IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2356	 64.12	0	2517406..2517915	-	169	37521925	-	gll2356	-	hypothetical protein
2357	 57.14	-1	2517982..2518317	-	111	37521926	-	gll2357	-	hypothetical protein
2358	 61.20	0	2518527..2519897	+	456	37521927	-	glr2358	-	L-serine dehydratase
2359	 66.67	0	2519931..2521460	+	509	37521928	ggt	gvip325	-	gamma-glutamyltranspeptidase
2360	 52.61	-1	2521713..2522018	-	101	37521929	-	gll2360	-	hypothetical protein
2361	 63.44	0	2522040..2523713	-	557	37521930	-	gll2361	-	hypothetical protein
2362	 64.06	0	2524335..2525522	-	395	37521931	thrC	gvip326	-	threonine synthase
2363	 62.23	0	2525606..2526214	+	202	37521932	-	glr2363	-	hypothetical protein
2364	 64.16	0	2526348..2526785	-	145	37521933	-	gll2364	-	hypothetical protein
2365	 63.11	0	2526892..2527200	+	102	37521934	-	glr2365	-	hypothetical protein
2366	 61.68	0	2527212..2527592	+	126	37521935	-	glr2366	-	hypothetical protein
2367	 65.03	0	2527589..2528380	-	263	37521936	-	gll2367	-	deoxyribonuclease
2368	 57.64	0	2528496..2529038	+	180	37521937	-	glr2368	-	hypothetical protein
2369	 60.35	0	2529093..2530502	-	469	37521938	chlN	gvip327	-	light-independent protochlorophyllide reductase subunit N
2370	 58.82	0	2530524..2531351	-	275	37521939	chlL	gvip328	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
2371	 60.22	0	2531485..2531856	+	123	37521940	-	glr2371	-	hypothetical protein
2372	 61.51	0	2531908..2533089	+	393	37521941	ndhH	gvip329	-	NAD(P)H-quinone oxidoreductase subunit H
2373	 68.12	+1	2533086..2533430	-	114	37521942	-	gll2373	-	hypothetical protein
2374	 64.73	0	2533424..2534353	-	309	37521943	-	gll2374	-	hypothetical protein
2375	 61.64	0	2534471..2534908	+	145	37521944	-	glr2375	-	bacterioferritin comigratory protein
2376	 64.17	0	2534912..2535391	+	159	37521945	-	glr2376	-	bacterioferritin comigratory protein
2377	 64.68	0	2535597..2536352	+	251	37521946	-	glr2377	-	D,D-carboxypeptidase
2378	 63.78	0	2536374..2537966	-	530	37521947	gltX	gvip330	-	glutamyl-tRNA synthetase
2379	 64.00	0	2538114..2538863	+	249	37521948	ndhK	gvip331	-	NADH dehydrogenase subunit B
2380	 62.78	0	2538835..2539374	+	179	37521949	ndhJ	gvip332	-	NADH dehydrogenase subunit J
2381	 54.92	-1	2539747..2540010	+	87	37521950	-	gsr2381	-	hypothetical protein
2382	 57.78	0	2540013..2540462	+	149	37521951	-	glr2382	-	plasmid stability protein StbB-like protein
2383	 58.90	0	2540605..2541789	-	394	37521952	ndhH	gvip333	-	NAD(P)H-quinone oxidoreductase subunit H
2384	 65.58	0	2541850..2543040	-	396	37521953	-	gll2384	-	hypothetical protein
2385	 59.11	0	2543086..2543601	+	171	37521954	-	glr2385	-	acetyltransferase
2386	 64.63	0	2543711..2544841	+	376	37521955	-	glr2386	-	sporulation protein SpoIID-like protein
2387	 64.67	0	2544745..2545998	+	417	37521956	-	glr2387	-	hypothetical protein
2388	 62.89	0	2546119..2548368	+	749	37521957	-	glr2388	-	Na/H antiporter
2389	 58.33	0	2548433..2550784	+	783	37521958	-	glr2389	-	hypothetical protein
2390	 67.68	+1	2550809..2551987	+	392	37521959	hisZ	gvip334	-	ATP phosphoribosyltransferase regulatory subunit
2391	 60.13	0	2552069..2553292	+	407	37521960	-	glr2391	-	hypothetical protein
2392	 62.22	0	2553475..2554464	+	329	37521961	-	glr2392	-	hypothetical protein
2393	 54.68	-1	2554474..2554815	-	113	37521962	-	gll2393	-	hypothetical protein
2394	 63.73	0	2554866..2557247	+	793	37521963	-	glr2394	-	ATP-dependent DNA helicase
2395	 56.96	-1	2557294..2557530	+	78	37521964	-	gsr2395	-	hypothetical protein
2396	 56.16	-1	2557514..2557846	+	110	37521965	-	glr2396	-	hypothetical protein
2397	 64.77	0	2557915..2558601	+	228	37521966	-	glr2397	-	heat shock protein DnaJ
2398	 67.70	+1	2558608..2559960	+	450	37521967	murF	gvip335	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase
2399	 63.84	0	2559986..2561011	+	341	37521968	-	glr2399	-	hypothetical protein
2400	 67.81	+1	2561008..2561358	-	116	37521969	-	gll2400	-	hypothetical protein
2401	 62.86	0	2561369..2561473	-	34	37521970	psaM	gvip336	-	photosystem I subunit XII
2402	 61.79	0	2561704..2562339	+	211	37521971	-	glr2402	-	MotA/TolQ/ExbB family proton channel protein
2403	 58.39	0	2562336..2562758	+	140	37521972	-	glr2403	-	biopolymer transport ExbD protein
2404	 65.50	0	2562721..2563491	+	256	37521973	-	glr2404	-	hypothetical protein
2405	 64.01	0	2563502..2564629	-	375	37521974	recF	gvip337	-	recombination protein F
2406	 66.67	0	2564897..2566339	+	480	37521975	radA	gvip338	-	DNA repair protein RadA
2407	 62.30	0	2566405..2566839	+	144	37521976	-	glr2407	-	photomixotrophic growth related protein, PmgA-like protein
2408	 61.59	0	2566872..2567561	+	229	37521977	-	glr2408	-	DNA polymerase related protein
2409	 65.70	0	2567565..2568182	+	205	37521978	-	glr2409	-	pyrrolidone-carboxylate peptidase
2410	 56.08	-1	2568162..2568737	-	191	37521979	-	gll2410	-	hypothetical protein
2411	 63.05	0	2568761..2569534	-	257	37521980	-	gll2411	-	methionine aminopeptidase
2412	 63.51	0	2569597..2571210	-	537	37521981	-	gll2412	-	hypothetical protein
2413	 50.57	-2	2571281..2571628	+	115	37521982	-	glr2413	-	hypothetical protein
2414	 52.63	-1	2571673..2571843	-	56	37521983	-	gsl2414	-	hypothetical protein
2415	 61.33	0	2571847..2572857	+	336	37521984	-	glr2415	-	hypothetical protein
2416	 64.18	0	2572897..2573418	+	173	37521985	-	glr2416	-	aminoglycoside N6'-acetyltransferase
2417	 64.29	0	2573504..2574343	-	279	37521986	-	gll2417	-	hypothetical protein
2418	 63.89	0	2574356..2577520	-	1054	37521987	-	gll2418	-	helicase
2419	 63.77	0	2577590..2578729	-	379	37521988	-	gll2419	-	hypothetical protein
2420	 65.15	0	2578788..2580107	-	439	37521989	-	gll2420	-	hypothetical protein
2421	 67.19	+1	2580163..2580924	-	253	37521990	-	gll2421	-	hypothetical protein
2422	 61.54	0	2580908..2581375	-	155	37521991	-	gll2422	-	hypothetical protein
2423	 61.72	0	2581437..2581820	-	127	37521992	-	gll2423	-	hypothetical protein
2424	 64.44	0	2582082..2582981	-	299	37521993	-	gll2424	-	5'-methylthioadenosine phosphorylase
2425	 62.30	0	2583578..2583943	+	121	37521994	-	glr2425	-	hypothetical protein
2426	 59.44	0	2584009..2584257	-	82	37521995	-	gsl2426	-	hypothetical protein
2427	 62.37	0	2584338..2586989	-	883	37521996	-	gll2427	-	hypothetical protein
2428	 66.67	0	2586989..2587351	-	120	37521997	-	gll2428	-	hypothetical protein
2429	 56.59	-1	2587764..2588180	-	138	37521998	-	gll2429	-	hypothetical protein
2430	 56.50	-1	2588177..2588422	-	81	37521999	-	gsl2430	-	hypothetical protein
2431	 65.22	0	2588609..2588884	+	91	37522000	-	gsr2431	-	hypothetical protein
2432	 54.68	-1	2588889..2589305	+	138	37522001	-	glr2432	-	hypothetical protein
2433	 63.83	0	2589477..2590286	+	269	37522002	-	glr2433	-	type 4 prepilin peptidase
2434	 66.18	0	2590309..2591340	+	343	37522003	-	glr2434	-	hypothetical protein
2435	 61.76	0	2591385..2592077	+	230	37522004	-	glr2435	-	hypothetical protein
2436	 64.39	0	2592074..2592733	+	219	37522005	-	glr2436	-	hypothetical protein
2437	 63.82	0	2592752..2593243	+	163	37522006	-	glr2437	-	hypothetical protein
2438	 65.52	0	2593240..2594721	+	493	37522007	-	glr2438	-	hypothetical protein
2439	 62.44	0	2594781..2596247	-	488	37522008	-	gll2439	-	hypothetical protein
2440	 63.85	0	2596344..2596769	-	141	37522009	-	gll2440	-	hypothetical protein
2441	 66.51	0	2596839..2598119	+	426	37522010	-	glr2441	-	competence-damage inducible protein CinA-like protein
2442	 63.77	0	2598254..2598736	+	160	37522011	aroQ	gvip339	-	3-dehydroquinate dehydratase
2443	 64.40	0	2598770..2599873	+	367	37522012	-	glr2443	-	L-sorbosone dehydrogenase
2444	 66.17	0	2599945..2601540	-	531	37522013	-	gll2444	-	hypothetical protein
2445	 53.10	-1	2601730..2601987	-	85	37522014	-	gsl2445	-	hypothetical protein
2446	 64.37	0	2602508..2603815	+	435	37522015	-	glr2446	-	hypothetical protein
2447	 62.34	0	2603992..2604684	+	230	37522016	-	glr2447	-	hypothetical protein
2448	 68.78	+1	2604802..2605746	+	314	37522017	cobD	gvip340	-	cobalamin biosynthetic protein
2449	 64.16	0	2605739..2606017	+	92	37522018	-	gsr2449	-	hypothetical protein
2450	 65.19	0	2605990..2607003	+	337	37522019	-	glr2450	-	hypothetical protein
2451	 64.83	0	2607000..2607869	+	289	37522020	-	glr2451	-	integrase/recombinase
2452	 65.20	0	2607896..2609257	+	453	37522021	trmE	glr2452	-	tRNA modification GTPase TrmE
2453	 64.13	0	2609273..2610022	-	249	37522022	-	gll2453	-	hypothetical protein
2454	 66.29	0	2610237..2611292	-	351	37522023	-	gll2454	-	cation efflux system membrane protein
2455	 66.28	0	2611469..2612770	-	433	37522024	-	gll2455	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.