IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2933	 65.50	0	3128724..3129920	+	398	37522502	argG	gvip407	-	argininosuccinate synthase
2934	 61.13	0	3129926..3130972	-	348	37522503	-	gll2934	-	hypothetical protein
2935	 66.67	0	3130952..3131992	+	346	37522504	-	glr2935	-	hypothetical protein
2936	 51.28	-2	3132049..3132438	+	129	37522505	-	glr2936	-	hypothetical protein
2937	 53.58	-1	3132493..3133134	+	213	37522506	-	glr2937	-	hypothetical protein
2938	 52.05	-2	3133077..3133295	+	72	37522507	-	gsr2938	-	hypothetical protein
2939	 65.05	0	3133597..3134649	-	350	37522508	-	gll2939	-	hypothetical protein
2940	 68.23	+1	3134650..3135801	+	383	37522509	-	glr2940	-	hypothetical protein
2941	 67.24	+1	3135885..3140555	+	1556	37522510	-	glr2941	-	hypothetical protein
2942	 59.84	0	3140645..3141010	+	121	37522511	-	glr2942	-	single-strand DNA-binding protein
2943	 65.81	0	3141011..3141823	+	270	37522512	-	glr2943	-	nitrilase-like protein
2944	 62.89	0	3141939..3142892	+	317	37522513	-	glr2944	-	succinate dehydrogenase iron-sulfur subunit
2945	 66.33	0	3142889..3143785	+	298	37522514	-	glr2945	-	succinate dehydrogenase chain C
2946	 63.16	0	3143830..3144057	+	75	37522515	-	gsr2946	-	hypothetical protein
2947	 63.94	0	3144240..3144716	+	158	37522516	-	glr2947	-	hypothetical protein
2948	 62.73	0	3144772..3145584	-	270	37522517	-	gll2948	-	hypothetical protein
2949	 56.08	-1	3145692..3148826	+	1044	37522518	-	glr2949	-	hypothetical protein
2950	 61.02	0	3149193..3150131	-	312	37522519	-	gll2950	-	hypothetical protein
2951	 59.47	0	3150118..3150687	-	189	37522520	-	gll2951	-	hypothetical protein
2952	 64.22	0	3150744..3150947	-	67	37522521	-	gsl2952	-	hypothetical protein
2953	 57.31	-1	3151295..3152074	+	259	37522522	-	glr2953	-	hypothetical protein
2954	 59.04	0	3152034..3153173	-	379	37522523	-	gll2954	-	hypothetical protein
2955	 61.44	0	3153270..3153575	-	101	37522524	-	gll2955	-	hypothetical protein
2956	 51.96	-2	3153614..3154225	-	203	37522525	-	gll2956	-	hypothetical protein
2957	 60.32	0	3154225..3155091	-	288	37522526	-	gll2957	-	hypothetical protein
2958	 57.74	0	3155123..3155794	-	223	37522527	-	gll2958	-	hypothetical protein
2959	 62.60	0	3155901..3156515	-	204	37522528	-	gll2959	-	hypothetical protein
2960	 58.52	0	3156630..3157022	-	130	37522529	-	gll2960	-	hypothetical protein
2961	 61.56	0	3157701..3158600	+	299	37522530	-	glr2961	-	hypothetical protein
2962	 64.57	0	3158667..3159668	+	333	37522531	-	glr2962	-	hypothetical protein
2963	 61.86	0	3159987..3161150	+	387	37522532	-	glr2963	-	hypothetical protein
2964	 58.11	0	3161158..3161613	+	151	37522533	-	glr2964	-	hypothetical protein
2965	 59.75	0	3161632..3163047	+	471	37522534	-	glr2965	-	hypothetical protein
2966	 55.54	-1	3163063..3166314	+	1083	37522535	-	glr2966	-	hypothetical protein
2967	 50.11	-2	3166314..3167201	+	295	37522536	-	glr2967	-	hypothetical protein
2968	 59.81	0	3167198..3168976	+	592	37522537	-	glr2968	-	hypothetical protein
2969	 49.70	-2	3169023..3170183	+	386	37522538	-	glr2969	-	hypothetical protein
2970	 63.27	0	3170290..3170907	+	205	37522539	-	glr2970	-	hypothetical protein
2971	 58.20	0	3170904..3171482	+	192	37522540	-	glr2971	-	hypothetical protein
2972	 50.94	-2	3171502..3172137	-	211	37522541	-	gll2972	-	hypothetical protein
2973	 62.77	0	3172181..3172975	-	264	37522542	-	gll2973	-	hypothetical protein
2974	 67.23	+1	3172975..3173685	-	236	37522543	-	gll2974	-	2-phosphosulfolactate phosphatase
2975	 70.39	+1	3173693..3174604	-	303	37522544	-	gll2975	-	hypothetical protein
2976	 70.50	+1	3174604..3175620	-	338	37522545	-	gll2976	-	hypothetical protein
2977	 59.49	0	3175775..3176206	+	143	37522546	-	glr2977	-	MarR family transcriptional regulator
2978	 69.63	+1	3176193..3178148	+	651	37522547	-	glr2978	-	hypothetical protein
2979	 61.74	0	3178078..3179781	+	567	37522548	-	glr2979	-	hypothetical protein
2980	 66.27	0	3179778..3181028	+	416	37522549	-	glr2980	-	hypothetical protein
2981	 62.29	0	3181025..3182167	+	380	37522550	-	glr2981	-	hypothetical protein
2982	 55.86	-1	3182162..3182596	-	144	37522551	-	gll2982	-	hypothetical protein
2983	 56.59	-1	3182598..3182855	-	85	37522552	-	gsl2983	-	hypothetical protein
2984	 62.59	0	3183107..3184675	-	522	37522553	-	gll2984	-	putative transposase
2985	 65.15	0	3184629..3186011	-	460	37522554	-	gll2985	-	hypothetical protein
2986	 64.29	0	3186104..3186988	+	294	37522555	-	glr2986	-	LysR family transcriptional regulator
2987	 60.44	0	3186995..3187315	-	106	37522556	-	gll2987	-	hypothetical protein
2988	 65.28	0	3187499..3189232	+	577	37522557	sdhA	glr2988	-	succinate dehydrogenase flavoprotein subunit
2989	 64.56	0	3189487..3190104	-	205	37522558	-	gll2989	-	hypothetical protein
2990	 59.64	0	3190404..3191171	-	255	37522559	-	gll2990	-	hypothetical protein
2991	 62.35	0	3191238..3192881	-	547	37522560	-	gll2991	-	phosphodiesterase/alkaline phosphatase D
2992	 62.31	0	3192964..3193422	-	152	37522561	-	gll2992	-	hypothetical protein
2993	 63.81	0	3193470..3193994	+	174	37522562	-	glr2993	-	hypothetical protein
2994	 64.20	0	3194005..3194694	+	229	37522563	-	glr2994	-	pantothenate kinase
2995	 57.78	0	3194710..3194979	-	89	37522564	-	gsl2995	-	hypothetical protein
2996	 62.07	0	3195179..3197896	-	905	37522565	-	gll2996	-	hypothetical protein
2997	 51.11	-2	3198216..3198305	-	29	37522566	psbM	gvip408	-	photosystem II reaction center M protein
2998	 58.59	0	3198374..3198670	-	98	37522567	-	gsl2998	-	ferredoxin
2999	 63.00	0	3198921..3200531	+	536	37522568	psbB	gvip409	-	photosystem II core light harvesting protein
3000	 49.52	-2	3200614..3200718	+	34	37522569	psbT	gvip410	-	photosystem II protein
3001	 55.30	-1	3200813..3200944	-	43	37522570	psbN	gvip411	-	photosystem II reaction center protein N
3002	 58.23	0	3201105..3201341	+	78	37522571	psbH	gvip412	-	photosystem II reaction center protein H
3003	 64.91	0	3201423..3201707	+	94	37522572	-	gsr3003	-	hypothetical protein
3004	 66.88	+1	3201670..3203526	-	618	37522573	ggt	gvip413	-	gamma-glutamyltranspeptidase
3005	 66.67	0	3203490..3204245	+	251	37522574	-	glr3005	-	hypothetical protein
3006	 63.01	0	3204265..3204510	-	81	37522575	-	gsl3006	-	hypothetical protein
3007	 62.79	0	3204425..3205147	-	240	37522576	-	gll3007	-	hypothetical protein
3008	 62.20	0	3205144..3206061	-	305	37522577	-	gll3008	-	group 2 sigma 70-type sigma factor
3009	 70.85	+1	3206257..3206949	-	230	37522578	-	gll3009	-	acyltransferase
3010	 66.60	0	3206912..3208423	-	503	37522579	-	gll3010	-	hypothetical protein
3011	 63.11	0	3208536..3209546	+	336	37522580	trpS	gvip414	-	tryptophanyl-tRNA synthetase
3012	 61.33	0	3209602..3210744	+	380	37522581	-	glr3012	-	methylcitrate synthase
3013	 65.22	0	3210787..3211410	+	207	37522582	-	glr3013	-	hypothetical protein
3014	 61.70	0	3211411..3211893	+	160	37522583	-	glr3014	-	hypothetical protein
3015	 66.02	0	3211938..3213167	+	409	37522584	-	glr3015	-	aluminum resistance protein
3016	 60.73	0	3213200..3213721	-	173	37522585	-	gll3016	-	hypothetical protein
3017	 68.76	+1	3213815..3214723	-	302	37522586	-	gll3017	-	alcohol dehydrogenase
3018	 64.77	0	3214964..3216016	-	350	37522587	-	gll3018	-	hypothetical protein
3019	 57.83	0	3216438..3216935	+	165	37522588	-	glr3019	-	hypothetical protein
3020	 61.86	0	3217014..3218219	-	401	37522589	-	gll3020	-	hypothetical protein
3021	 66.56	0	3218834..3219748	-	304	37522590	-	gll3021	-	tetrapyrrole methylase family protein
3022	 60.22	0	3219687..3220337	-	216	37522591	-	gll3022	-	hypothetical protein
3023	 59.83	0	3220371..3221921	-	516	37522592	metG	gvip415	-	methionyl-tRNA synthetase
3024	 62.07	0	3222128..3223105	-	325	37522593	-	gll3024	-	molybdenum cofactor biosynthesis protein
3025	 63.37	0	3223138..3223440	-	100	37522594	-	gll3025	-	hypothetical protein
3026	 64.85	0	3223450..3225270	-	606	37522595	-	gll3026	-	hypothetical protein
3027	 65.86	0	3225327..3226067	+	246	37522596	-	glr3027	-	hypothetical protein
3028	 59.57	0	3226104..3226427	-	107	37522597	-	gll3028	-	hypothetical protein
3029	 64.93	0	3226534..3227913	+	459	37522598	-	glr3029	-	dihydrolipoamide dehydrogenase
3030	 61.78	0	3227928..3228152	+	74	37522599	-	gsr3030	-	hypothetical protein
3031	 61.79	0	3228118..3228897	-	259	37522600	-	gll3031	-	hypothetical protein
3032	 65.02	0	3229047..3229895	+	282	37522601	-	glr3032	-	oxidoreductase
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.