IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3191	 67.01	+1	3397799..3398377	-	192	37522760	-	gll3191	-	hypothetical protein
3192	 64.91	0	3398396..3399763	-	455	37522761	-	gll3192	-	hypothetical protein
3193	 62.00	0	3399838..3400287	-	149	37522762	-	gll3193	-	hypothetical protein
3194	 59.05	0	3400394..3400603	-	69	37522763	-	gsl3194	-	hypothetical protein
3195	 62.52	0	3400771..3401397	-	208	37522764	-	gll3195	-	hypothetical protein
3196	 66.67	0	3401477..3401710	-	77	37522765	-	gsl3196	-	hypothetical protein
3197	 49.41	-2	3401742..3401996	-	84	37522766	-	gsl3197	-	hypothetical protein
3198	 63.19	0	3402505..3404802	+	765	37522767	topA	gvip441	-	DNA topoisomerase I
3199	 62.95	0	3404862..3406124	+	420	37522768	-	glr3199	-	sugar binding protein
3200	 57.75	0	3406219..3406857	+	212	37522769	-	glr3200	-	hypothetical protein
3201	 62.42	0	3407115..3410084	+	989	37522770	-	glr3201	-	hypothetical protein
3202	 60.74	0	3410146..3410550	-	134	37522771	-	gll3202	-	hypothetical protein
3203	 54.61	-1	3410630..3410911	-	93	37522772	-	gsl3203	-	hypothetical protein
3204	 65.87	0	3411095..3413092	+	665	37522773	-	glr3204	-	hypothetical protein
3205	 66.30	0	3413123..3413935	+	270	37522774	-	glr3205	-	hypothetical protein
3206	 62.81	0	3413949..3415580	-	543	37522775	-	gll3206	-	hypothetical protein
3207	 58.98	0	3415687..3417495	-	602	37522776	-	gll3207	-	hypothetical protein
3208	 62.26	0	3417425..3418309	-	294	37522777	-	gll3208	-	hypothetical protein
3209	 64.73	0	3418296..3418862	-	188	37522778	-	gll3209	-	hypothetical protein
3210	 65.35	0	3418862..3420229	-	455	37522779	engA	gll3210	-	GTP-binding protein EngA
3211	 65.11	0	3420270..3421040	-	256	37522780	-	gll3211	-	hypothetical protein
3212	 65.25	0	3421125..3422111	+	328	37522781	hemC	gvip442	-	porphobilinogen deaminase
3213	 61.62	0	3422106..3422660	-	184	37522782	-	gll3213	-	hypothetical protein
3214	 66.39	0	3422925..3424352	-	475	37522783	-	gll3214	-	hypothetical protein
3215	 64.86	0	3422958..3423455	+	165	37522784	-	glr3215	-	signal peptidase
3216	 67.13	+1	3423452..3423667	-	71	37522785	-	gsl3216	-	hypothetical protein
3217	 63.58	0	3424755..3425273	+	172	37522786	cpcB	gvip443	-	phycocyanin beta chain
3218	 61.76	0	3425312..3425800	+	162	37522787	cpcA	gvip444	-	phycocyanin alpha chain
3219	 57.42	0	3425928..3426587	-	219	37522788	cpcC	gvip445	-	phycocyanin-associated rod linker protein
3220	 61.94	0	3427144..3428031	+	295	37522789	-	glr3220	-	hypothetical protein
3221	 65.22	0	3428025..3428300	-	91	37522790	-	gsl3221	-	hypothetical protein
3222	 53.62	-1	3429519..3429863	+	114	37522791	-	glr3222	-	putative transposase
3223	 56.92	-1	3429864..3430181	+	105	37522792	-	glr3223	-	putative transposase
3224	 58.06	0	3431722..3432000	+	92	37522793	-	gsr3224	-	hypothetical protein
3225	 60.85	0	3431997..3432374	+	125	37522794	-	glr3225	-	hypothetical protein
3226	 44.51	-2	3432641..3433114	-	157	37522795	-	gll3226	-	hypothetical protein
3227	 46.96	-2	3433179..3434066	-	295	37522796	-	gll3227	-	transcriptional regulator
3228	 59.26	0	3434308..3434604	+	98	37522797	-	gsr3228	-	hypothetical protein
3229	 62.91	0	3434665..3435810	+	381	37522798	-	glr3229	-	hypothetical protein
3230	 64.40	0	3435813..3437357	+	514	37522799	-	glr3230	-	beta-glycosidase
3231	 62.40	0	3437678..3438637	-	319	37522800	-	gll3231	-	hypothetical protein
3232	 62.07	0	3439067..3440197	+	376	37522801	dnaN	gvip446	-	DNA polymerase III subunit beta
3233	 62.28	0	3440202..3441296	-	364	37522802	-	gll3233	-	translation-associated GTPase
3234	 64.23	0	3441454..3442356	+	300	37522803	rfbD	gvip447	-	dTDP-6-deoxy-L-mannose-dehydrogenase
3235	 63.50	0	3442360..3443400	+	346	37522804	rfbB	gvip448	-	dTDP-glucose 4-6-dehydratase
3236	 65.45	0	3443328..3444065	+	245	37522805	-	glr3236	-	glycosyl transferase
3237	 63.67	0	3444065..3445132	+	355	37522806	rfbA	gvip449	-	glucose-1-phosphate thymidylyltransferase
3238	 54.01	-1	3445142..3445378	+	78	37522807	-	gsr3238	-	hypothetical protein
3239	 63.94	0	3445476..3446540	+	354	37522808	-	glr3239	-	hypothetical protein
3240	 66.67	0	3446470..3447771	+	433	37522809	-	glr3240	-	hypothetical protein
3241	 63.87	0	3447783..3448568	+	261	37522810	-	glr3241	-	capsular polysaccharide biosynthesis protein, CapC-like protein
3242	 63.23	0	3448575..3448865	+	96	37522811	-	gsr3242	-	hypothetical protein
3243	 65.93	0	3448878..3450500	+	540	37522812	-	glr3243	-	hypothetical protein
3244	 56.52	-1	3450722..3451342	+	206	37522813	-	glr3244	-	hypothetical protein
3245	 45.61	-2	3451461..3451688	+	75	37522814	-	gsr3245	-	hypothetical protein
3246	 52.25	-2	3451685..3452017	+	110	37522815	-	glr3246	-	hypothetical protein
3247	 63.45	0	3452021..3452611	-	196	37522816	-	gll3247	-	hypothetical protein
3248	 65.02	0	3452713..3453621	-	302	37522817	-	gll3248	-	tRNA delta-2-isopentenylpyrophosphate
3249	 61.86	0	3453618..3454304	-	228	37522818	-	gll3249	-	hypothetical protein
3250	 61.57	0	3454358..3455161	-	267	37522819	-	gll3250	-	hypothetical protein
3251	 39.93	-2	3455900..3458569	+	889	37522820	-	glr3251	-	hypothetical protein
3252	 58.40	0	3458662..3459036	+	124	37522821	-	glr3252	-	putative transposase
3253	 56.77	-1	3459231..3459422	+	63	37522822	-	gsr3253	-	putative transposase
3254	 63.77	0	3459476..3459889	+	137	37522823	-	glr3254	-	hypothetical protein
3255	 57.47	0	3459908..3460483	-	191	37522824	-	gll3255	-	hypothetical protein
3256	 63.28	0	3460753..3461343	+	196	37522825	-	glr3256	-	hypothetical protein
3257	 60.99	0	3461405..3462373	+	322	37522826	-	glr3257	-	hypothetical protein
3258	 64.60	0	3462642..3463607	-	321	37522827	-	gll3258	-	glutamyl endopeptidase
3259	 62.20	0	3463908..3465431	-	507	37522828	-	gll3259	-	hypothetical protein
3260	 56.61	-1	3465495..3465683	-	62	37522829	-	gsl3260	-	hypothetical protein
3261	 54.00	-1	3465978..3466127	-	49	37522830	-	gsl3261	-	CAB/ELIP/HLIP superfamily protein
3262	 64.85	0	3466249..3466854	-	201	37522831	-	gll3262	-	hypothetical protein
3263	 57.94	0	3466889..3467335	+	148	37522832	-	glr3263	-	hypothetical protein
3264	 63.10	0	3467332..3468060	+	242	37522833	-	glr3264	-	ABC transporter ATP-binding protein
3265	 62.77	0	3468740..3469021	+	93	37522834	-	gsr3265	-	hypothetical protein
3266	 57.47	0	3469047..3469481	+	144	37522835	-	glr3266	-	putative transposase
3267	 47.11	-2	3469559..3470095	+	178	37522836	-	glr3267	-	putative transposase
3268	 60.42	0	3470391..3470822	+	143	37522837	-	glr3268	-	hypothetical protein
3269	 61.81	0	3471014..3472969	-	651	37522838	-	gll3269	-	L-sorbosone dehydrogenase
3270	 65.85	0	3473217..3473951	+	244	37522839	-	glr3270	-	hypothetical protein
3271	 67.76	+1	3474002..3476113	+	703	37522840	-	glr3271	-	prolyl endopeptidase
3272	 60.46	0	3476133..3476438	-	101	37522841	-	gll3272	-	hypothetical protein
3273	 62.53	0	3476473..3477897	-	474	37522842	comA	gvip450	-	hypothetical protein
3274	 65.66	0	3478010..3478603	+	197	37522843	-	glr3274	-	hypothetical protein
3275	 56.03	-1	3478651..3478791	-	46	37522844	-	gsl3275	-	hypothetical protein
3276	 69.53	+1	3478982..3480970	+	662	37522845	-	glr3276	-	hypothetical protein
3277	 67.80	+1	3480975..3482918	+	647	37522846	-	glr3277	-	hypothetical protein
3278	 64.34	0	3482915..3483772	-	285	37522847	aroE	gvip451	-	shikimate 5-dehydrogenase
3279	 64.71	0	3483872..3485662	+	596	37522848	ilvG	gvip452	-	acetolactate synthase 3 catalytic subunit
3280	 63.64	0	3486281..3487603	+	440	37522849	purA	gvip453	-	adenylosuccinate synthetase
3281	 61.86	0	3487685..3488557	+	290	37522850	uppP	glr3281	-	undecaprenyl pyrophosphate phosphatase
3282	 59.03	0	3488544..3488831	-	95	37522851	-	gsl3282	-	glutamyl-tRNA(Gln) amidotransferase subunit C
3283	 56.03	-1	3488872..3489576	-	234	37522852	-	gll3283	-	hypothetical protein
3284	 61.68	0	3489648..3490088	-	146	37522853	-	gll3284	-	hypothetical protein
3285	 59.94	0	3490173..3490841	-	222	37522854	ntcA	gvip454	-	nitrogen-responsive regulatory protein
3286	 62.44	0	3491010..3491222	+	70	37522855	-	gsr3286	-	hypothetical protein
3287	 60.98	0	3491278..3491523	-	81	37522856	psaC	gvip455	-	photosystem I subunit VII
3288	 64.69	0	3491636..3492595	-	319	37522857	-	gll3288	-	hypothetical protein
3289	 62.74	0	3492606..3493598	-	330	37522858	-	gll3289	-	hypothetical protein
3290	 65.08	0	3493667..3494677	-	336	37522859	-	gll3290	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.