IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2821	 55.22	-1	2999221..3002802	+	1193	37522390	-	glr2821	-	WD repeat-containing protein
2822	 62.14	0	3002869..3004458	-	529	37522391	-	gll2822	-	hypothetical protein
2823	 61.08	0	3004501..3005502	-	333	37522392	-	gll2823	-	hypothetical protein
2824	 65.69	0	3005543..3007081	-	512	37522393	-	gll2824	-	cholesterol oxidase
2825	 66.46	0	3007113..3008102	-	329	37522394	-	gll2825	-	quinone oxidoreductase
2826	 64.57	0	3008150..3009055	-	301	37522395	-	gll2826	-	hypothetical protein
2827	 65.65	0	3009060..3010334	-	424	37522396	-	gll2827	-	hypothetical protein
2828	 65.92	0	3010360..3011031	-	223	37522397	-	gll2828	-	hypothetical protein
2829	 67.61	+1	3011066..3014665	-	1199	37522398	-	gll2829	-	polyketide synthase
2830	 63.91	0	3014653..3014979	-	108	37522399	-	gll2830	-	polyketide synthase
2831	 65.11	0	3014976..3016643	-	555	37522400	-	gll2831	-	hypothetical protein
2832	 66.51	0	3016690..3019299	-	869	37522401	-	gll2832	-	hypothetical protein
2833	 62.57	0	3019311..3020066	-	251	37522402	-	gll2833	-	oxidoreductase
2834	 56.38	-1	3020114..3020998	-	294	37522403	-	gll2834	-	alpha-acetolactate decarboxylase
2835	 46.91	-2	3021141..3021965	-	274	37522404	-	gll2835	-	decarboxylase
2836	 64.05	0	3022041..3023033	-	330	37522405	-	gll2836	-	alcohol dehydrogenase
2837	 62.87	0	3023073..3023309	-	78	37522406	-	gsl2837	-	hypothetical protein
2838	 61.20	0	3023392..3024141	-	249	37522407	-	gll2838	-	short chain dehydrogenase
2839	 61.92	0	3024193..3027372	-	1059	37522408	-	gll2839	-	RND multidrug efflux transporter
2840	 65.13	0	3027409..3028641	-	410	37522409	-	gll2840	-	hypothetical protein
2841	 64.84	0	3028663..3029646	-	327	37522410	-	gll2841	-	oxidoreductase
2842	 60.37	0	3030417..3030845	+	142	37522411	-	glr2842	-	hypothetical protein
2843	 56.77	-1	3030846..3031037	+	63	37522412	-	gsr2843	-	hypothetical protein
2844	 61.35	0	3031051..3032046	+	331	37522413	-	glr2844	-	pyruvate dehydrogenase E1 alpha-subunit
2845	 63.03	0	3032099..3032455	+	118	37522414	-	glr2845	-	aspartate alpha-decarboxylase
2846	 59.15	0	3032535..3033518	+	327	37522415	-	glr2846	-	pyruvate dehydrogenase E1 beta-subunit
2847	 50.57	-2	3033519..3033779	+	86	37522416	-	gsr2847	-	hypothetical protein
2848	 62.97	0	3033832..3037839	+	1335	37522417	-	glr2848	-	glycolipid synthase
2849	 65.05	0	3037935..3040349	+	804	37522418	-	glr2849	-	hypothetical protein
2850	 63.18	0	3040687..3041460	+	257	37522419	-	glr2850	-	thioesterase
2851	 62.58	0	3041447..3042253	+	268	37522420	-	glr2851	-	hypothetical protein
2852	 63.26	0	3042296..3043468	-	390	37522421	-	gll2852	-	beta-ketoacyl synthase
2853	 56.96	-1	3043489..3044889	-	466	37522422	-	gll2853	-	beta-ketoacyl synthase
2854	 49.24	-2	3044938..3045201	-	87	37522423	-	gsl2854	-	acyl carrier protein
2855	 46.07	-2	3045309..3045779	-	156	37522424	-	gll2855	-	MarR family transcriptional regulator
2856	 51.43	-2	3045772..3046677	-	301	37522425	-	gll2856	-	LysR family transcriptional regulator
2857	 62.63	0	3047009..3047305	-	98	37522426	-	gsl2857	-	hypothetical protein
2858	 63.94	0	3047343..3048149	-	268	37522427	-	gll2858	-	oxidoreductase
2859	 67.07	+1	3048442..3049443	+	333	37522428	-	glr2859	-	oxidoreductase
2860	 67.29	+1	3049469..3050434	-	321	37522429	-	gll2860	-	LysR family transcriptional regulator
2861	 65.94	0	3050703..3051389	-	228	37522430	-	gll2861	-	hypothetical protein
2862	 63.97	0	3051586..3054594	+	1002	37522431	-	glr2862	-	hypothetical protein
2863	 56.57	-1	3054669..3055064	+	131	37522432	-	glr2863	-	hypothetical protein
2864	 63.40	0	3055116..3056096	-	326	37522433	accA	gvip389	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2865	 63.71	0	3056204..3057385	+	393	37522434	-	glr2865	-	glycosyltransferase
2866	 65.26	0	3057506..3058357	-	283	37522435	desC	gvip390	-	delta 9 acyl-lipid desaturase
2867	 61.51	0	3058545..3059708	-	387	37522436	-	gll2867	-	hypothetical protein
2868	 60.95	0	3061025..3062791	-	588	37522437	-	gll2868	-	HlyB/MsbA family ABC transporter
2869	 64.00	0	3062802..3063701	-	299	37522438	-	gll2869	-	hypothetical protein
2870	 60.10	0	3063796..3064191	-	131	37522439	-	gll2870	-	hypothetical protein
2871	 67.33	+1	3064271..3065623	+	450	37522440	-	glr2871	-	hypothetical protein
2872	 57.69	0	3065646..3066425	-	259	37522441	-	gll2872	-	hypothetical protein
2873	 61.22	0	3067122..3067598	-	158	37522442	psbU	gvip391	-	hypothetical protein
2874	 65.94	0	3067957..3069480	-	507	37522443	-	gll2874	-	hypothetical protein
2875	 64.85	0	3069544..3070533	-	329	37522444	pyrB	gvip392	-	aspartate carbamoyltransferase catalytic subunit
2876	 62.50	0	3070635..3070970	+	111	37522445	-	glr2876	-	hypothetical protein
2877	 58.14	0	3071035..3071292	-	85	37522446	-	gsl2877	-	hypothetical protein
2878	 66.96	+1	3071366..3072394	+	342	37522447	-	glr2878	-	hypothetical protein
2879	 68.23	+1	3072376..3073080	+	234	37522448	-	glr2879	-	hypothetical protein
2880	 63.22	0	3073077..3073511	-	144	37522449	-	gll2880	-	hypothetical protein
2881	 62.02	0	3073513..3073899	-	128	37522450	ycf35	gvip393	-	hypothetical protein
2882	 58.71	0	3073928..3074128	-	66	37522451	-	gsl2882	-	hypothetical protein
2883	 64.25	0	3074339..3074875	+	178	37522452	-	glr2883	-	hypothetical protein
2884	 68.44	+1	3074872..3075492	+	206	37522453	ruvA	gvip394	-	Holliday junction DNA helicase motor protein
2885	 64.76	0	3075494..3076699	-	401	37522454	-	gll2885	-	hypothetical protein
2886	 61.52	0	3076742..3078625	+	627	37522455	thrS	gvip395	-	threonyl-tRNA synthetase
2887	 63.91	0	3078699..3079787	+	362	37522456	-	glr2887	-	hypothetical protein
2888	 65.87	0	3079825..3083070	-	1081	37522457	-	gll2888	-	WD repeat-containing protein
2889	 64.24	0	3083198..3084187	+	329	37522458	-	glr2889	-	hypothetical protein
2890	 41.48	-2	3084462..3084854	-	130	37522459	-	gll2890	-	ketosteroid isomerase
2891	 65.85	0	3085034..3085888	-	284	37522460	-	gll2891	-	hypothetical protein
2892	 65.14	0	3085915..3087288	-	457	37522461	-	gll2892	-	hypothetical protein
2893	 65.08	0	3087758..3088009	+	83	37522462	-	gsr2893	-	hypothetical protein
2894	 67.01	+1	3088511..3090520	+	669	37522463	-	glr2894	-	hypothetical protein
2895	 66.16	0	3090517..3093453	+	978	37522464	-	glr2895	-	hypothetical protein
2896	 61.54	0	3093516..3093827	+	103	37522465	groES	gvip396	-	co-chaperonin GroES
2897	 62.64	0	3093866..3095527	+	553	37522466	groEL	gvip397	-	chaperonin GroEL
2898	 62.36	0	3095649..3096368	+	239	37522467	-	glr2898	-	ABC transporter ATP-binding protein
2899	 56.47	-1	3096390..3096791	-	133	37522468	-	gll2899	-	hypothetical protein
2900	 51.64	-2	3096778..3096990	-	70	37522469	-	gsl2900	-	hypothetical protein
2901	 58.06	0	3097149..3097601	-	150	37522470	-	gll2901	-	hypothetical protein
2902	 65.35	0	3097703..3098767	-	354	37522471	-	gll2902	-	hypothetical protein
2903	 62.03	0	3098805..3099041	-	78	37522472	-	gsl2903	-	hypothetical protein
2904	 63.59	0	3099191..3101137	+	648	37522473	-	glr2904	-	hypothetical protein
2905	 63.04	0	3101389..3102930	-	513	37522474	atpA	gvip398	-	F0F1 ATP synthase subunit alpha
2906	 61.11	0	3102947..3103504	-	185	37522475	atpD	gvip399	-	ATP synthase delta chain of CF(1)
2907	 64.96	0	3103508..3104035	-	175	37522476	atpF	gvip400	-	F0F1 ATP synthase subunit B
2908	 64.38	0	3104035..3104559	-	174	37522477	atpG	gvip401	-	F0F1 ATP synthase subunit B'
2909	 63.45	0	3104582..3104830	-	82	37522478	atpH	gvip402	-	F0F1 ATP synthase subunit C
2910	 56.01	-1	3104880..3105620	-	246	37522479	atpI	gvip403	-	F0F1 ATP synthase subunit A
2911	 55.06	-1	3105648..3106052	-	134	37522480	atp1	gvip404	-	ATP synthase protein I
2912	 58.62	0	3106204..3106377	-	57	37522481	-	gsl2912	-	hypothetical protein
2913	 68.32	+1	3106421..3106783	+	120	37522482	-	glr2913	-	hypothetical protein
2914	 67.00	+1	3106830..3107435	+	201	37522483	-	glr2914	-	hypothetical protein
2915	 55.34	-1	3107542..3107850	+	102	37522484	-	glr2915	-	hypothetical protein
2916	 66.16	0	3107813..3108604	-	263	37522485	-	gll2916	-	hypothetical protein
2917	 54.13	-1	3108987..3110366	+	459	37522486	-	glr2917	-	hypothetical protein
2918	 51.59	-2	3110354..3111388	+	344	37522487	-	glr2918	-	hypothetical protein
2919	 63.77	0	3111474..3114167	+	897	37522488	valS	gvip405	-	valyl-tRNA synthetase
2920	 65.75	0	3115439..3116860	-	473	37522489	-	gll2920	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.