IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2742	 58.30	0	2911776..2913137	+	453	37522311	-	glr2742	-	putative transposase
2743	 64.46	0	2913668..2915434	-	588	37522312	-	gll2743	-	hypothetical protein
2744	 62.58	0	2915401..2916453	-	350	37522313	-	gll2744	-	hypothetical protein
2745	 62.86	0	2916502..2916816	-	104	37522314	-	gll2745	-	hypothetical protein
2746	 60.39	0	2917415..2918083	+	222	37522315	-	glr2746	-	hypothetical protein
2747	 60.27	0	2918275..2918790	+	171	37522316	-	glr2747	-	adenine phosphoribosyltransferase
2748	 59.90	0	2918792..2921068	+	758	37522317	-	glr2748	-	(p)ppGpp 3'-pyrophosphohydrolase
2749	 65.51	0	2921186..2925076	+	1296	37522318	-	glr2749	-	two-component hybrid sensor and regulator
2750	 63.96	0	2925182..2926069	+	295	37522319	-	glr2750	-	hypothetical protein
2751	 60.02	0	2926701..2927648	+	315	37522320	-	glr2751	-	hypothetical protein
2752	 59.19	0	2927843..2928805	+	320	37522321	-	glr2752	-	hypothetical protein
2753	 54.04	-1	2928989..2929384	+	131	37522322	-	glr2753	-	hypothetical protein
2754	 58.77	0	2929963..2930760	-	265	37522323	-	gll2754	-	hypothetical protein
2755	 63.62	0	2931165..2934155	+	996	37522324	putA	gvip380	-	1-pyrroline-5-carboxylate dehydrogenase
2756	 46.98	-2	2934248..2934628	-	126	37522325	-	gll2756	-	hypothetical protein
2757	 67.41	+1	2935256..2937412	-	718	37522326	-	gll2757	-	hypothetical protein
2758	 65.06	0	2937548..2938792	+	414	37522327	trpB	gvip381	-	tryptophan synthase subunit beta
2759	 64.50	0	2938916..2940022	+	368	37522328	-	glr2759	-	hypothetical protein
2760	 64.17	0	2940019..2940459	-	146	37522329	-	gll2760	-	hypothetical protein
2761	 59.21	0	2940546..2941001	+	151	37522330	-	glr2761	-	MarR family transcriptional regulator
2762	 63.89	0	2941006..2941329	-	107	37522331	-	gll2762	-	hypothetical protein
2763	 60.42	0	2941406..2943214	+	602	37522332	-	glr2763	-	GTP-binding protein LepA
2764	 58.04	0	2943413..2945092	-	559	37522333	-	gll2764	-	hypothetical protein
2765	 63.26	0	2945417..2945944	-	175	37522334	-	gll2765	-	NADH-dependent FMN reductase
2766	 62.22	0	2946076..2946525	-	149	37522335	-	gll2766	-	hypothetical protein
2767	 62.45	0	2946503..2947285	-	260	37522336	-	gll2767	-	hypothetical protein
2768	 60.38	0	2947350..2947874	-	174	37522337	-	gll2768	-	hypothetical protein
2769	 65.64	0	2948409..2948798	+	129	37522338	-	glr2769	-	hypothetical protein
2770	 60.32	0	2948719..2949033	-	104	37522339	-	gll2770	-	hypothetical protein
2771	 65.58	0	2949193..2951400	-	735	37522340	-	gll2771	-	catalase/peroxidase
2772	 62.28	0	2951907..2952362	+	151	37522341	-	glr2772	-	hypothetical protein
2773	 59.64	0	2952413..2952853	+	146	37522342	-	glr2773	-	hypothetical protein
2774	 66.81	0	2952863..2954290	-	475	37522343	-	gll2774	-	hypothetical protein
2775	 62.91	0	2954354..2955709	+	451	37522344	-	glr2775	-	hypothetical protein
2776	 68.85	+1	2956059..2956745	-	228	37522345	-	gll2776	-	hydrolase
2777	 65.09	0	2956838..2957596	+	252	37522346	-	glr2777	-	hypothetical protein
2778	 62.37	0	2957598..2959085	-	495	37522347	-	gll2778	-	hypothetical protein
2779	 64.25	0	2959165..2960445	+	426	37522348	purD	gvip382	-	phosphoribosylamine--glycine ligase
2780	 57.21	-1	2960661..2961464	-	267	37522349	-	gll2780	-	hypothetical protein
2781	 58.73	0	2961532..2962161	+	209	37522350	-	glr2781	-	hypothetical protein
2782	 57.78	0	2962256..2962615	-	119	37522351	-	gll2782	-	cytochrome; CytM-like protein
2783	 63.60	0	2962693..2963475	-	260	37522352	-	gll2783	-	glutamine-binding protein
2784	 63.89	0	2963478..2963837	-	119	37522353	rplT	gvip383	-	50S ribosomal protein L20
2785	 61.62	0	2963866..2964063	-	65	37522354	rpl35	gvip384	-	50S ribosomal protein L35
2786	 62.04	0	2964154..2964564	-	136	37522355	-	gll2786	-	hypothetical protein
2787	 66.14	0	2964563..2965900	+	445	37522356	-	glr2787	-	hypothetical protein
2788	 62.61	0	2965938..2968451	+	837	37522357	-	glr2788	-	aminopeptidase
2789	 61.97	0	2968489..2969787	+	432	37522358	-	glr2789	-	hypothetical protein
2790	 59.93	0	2969974..2970507	+	177	37522359	-	glr2790	-	hypoxanthine phosphoribosyltransferase
2791	 65.81	0	2970495..2971196	+	233	37522360	ispD	glr2791	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2792	 64.45	0	2971193..2971870	+	225	37522361	-	glr2792	-	hypothetical protein
2793	 62.16	0	2971923..2972255	-	110	37522362	-	gll2793	-	hypothetical protein
2794	 59.86	0	2972705..2973409	+	234	37522363	-	glr2794	-	hypothetical protein
2795	 68.51	+1	2973462..2974490	-	342	37522364	trpD	gvip385	-	anthranilate phosphoribosyltransferase
2796	 67.15	+1	2974487..2975512	-	341	37522365	-	gll2796	-	hypothetical protein
2797	 61.39	0	2975509..2976417	-	302	37522366	-	gll2797	-	glycosyltransferase
2798	 63.12	0	2976535..2977239	+	234	37522367	-	glr2798	-	two-component response regulator
2799	 61.95	0	2977341..2977976	+	211	37522368	-	glr2799	-	CRP family transcriptional regulator
2800	 57.36	0	2978125..2978457	+	110	37522369	-	glr2800	-	hypothetical protein
2801	 62.26	0	2978830..2980191	+	453	37522370	-	glr2801	-	hypothetical protein
2802	 64.21	0	2980250..2980696	+	148	37522371	-	glr2802	-	hypothetical protein
2803	 57.91	0	2980921..2981331	-	136	37522372	-	gll2803	-	hypothetical protein
2804	 62.52	0	2981581..2983218	-	545	37522373	ilvB	gvip386	-	acetolactate synthase
2805	 64.51	0	2983215..2984603	-	462	37522374	-	gll2805	-	succinate-semialdehyde dehydrogenase
2806	 61.37	0	2984809..2986998	+	729	37522375	-	glr2806	-	putative phycobiliprotein linker
2807	 58.33	0	2987101..2987244	+	47	37522376	psbK	gvip387	-	photosystem II reaction center protein K
2808	 63.23	0	2987307..2987975	-	222	37522377	-	gll2808	-	hypothetical protein
2809	 66.55	0	2988219..2989079	+	286	37522378	-	glr2809	-	hypothetical protein
2810	 63.22	0	2989067..2989414	-	115	37522379	-	gll2810	-	hypothetical protein
2811	 66.23	0	2989423..2990574	+	383	37522380	-	glr2811	-	hypothetical protein
2812	 64.38	0	2990743..2992755	+	670	37522381	fus	gvip388	-	elongation factor G
2813	 60.51	0	2992921..2993472	+	183	37522382	-	glr2813	-	protease
2814	 55.00	-1	2993959..2994378	+	139	37522383	-	glr2814	-	hypothetical protein
2815	 58.44	0	2994671..2994913	+	80	37522384	-	gsr2815	-	hypothetical protein
2816	 64.17	0	2995015..2995695	+	226	37522385	-	glr2816	-	O-methyltransferase
2817	 56.81	-1	2996055..2996612	+	185	37522386	-	glr2817	-	hydroxylase
2818	 60.08	0	2996646..2997146	-	166	37522387	-	gll2818	-	gluconokinase
2819	 59.52	0	2997200..2997745	-	181	37522388	-	gll2819	-	hypothetical protein
2820	 64.68	0	2997833..2998837	+	334	37522389	-	glr2820	-	UDP-glucose 4-epimerase
2821	 55.22	-1	2999221..3002802	+	1193	37522390	-	glr2821	-	WD repeat-containing protein
2822	 62.14	0	3002869..3004458	-	529	37522391	-	gll2822	-	hypothetical protein
2823	 61.08	0	3004501..3005502	-	333	37522392	-	gll2823	-	hypothetical protein
2824	 65.69	0	3005543..3007081	-	512	37522393	-	gll2824	-	cholesterol oxidase
2825	 66.46	0	3007113..3008102	-	329	37522394	-	gll2825	-	quinone oxidoreductase
2826	 64.57	0	3008150..3009055	-	301	37522395	-	gll2826	-	hypothetical protein
2827	 65.65	0	3009060..3010334	-	424	37522396	-	gll2827	-	hypothetical protein
2828	 65.92	0	3010360..3011031	-	223	37522397	-	gll2828	-	hypothetical protein
2829	 67.61	+1	3011066..3014665	-	1199	37522398	-	gll2829	-	polyketide synthase
2830	 63.91	0	3014653..3014979	-	108	37522399	-	gll2830	-	polyketide synthase
2831	 65.11	0	3014976..3016643	-	555	37522400	-	gll2831	-	hypothetical protein
2832	 66.51	0	3016690..3019299	-	869	37522401	-	gll2832	-	hypothetical protein
2833	 62.57	0	3019311..3020066	-	251	37522402	-	gll2833	-	oxidoreductase
2834	 56.38	-1	3020114..3020998	-	294	37522403	-	gll2834	-	alpha-acetolactate decarboxylase
2835	 46.91	-2	3021141..3021965	-	274	37522404	-	gll2835	-	decarboxylase
2836	 64.05	0	3022041..3023033	-	330	37522405	-	gll2836	-	alcohol dehydrogenase
2837	 62.87	0	3023073..3023309	-	78	37522406	-	gsl2837	-	hypothetical protein
2838	 61.20	0	3023392..3024141	-	249	37522407	-	gll2838	-	short chain dehydrogenase
2839	 61.92	0	3024193..3027372	-	1059	37522408	-	gll2839	-	RND multidrug efflux transporter
2840	 65.13	0	3027409..3028641	-	410	37522409	-	gll2840	-	hypothetical protein
2841	 64.84	0	3028663..3029646	-	327	37522410	-	gll2841	-	oxidoreductase
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.