706023	-	605	37523064	-	gll3495	-	pyruvate kinase
3496	 59.70	0	3706075..3706548	-	157	37523065	-	gll3496	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.