IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3311	 64.21	0	3510442..3511458	+	338	37522880	-	glr3311	-	ABC transporter solute-binding protein
3312	 66.39	0	3511483..3512214	+	243	37522881	-	glr3312	-	ABC transporter ATP-binding protein
3313	 62.02	0	3512214..3513116	+	300	37522882	-	glr3313	-	ABC transporter permease protein
3314	 62.25	0	3513109..3513516	-	135	37522883	-	gll3314	-	hypothetical protein
3315	 64.95	0	3513626..3514267	-	213	37522884	-	gll3315	-	hypothetical protein
3316	 63.10	0	3514287..3515801	-	504	37522885	-	gll3316	-	4-alpha-glucanotransferase
3317	 63.73	0	3515892..3516299	-	135	37522886	-	gll3317	-	hypothetical protein
3318	 64.05	0	3516332..3517018	+	228	37522887	-	glr3318	-	hypothetical protein
3319	 63.85	0	3517062..3518231	-	389	37522888	-	gll3319	-	hypothetical protein
3320	 50.68	-2	3518883..3520646	-	587	37522889	-	gll3320	-	hypothetical protein
3321	 56.79	-1	3520978..3521301	+	107	37522890	-	glr3321	-	hypothetical protein
3322	 67.10	+1	3521396..3524893	+	1165	37522891	-	glr3322	-	chromosome segregation SMC protein
3323	 62.10	0	3525214..3526635	-	473	37522892	-	gll3323	-	pyruvate kinase
3324	 63.34	0	3526660..3527652	-	330	37522893	-	gll3324	-	L-lactate dehydrogenase A chain
3325	 61.24	0	3527689..3528720	-	343	37522894	gap1	gvip457	-	glyceraldehyde-3-phosphate dehydrogenase
3326	 63.26	0	3529118..3529675	-	185	37522895	-	gll3326	-	hypothetical protein
3327	 66.92	+1	3529931..3530725	+	264	37522896	-	glr3327	-	hypothetical protein
3328	 68.00	+1	3530780..3534448	+	1222	37522897	chlH	gvip458	-	magnesium protoporphyrin IX chelatase subunit H
3329	 69.55	+1	3534436..3535338	+	300	37522898	-	glr3329	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
3330	 65.76	0	3535451..3536332	+	293	37522899	-	glr3330	-	chemotaxis protein methyltransferase
3331	 67.45	+1	3536471..3537238	-	255	37522900	-	gll3331	-	dolichyl phosphoryl mannose synthase
3332	 65.91	0	3537247..3539085	-	612	37522901	-	gll3332	-	hypothetical protein
3333	 62.77	0	3539166..3540320	-	384	37522902	ycf84	gvip459	-	hypothetical protein
3334	 62.71	0	3540393..3541151	-	252	37522903	-	gll3334	-	ABC transporter ATP-binding protein
3335	 57.87	0	3541200..3542006	-	268	37522904	-	gll3335	-	ABC transporter permease protein
3336	 59.12	0	3542513..3542830	+	105	37522905	-	glr3336	-	hypothetical protein
3337	 63.01	0	3542845..3543309	-	154	37522906	-	gll3337	-	hypothetical protein
3338	 60.94	0	3543449..3543745	+	98	37522907	-	gsr3338	-	hypothetical protein
3339	 66.53	0	3543742..3544500	-	252	37522908	-	gll3339	-	hydroxyacylglutathione hydrolase
3340	 53.98	-1	3544558..3544896	+	112	37522909	-	glr3340	-	hypothetical protein
3341	 64.00	0	3544946..3547453	-	835	37522910	-	gll3341	-	mannose-1-phosphate guanyltransferase
3342	 61.48	0	3547620..3548660	+	346	37522911	glpX	gvip460	-	fructose 1,6-bisphosphatase II
3343	 61.09	0	3548747..3549499	-	250	37522912	-	gll3343	-	hypothetical protein
3344	 64.66	0	3549606..3552143	-	845	37522913	-	gll3344	-	hypothetical protein
3345	 64.99	0	3552250..3552606	-	118	37522914	-	gll3345	-	hypothetical protein
3346	 49.40	-2	3552791..3553288	+	165	37522915	-	glr3346	-	hypothetical protein
3347	 60.42	0	3553745..3554176	-	143	37522916	-	gll3347	-	hypothetical protein
3348	 58.67	0	3554394..3554906	-	170	37522917	-	gll3348	-	hypothetical protein
3349	 58.39	0	3554913..3555383	-	156	37522918	-	gll3349	-	hypothetical protein
3350	 58.60	0	3555351..3555722	+	123	37522919	-	glr3350	-	hypothetical protein
3351	 61.37	0	3556336..3557241	+	301	37522920	-	glr3351	-	ParB family chromosome partitioning protein
3352	 63.27	0	3558252..3560930	+	892	37522921	-	glr3352	-	hypothetical protein
3353	 65.75	0	3560975..3562060	+	361	37522922	-	glr3353	-	hypothetical protein
3354	 66.71	0	3562079..3564301	+	740	37522923	-	glr3354	-	hypothetical protein
3355	 66.46	0	3564402..3565373	+	323	37522924	-	glr3355	-	hypothetical protein
3356	 62.85	0	3565377..3566870	-	497	37522925	lysS	gvip461	-	lysyl-tRNA synthetase
3357	 51.92	-2	3567215..3567553	-	112	37522926	-	gll3357	-	hypothetical protein
3358	 61.72	0	3567563..3567865	-	100	37522927	-	gll3358	-	hypothetical protein
3359	 65.39	0	3567904..3568842	-	312	37522928	-	gll3359	-	hypothetical protein
3360	 65.56	0	3568953..3569858	+	301	37522929	-	glr3360	-	LysR family transcriptional regulator
3361	 59.37	0	3569958..3570368	+	136	37522930	-	glr3361	-	hypothetical protein
3362	 62.07	0	3570385..3572103	-	572	37522931	-	gll3362	-	electron transfer flavoprotein-ubiquinone oxidoreductase
3363	 64.00	0	3572081..3573166	-	361	37522932	-	gll3363	-	electron transfer flavoprotein, alpha subunit
3364	 64.61	0	3573163..3573987	-	274	37522933	-	gll3364	-	electron transfer flavoprotein, beta subunit
3365	 65.15	0	3574181..3574642	-	153	37522934	-	gll3365	-	hypothetical protein
3366	 61.20	0	3574621..3575004	-	127	37522935	-	gll3366	-	hypothetical protein
3367	 58.60	0	3575012..3575569	-	185	37522936	-	gll3367	-	hypothetical protein
3368	 54.18	-1	3576348..3577052	-	234	37522937	-	gll3368	-	hypothetical protein
3369	 53.41	-1	3577811..3579349	+	512	37522938	-	glr3369	-	hypothetical protein
3370	 45.47	-2	3580848..3581432	+	194	37522939	-	glr3370	-	hypothetical protein
3371	 54.24	-1	3581452..3582489	+	345	37522940	-	glr3371	-	hypothetical protein
3372	 61.75	0	3582963..3583145	-	60	37522941	-	gsl3372	-	hypothetical protein
3373	 65.42	0	3583399..3583638	-	79	37522942	-	gsl3373	-	hypothetical protein
3374	 61.08	0	3583788..3584753	+	321	37522943	-	glr3374	-	hypothetical protein
3375	 62.31	0	3584750..3586357	-	535	37522944	-	gll3375	-	hypothetical protein
3376	 65.38	0	3586762..3587463	+	233	37522945	-	glr3376	-	hypothetical protein
3377	 64.97	0	3587545..3588666	+	373	37522946	-	glr3377	-	transaldolase
3378	 66.10	0	3588663..3589187	-	174	37522947	moaC	gll3378	-	molybdenum cofactor biosynthesis protein C
3379	 57.97	0	3589262..3589606	+	114	37522948	-	glr3379	-	hypothetical protein
3380	 62.35	0	3590124..3590888	+	254	37522949	-	glr3380	-	hypothetical protein
3381	 53.33	-1	3590937..3591206	+	89	37522950	-	gsr3381	-	hypothetical protein
3382	 62.68	0	3591283..3592410	+	375	37522951	-	glr3382	-	hypothetical protein
3383	 62.95	0	3592407..3593051	+	214	37522952	hisG	gvip462	-	ATP phosphoribosyltransferase catalytic subunit
3384	 56.81	-1	3593048..3593260	-	70	37522953	-	gsl3384	-	hypothetical protein
3385	 63.93	0	3593348..3594079	-	243	37522954	-	gll3385	-	hypothetical protein
3386	 60.37	0	3594100..3594591	+	163	37522955	-	glr3386	-	nucleotide-binding protein
3387	 67.94	+1	3594575..3595279	-	234	37522956	-	gll3387	-	hypothetical protein
3388	 62.43	0	3595387..3595740	+	117	37522957	-	glr3388	-	thiol:disulfide interchange protein; TrxA
3389	 62.06	0	3595762..3596304	+	180	37522958	-	glr3389	-	bacterioferritin comigratory protein
3390	 61.43	0	3596304..3596723	+	139	37522959	-	glr3390	-	hypothetical protein
3391	 48.05	-2	3596967..3597992	+	341	37522960	-	glr3391	-	hypothetical protein
3392	 61.64	0	3598231..3598827	+	198	37522961	-	glr3392	-	hypothetical protein
3393	 67.26	+1	3598876..3600063	+	395	37522962	aroC	gvip463	-	chorismate synthase
3394	 60.26	0	3600119..3600649	+	176	37522963	-	glr3394	-	hypothetical protein
3395	 66.52	0	3600674..3601375	-	233	37522964	-	gll3395	-	Xaa-Pro dipeptidase
3396	 64.84	0	3601206..3601970	-	254	37522965	-	gll3396	-	Xaa-Pro dipeptidase
3397	 66.67	0	3602183..3602431	+	82	37522966	-	gsr3397	-	hypothetical protein
3398	 55.38	-1	3602415..3602609	+	64	37522967	-	gsr3398	-	hypothetical protein
3399	 61.11	0	3602590..3602787	+	65	37522968	-	gsr3399	-	hypothetical protein
3400	 60.51	0	3602918..3603112	+	64	37522969	-	gsr3400	-	hypothetical protein
3401	 63.14	0	3603166..3604044	+	292	37522970	-	glr3401	-	carboxymethylenebutenolidase
3402	 60.48	0	3604382..3604801	-	139	37522971	-	gll3402	-	hypothetical protein
3403	 64.77	0	3604791..3605264	+	157	37522972	-	glr3403	-	hypothetical protein
3404	 67.39	+1	3605241..3605792	-	183	37522973	-	gll3404	-	hypothetical protein
3405	 66.67	0	3605795..3606250	-	151	37522974	-	gll3405	-	hypothetical protein
3406	 66.86	+1	3606222..3607781	-	519	37522975	-	gll3406	-	hypothetical protein
3407	 65.03	0	3607819..3608673	-	284	37522976	fpg	gvip464	-	formamidopyrimidine-DNA glycosylase
3408	 54.55	-1	3608674..3608871	-	65	37522977	psaE	gvip465	-	photosystem I reaction center subunit IV
3409	 62.61	0	3609033..3609623	+	196	37522978	-	glr3409	-	hypothetical protein
3410	 60.71	0	3609325..3609576	+	83	37522979	-	gsr3410	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.