IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2770	 60.32	0	2948719..2949033	-	104	37522339	-	gll2770	-	hypothetical protein
2771	 65.58	0	2949193..2951400	-	735	37522340	-	gll2771	-	catalase/peroxidase
2772	 62.28	0	2951907..2952362	+	151	37522341	-	glr2772	-	hypothetical protein
2773	 59.64	0	2952413..2952853	+	146	37522342	-	glr2773	-	hypothetical protein
2774	 66.81	0	2952863..2954290	-	475	37522343	-	gll2774	-	hypothetical protein
2775	 62.91	0	2954354..2955709	+	451	37522344	-	glr2775	-	hypothetical protein
2776	 68.85	+1	2956059..2956745	-	228	37522345	-	gll2776	-	hydrolase
2777	 65.09	0	2956838..2957596	+	252	37522346	-	glr2777	-	hypothetical protein
2778	 62.37	0	2957598..2959085	-	495	37522347	-	gll2778	-	hypothetical protein
2779	 64.25	0	2959165..2960445	+	426	37522348	purD	gvip382	-	phosphoribosylamine--glycine ligase
2780	 57.21	-1	2960661..2961464	-	267	37522349	-	gll2780	-	hypothetical protein
2781	 58.73	0	2961532..2962161	+	209	37522350	-	glr2781	-	hypothetical protein
2782	 57.78	0	2962256..2962615	-	119	37522351	-	gll2782	-	cytochrome; CytM-like protein
2783	 63.60	0	2962693..2963475	-	260	37522352	-	gll2783	-	glutamine-binding protein
2784	 63.89	0	2963478..2963837	-	119	37522353	rplT	gvip383	-	50S ribosomal protein L20
2785	 61.62	0	2963866..2964063	-	65	37522354	rpl35	gvip384	-	50S ribosomal protein L35
2786	 62.04	0	2964154..2964564	-	136	37522355	-	gll2786	-	hypothetical protein
2787	 66.14	0	2964563..2965900	+	445	37522356	-	glr2787	-	hypothetical protein
2788	 62.61	0	2965938..2968451	+	837	37522357	-	glr2788	-	aminopeptidase
2789	 61.97	0	2968489..2969787	+	432	37522358	-	glr2789	-	hypothetical protein
2790	 59.93	0	2969974..2970507	+	177	37522359	-	glr2790	-	hypoxanthine phosphoribosyltransferase
2791	 65.81	0	2970495..2971196	+	233	37522360	ispD	glr2791	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2792	 64.45	0	2971193..2971870	+	225	37522361	-	glr2792	-	hypothetical protein
2793	 62.16	0	2971923..2972255	-	110	37522362	-	gll2793	-	hypothetical protein
2794	 59.86	0	2972705..2973409	+	234	37522363	-	glr2794	-	hypothetical protein
2795	 68.51	+1	2973462..2974490	-	342	37522364	trpD	gvip385	-	anthranilate phosphoribosyltransferase
2796	 67.15	+1	2974487..2975512	-	341	37522365	-	gll2796	-	hypothetical protein
2797	 61.39	0	2975509..2976417	-	302	37522366	-	gll2797	-	glycosyltransferase
2798	 63.12	0	2976535..2977239	+	234	37522367	-	glr2798	-	two-component response regulator
2799	 61.95	0	2977341..2977976	+	211	37522368	-	glr2799	-	CRP family transcriptional regulator
2800	 57.36	0	2978125..2978457	+	110	37522369	-	glr2800	-	hypothetical protein
2801	 62.26	0	2978830..2980191	+	453	37522370	-	glr2801	-	hypothetical protein
2802	 64.21	0	2980250..2980696	+	148	37522371	-	glr2802	-	hypothetical protein
2803	 57.91	0	2980921..2981331	-	136	37522372	-	gll2803	-	hypothetical protein
2804	 62.52	0	2981581..2983218	-	545	37522373	ilvB	gvip386	-	acetolactate synthase
2805	 64.51	0	2983215..2984603	-	462	37522374	-	gll2805	-	succinate-semialdehyde dehydrogenase
2806	 61.37	0	2984809..2986998	+	729	37522375	-	glr2806	-	putative phycobiliprotein linker
2807	 58.33	0	2987101..2987244	+	47	37522376	psbK	gvip387	-	photosystem II reaction center protein K
2808	 63.23	0	2987307..2987975	-	222	37522377	-	gll2808	-	hypothetical protein
2809	 66.55	0	2988219..2989079	+	286	37522378	-	glr2809	-	hypothetical protein
2810	 63.22	0	2989067..2989414	-	115	37522379	-	gll2810	-	hypothetical protein
2811	 66.23	0	2989423..2990574	+	383	37522380	-	glr2811	-	hypothetical protein
2812	 64.38	0	2990743..2992755	+	670	37522381	fus	gvip388	-	elongation factor G
2813	 60.51	0	2992921..2993472	+	183	37522382	-	glr2813	-	protease
2814	 55.00	-1	2993959..2994378	+	139	37522383	-	glr2814	-	hypothetical protein
2815	 58.44	0	2994671..2994913	+	80	37522384	-	gsr2815	-	hypothetical protein
2816	 64.17	0	2995015..2995695	+	226	37522385	-	glr2816	-	O-methyltransferase
2817	 56.81	-1	2996055..2996612	+	185	37522386	-	glr2817	-	hydroxylase
2818	 60.08	0	2996646..2997146	-	166	37522387	-	gll2818	-	gluconokinase
2819	 59.52	0	2997200..2997745	-	181	37522388	-	gll2819	-	hypothetical protein
2820	 64.68	0	2997833..2998837	+	334	37522389	-	glr2820	-	UDP-glucose 4-epimerase
2821	 55.22	-1	2999221..3002802	+	1193	37522390	-	glr2821	-	WD repeat-containing protein
2822	 62.14	0	3002869..3004458	-	529	37522391	-	gll2822	-	hypothetical protein
2823	 61.08	0	3004501..3005502	-	333	37522392	-	gll2823	-	hypothetical protein
2824	 65.69	0	3005543..3007081	-	512	37522393	-	gll2824	-	cholesterol oxidase
2825	 66.46	0	3007113..3008102	-	329	37522394	-	gll2825	-	quinone oxidoreductase
2826	 64.57	0	3008150..3009055	-	301	37522395	-	gll2826	-	hypothetical protein
2827	 65.65	0	3009060..3010334	-	424	37522396	-	gll2827	-	hypothetical protein
2828	 65.92	0	3010360..3011031	-	223	37522397	-	gll2828	-	hypothetical protein
2829	 67.61	+1	3011066..3014665	-	1199	37522398	-	gll2829	-	polyketide synthase
2830	 63.91	0	3014653..3014979	-	108	37522399	-	gll2830	-	polyketide synthase
2831	 65.11	0	3014976..3016643	-	555	37522400	-	gll2831	-	hypothetical protein
2832	 66.51	0	3016690..3019299	-	869	37522401	-	gll2832	-	hypothetical protein
2833	 62.57	0	3019311..3020066	-	251	37522402	-	gll2833	-	oxidoreductase
2834	 56.38	-1	3020114..3020998	-	294	37522403	-	gll2834	-	alpha-acetolactate decarboxylase
2835	 46.91	-2	3021141..3021965	-	274	37522404	-	gll2835	-	decarboxylase
2836	 64.05	0	3022041..3023033	-	330	37522405	-	gll2836	-	alcohol dehydrogenase
2837	 62.87	0	3023073..3023309	-	78	37522406	-	gsl2837	-	hypothetical protein
2838	 61.20	0	3023392..3024141	-	249	37522407	-	gll2838	-	short chain dehydrogenase
2839	 61.92	0	3024193..3027372	-	1059	37522408	-	gll2839	-	RND multidrug efflux transporter
2840	 65.13	0	3027409..3028641	-	410	37522409	-	gll2840	-	hypothetical protein
2841	 64.84	0	3028663..3029646	-	327	37522410	-	gll2841	-	oxidoreductase
2842	 60.37	0	3030417..3030845	+	142	37522411	-	glr2842	-	hypothetical protein
2843	 56.77	-1	3030846..3031037	+	63	37522412	-	gsr2843	-	hypothetical protein
2844	 61.35	0	3031051..3032046	+	331	37522413	-	glr2844	-	pyruvate dehydrogenase E1 alpha-subunit
2845	 63.03	0	3032099..3032455	+	118	37522414	-	glr2845	-	aspartate alpha-decarboxylase
2846	 59.15	0	3032535..3033518	+	327	37522415	-	glr2846	-	pyruvate dehydrogenase E1 beta-subunit
2847	 50.57	-2	3033519..3033779	+	86	37522416	-	gsr2847	-	hypothetical protein
2848	 62.97	0	3033832..3037839	+	1335	37522417	-	glr2848	-	glycolipid synthase
2849	 65.05	0	3037935..3040349	+	804	37522418	-	glr2849	-	hypothetical protein
2850	 63.18	0	3040687..3041460	+	257	37522419	-	glr2850	-	thioesterase
2851	 62.58	0	3041447..3042253	+	268	37522420	-	glr2851	-	hypothetical protein
2852	 63.26	0	3042296..3043468	-	390	37522421	-	gll2852	-	beta-ketoacyl synthase
2853	 56.96	-1	3043489..3044889	-	466	37522422	-	gll2853	-	beta-ketoacyl synthase
2854	 49.24	-2	3044938..3045201	-	87	37522423	-	gsl2854	-	acyl carrier protein
2855	 46.07	-2	3045309..3045779	-	156	37522424	-	gll2855	-	MarR family transcriptional regulator
2856	 51.43	-2	3045772..3046677	-	301	37522425	-	gll2856	-	LysR family transcriptional regulator
2857	 62.63	0	3047009..3047305	-	98	37522426	-	gsl2857	-	hypothetical protein
2858	 63.94	0	3047343..3048149	-	268	37522427	-	gll2858	-	oxidoreductase
2859	 67.07	+1	3048442..3049443	+	333	37522428	-	glr2859	-	oxidoreductase
2860	 67.29	+1	3049469..3050434	-	321	37522429	-	gll2860	-	LysR family transcriptional regulator
2861	 65.94	0	3050703..3051389	-	228	37522430	-	gll2861	-	hypothetical protein
2862	 63.97	0	3051586..3054594	+	1002	37522431	-	glr2862	-	hypothetical protein
2863	 56.57	-1	3054669..3055064	+	131	37522432	-	glr2863	-	hypothetical protein
2864	 63.40	0	3055116..3056096	-	326	37522433	accA	gvip389	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2865	 63.71	0	3056204..3057385	+	393	37522434	-	glr2865	-	glycosyltransferase
2866	 65.26	0	3057506..3058357	-	283	37522435	desC	gvip390	-	delta 9 acyl-lipid desaturase
2867	 61.51	0	3058545..3059708	-	387	37522436	-	gll2867	-	hypothetical protein
2868	 60.95	0	3061025..3062791	-	588	37522437	-	gll2868	-	HlyB/MsbA family ABC transporter
2869	 64.00	0	3062802..3063701	-	299	37522438	-	gll2869	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.