IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
206	 47.83	-2	198027..198509	-	160	37519775	-	gll0206	-	hypothetical protein
207	 58.52	0	198509..199576	-	355	37519776	-	gll0207	-	hypothetical protein
208	 63.27	0	200444..200884	-	146	37519777	-	gll0208	-	hypothetical protein
209	 50.38	-2	202099..203154	-	351	37519778	-	gll0209	-	putative transposase
210	 41.39	-2	203925..204197	-	90	37519779	-	gsl0210	-	hypothetical protein
211	 59.52	0	204221..205507	-	428	37519780	-	gll0211	-	hypothetical protein
212	 56.75	-1	206315..207322	-	335	37519781	-	gll0212	-	hypothetical protein
213	 60.67	0	208031..213952	-	1973	37519782	-	gll0213	-	hypothetical protein
214	 65.71	0	214608..216812	+	734	37519783	-	glr0214	-	hypothetical protein
215	 61.99	0	216889..218406	+	505	37519784	chlB	gvip017	-	light-independent protochlorophyllide reductase subunit B
216	 64.81	0	218507..218830	+	107	37519785	-	glr0216	-	hypothetical protein
217	 64.91	0	218835..219743	-	302	37519786	ribF	gvip018	-	riboflavin biosynthesis protein
218	 62.76	0	220048..222123	+	691	37519787	ndhF	gvip019	-	NAD(P)H-quinone oxidoreductase subunit F
219	 61.73	0	222130..223710	+	526	37519788	ndhD	gvip020	-	NAD(P)H-quinone oxidoreductase subunit 4
220	 60.93	0	224118..225302	+	394	37519789	-	glr0220	-	hypothetical protein
221	 65.26	0	225309..226445	+	378	37519790	-	glr0221	-	hypothetical protein
222	 69.93	+1	226442..227146	-	234	37519791	-	gll0222	-	two-component response regulator
223	 69.01	+1	227311..228333	+	340	37519792	-	glr0223	-	hypothetical protein
224	 63.39	0	228460..229038	+	192	37519793	-	glr0224	-	hypothetical protein
225	 57.41	0	229416..229631	-	71	37519794	-	gsl0225	-	hypothetical protein
226	 62.87	0	229628..230128	-	166	37519795	-	gll0226	-	hypothetical protein
227	 64.27	0	230131..230673	+	180	37519796	-	glr0227	-	hypothetical protein
228	 52.38	-2	230721..231266	-	181	37519797	-	gll0228	-	hypothetical protein
229	 65.08	0	231619..231807	-	62	37519798	-	gsl0229	-	hypothetical protein
230	 64.04	0	232113..234854	+	913	37519799	-	glr0230	-	hypothetical protein
231	 51.35	-2	234884..235732	+	282	37519800	-	glr0231	-	hypothetical protein
232	 49.55	-2	235816..236259	+	147	37519801	-	glr0232	-	hypothetical protein
233	 44.76	-2	236290..237138	+	282	37519802	-	glr0233	-	hypothetical protein
234	 64.73	0	237352..240447	-	1031	37519803	-	gll0234	-	AcrB/AcrD/AcrF family protein
235	 45.39	-2	240748..240888	-	46	37519804	-	gsl0235	-	hypothetical protein
236	 59.87	0	240904..241212	-	102	37519805	-	gll0236	-	hypothetical protein
237	 64.50	0	241321..244599	+	1092	37519806	-	glr0237	-	hypothetical protein
238	 62.40	0	244596..245111	-	171	37519807	-	gll0238	-	hypothetical protein
239	 60.00	0	245157..245561	-	134	37519808	-	gll0239	-	hypothetical protein
240	 65.85	0	245577..245942	-	121	37519809	-	gll0240	-	hypothetical protein
241	 68.85	+1	246120..246623	-	167	37519810	-	gll0241	-	hypothetical protein
242	 68.81	+1	246745..248469	-	574	37519811	-	gll0242	-	cell division control protein CDC48-like protein
243	 65.37	0	248599..249987	+	462	37519812	-	glr0243	-	hypothetical protein
244	 60.23	0	250109..250807	+	232	37519813	-	glr0244	-	two-component response regulator
245	 64.96	0	250862..251446	-	194	37519814	-	gll0245	-	hypothetical protein
246	 65.90	0	251656..254652	+	998	37519815	-	glr0246	-	glycine dehydrogenase
247	 59.65	0	254760..254987	+	75	37519816	-	gsr0247	-	hypothetical protein
248	 61.70	0	254984..255406	+	140	37519817	-	glr0248	-	hypothetical protein
249	 64.13	0	255600..255875	-	91	37519818	-	gsl0249	-	hypothetical protein
250	 66.27	0	255908..257182	-	424	37519819	-	gll0250	-	hypothetical protein
251	 64.77	0	257515..259839	+	774	37519820	-	glr0251	-	cell division protein FtsY-like protein
252	 64.14	0	260155..260787	-	210	37519821	-	gll0252	-	hypothetical protein
253	 64.87	0	260984..261262	-	92	37519822	-	gsl0253	-	hypothetical protein
254	 66.67	0	261711..262379	-	222	37519823	-	gll0254	-	hydrolase
255	 65.34	0	262472..263524	+	350	37519824	-	glr0255	-	hypothetical protein
256	 55.75	-1	263635..263973	-	112	37519825	glnB	gvip021	-	nitrogen regulatory protein P-II
257	 67.90	+1	264208..265020	+	270	37519826	-	glr0257	-	hypothetical protein
258	 55.16	-1	265023..265439	-	138	37519827	-	gll0258	-	hypothetical protein
259	 58.74	0	265494..266048	-	184	37519828	-	gll0259	-	hypothetical protein
260	 61.31	0	266243..266896	-	217	37519829	-	gll0260	-	hypothetical protein
261	 66.06	0	266974..267633	-	219	37519830	-	gll0261	-	hypothetical protein
262	 68.00	+1	267652..268176	-	174	37519831	-	gll0262	-	hypothetical protein
263	 62.74	0	268250..268885	+	211	37519832	-	glr0263	-	hypothetical protein
264	 65.18	0	268988..272074	+	1028	37519833	-	glr0264	-	AcrB/AcrD/AcrF family protein
265	 55.82	-1	272122..272370	+	82	37519834	-	gsr0265	-	hypothetical protein
266	 58.70	0	272408..272959	-	183	37519835	-	gll0266	-	hypothetical protein
267	 56.22	-1	273559..274659	-	366	37519836	-	gll0267	-	transcriptional regulator
268	 63.32	0	274824..276527	+	567	37519837	-	glr0268	-	multidrug ABC transporter
269	 59.41	0	276568..277215	+	215	37519838	-	glr0269	-	hypothetical protein
270	 60.99	0	277262..277684	+	140	37519839	-	glr0270	-	hypothetical protein
271	 65.73	0	277718..279418	-	566	37519840	recN	gvip022	-	DNA repair protein
272	 47.95	-2	279529..279870	-	113	37519841	-	gll0272	-	hypothetical protein
273	 57.19	-1	281155..281829	+	224	37519842	-	glr0273	-	two-component response regulator
274	 61.69	0	281893..283740	-	615	37519843	-	gll0274	-	hypothetical protein
275	 63.49	0	283991..287011	+	1006	37519844	-	glr0275	-	hypothetical protein
276	 63.68	0	287066..290083	+	1005	37519845	-	glr0276	-	hypothetical protein
277	 48.54	-2	290361..290669	-	102	37519846	-	gll0277	-	putative transposase
278	 65.57	0	290876..291148	+	90	37519847	-	gsr0278	-	hypothetical protein
279	 68.98	+1	291151..291582	+	143	37519848	-	glr0279	-	hypothetical protein
280	 63.36	0	291854..294058	+	734	37519849	-	glr0280	-	hypothetical protein
281	 65.51	0	294067..294759	+	230	37519850	-	glr0281	-	two-component response regulator
282	 67.43	+1	294756..296066	+	436	37519851	-	glr0282	-	two-component sensor histidine kinase
283	 59.20	0	296050..296946	-	298	37519852	ubiA	gll0283	-	tocopherol phytyltransferase
284	 67.05	+1	297002..297259	-	85	37519853	-	gsl0284	-	hypothetical protein
285	 61.47	0	297229..297459	-	76	37519854	-	gsl0285	-	hypothetical protein
286	 61.11	0	297452..297973	-	173	37519855	ycf37	gvip023	-	hypothetical protein
287	 60.09	0	298070..298738	+	222	37519856	-	glr0287	-	hypothetical protein
288	 59.38	0	298802..299350	+	182	37519857	frr	gvip024	-	ribosome recycling factor
289	 64.76	0	299403..300137	-	244	37519858	-	gll0289	-	cobalt ABC transporter ATP binding protein
290	 68.08	+1	300134..300913	-	259	37519859	-	gll0290	-	cobalt ABC transporter permease
291	 69.81	+1	300910..301227	-	105	37519860	-	gll0291	-	hypothetical protein
292	 65.08	0	301217..301909	-	230	37519861	-	gll0292	-	cobalamin biosynthesis protein CbiM-like protein
293	 64.21	0	302038..302769	+	243	37519862	-	glr0293	-	carbonyl reductase
294	 55.96	-1	302969..303631	-	220	37519863	-	gll0294	-	ThiJ family protein
295	 55.56	-1	303729..304439	+	236	37519864	-	glr0295	-	LuxR family transcriptional regulatory protein
296	 60.91	0	304604..305089	+	161	37519865	-	glr0296	-	acetyltransferase
297	 64.58	0	305135..306043	-	302	37519866	-	gll0297	-	D-alanine--D-alanine ligase
298	 62.78	0	306122..307381	-	419	37519867	ftsZ	gvip025	-	cell division protein FtsZ
299	 61.15	0	307464..308279	-	271	37519868	-	gll0299	-	hypothetical protein
300	 68.59	+1	308371..309408	-	345	37519869	-	gll0300	-	hypothetical protein
301	 63.62	0	309386..309877	+	163	37519870	-	glr0301	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
302	 61.65	0	309882..312275	-	797	37519871	-	gll0302	-	ferric aerobactin receptor
303	 60.37	0	312678..313169	+	163	37519872	-	glr0303	-	hypothetical protein
304	 62.79	0	313212..313934	-	240	37519873	-	gll0304	-	hypothetical protein
305	 64.33	0	314032..315057	-	341	37519874	-	gll0305	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.