IslandPathversion 1.0

IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.08 STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2320	 64.59	0	2484328..2485485	-	385	37521889	-	gll2320	-	small subunit of soluble hydrogenase
2321	 58.27	0	2485617..2486390	+	257	37521890	thyX	glr2321	-	FAD-dependent thymidylate synthase
2322	 57.06	-1	2486614..2487696	+	360	37521891	psbA	gvip317	-	photosystem II protein D1
2323	 59.70	0	2487828..2488889	+	353	37521892	psbD	gvip318	-	photosystem II protein D2
2324	 61.61	0	2488873..2490297	+	474	37521893	psbC	gvip319	-	photosystem II CP43 protein
2325	 62.86	0	2490491..2491645	-	384	37521894	-	gll2325	-	ATP-dependent RNA helicase
2326	 63.40	0	2491795..2492100	-	101	37521895	-	gll2326	-	RNA-binding protein
2327	 60.14	0	2492216..2492629	+	137	37521896	-	glr2327	-	hypothetical protein
2328	 59.70	0	2492906..2493106	+	66	37521897	-	gsr2328	-	hypothetical protein
2329	 58.90	0	2493189..2494940	-	583	37521898	-	gll2329	-	HlyB/MsbA family ABC transporter
2330	 65.82	0	2494992..2495819	-	275	37521899	-	gll2330	-	peptidase
2331	 63.36	0	2495818..2496180	+	120	37521900	-	glr2331	-	hypothetical protein
2332	 57.09	-1	2496177..2496458	-	93	37521901	-	gsl2332	-	hypothetical protein
2333	 61.27	0	2496635..2496949	+	104	37521902	-	glr2333	-	hypothetical protein
2334	 61.65	0	2497000..2497776	+	258	37521903	-	glr2334	-	hypothetical protein
2335	 62.40	0	2497813..2498679	-	288	37521904	-	gll2335	-	hypothetical protein
2336	 65.44	0	2498767..2499582	+	271	37521905	-	glr2336	-	hypothetical protein
2337	 62.32	0	2499587..2500138	-	183	37521906	psbV	gvip320	-	cytochrome c-550
2338	 65.27	0	2500172..2500672	-	166	37521907	-	gvip320.1	-	cytochrome c550
2339	 56.22	-1	2500693..2500893	-	66	37521908	-	gsl2339	-	hypothetical protein
2340	 61.44	0	2500995..2501702	-	235	37521909	pyrH	gvip321	-	uridylate kinase
2341	 59.49	0	2501811..2502200	-	129	37521910	petE	gvip322	-	plastocyanin
2342	 63.18	0	2502220..2503884	-	554	37521911	gatB	gll2342	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2343	 60.99	0	2503944..2504612	+	222	37521912	-	glr2343	-	hypothetical protein
2344	 50.21	-2	2504637..2505365	+	242	37521913	-	glr2344	-	hypothetical protein
2345	 63.21	0	2505459..2506124	+	221	37521914	-	glr2345	-	hypothetical protein
2346	 61.26	0	2506200..2507087	-	295	37521915	-	gll2346	-	hypothetical protein
2347	 63.32	0	2507209..2507775	+	188	37521916	-	glr2347	-	hypothetical protein
2348	 63.72	0	2507772..2510387	-	871	37521917	alaS	gvip323	-	alanyl-tRNA synthetase
2349	 67.33	+1	2510472..2511821	-	449	37521918	-	gll2349	-	alanyl-tRNA synthetase
2350	 66.52	0	2511950..2513320	-	456	37521919	-	gll2350	-	amino acid transporter
2351	 61.01	0	2513367..2513843	-	158	37521920	ycf52	gvip324	-	hypothetical protein
2352	 65.11	0	2513930..2515084	-	384	37521921	-	gll2352	-	glycosyltransferase
2353	 62.41	0	2515233..2516336	+	367	37521922	-	glr2353	-	periplasmic amino acid-binding protein
2354	 61.01	0	2516346..2516504	+	52	37521923	-	gsr2354	-	hypothetical protein
2355	 67.73	+1	2516538..2517386	+	282	37521924	-	glr2355	-	oxidoreductase
2356	 64.12	0	2517406..2517915	-	169	37521925	-	gll2356	-	hypothetical protein
2357	 57.14	-1	2517982..2518317	-	111	37521926	-	gll2357	-	hypothetical protein
2358	 61.20	0	2518527..2519897	+	456	37521927	-	glr2358	-	L-serine dehydratase
2359	 66.67	0	2519931..2521460	+	509	37521928	ggt	gvip325	-	gamma-glutamyltranspeptidase
2360	 52.61	-1	2521713..2522018	-	101	37521929	-	gll2360	-	hypothetical protein
2361	 63.44	0	2522040..2523713	-	557	37521930	-	gll2361	-	hypothetical protein
2362	 64.06	0	2524335..2525522	-	395	37521931	thrC	gvip326	-	threonine synthase
2363	 62.23	0	2525606..2526214	+	202	37521932	-	glr2363	-	hypothetical protein
2364	 64.16	0	2526348..2526785	-	145	37521933	-	gll2364	-	hypothetical protein
2365	 63.11	0	2526892..2527200	+	102	37521934	-	glr2365	-	hypothetical protein
2366	 61.68	0	2527212..2527592	+	126	37521935	-	glr2366	-	hypothetical protein
2367	 65.03	0	2527589..2528380	-	263	37521936	-	gll2367	-	deoxyribonuclease
2368	 57.64	0	2528496..2529038	+	180	37521937	-	glr2368	-	hypothetical protein
2369	 60.35	0	2529093..2530502	-	469	37521938	chlN	gvip327	-	light-independent protochlorophyllide reductase subunit N
2370	 58.82	0	2530524..2531351	-	275	37521939	chlL	gvip328	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
2371	 60.22	0	2531485..2531856	+	123	37521940	-	glr2371	-	hypothetical protein
2372	 61.51	0	2531908..2533089	+	393	37521941	ndhH	gvip329	-	NAD(P)H-quinone oxidoreductase subunit H
2373	 68.12	+1	2533086..2533430	-	114	37521942	-	gll2373	-	hypothetical protein
2374	 64.73	0	2533424..2534353	-	309	37521943	-	gll2374	-	hypothetical protein
2375	 61.64	0	2534471..2534908	+	145	37521944	-	glr2375	-	bacterioferritin comigratory protein
2376	 64.17	0	2534912..2535391	+	159	37521945	-	glr2376	-	bacterioferritin comigratory protein
2377	 64.68	0	2535597..2536352	+	251	37521946	-	glr2377	-	D,D-carboxypeptidase
2378	 63.78	0	2536374..2537966	-	530	37521947	gltX	gvip330	-	glutamyl-tRNA synthetase
2379	 64.00	0	2538114..2538863	+	249	37521948	ndhK	gvip331	-	NADH dehydrogenase subunit B
2380	 62.78	0	2538835..2539374	+	179	37521949	ndhJ	gvip332	-	NADH dehydrogenase subunit J
2381	 54.92	-1	2539747..2540010	+	87	37521950	-	gsr2381	-	hypothetical protein
2382	 57.78	0	2540013..2540462	+	149	37521951	-	glr2382	-	plasmid stability protein StbB-like protein
2383	 58.90	0	2540605..2541789	-	394	37521952	ndhH	gvip333	-	NAD(P)H-quinone oxidoreductase subunit H
2384	 65.58	0	2541850..2543040	-	396	37521953	-	gll2384	-	hypothetical protein
2385	 59.11	0	2543086..2543601	+	171	37521954	-	glr2385	-	acetyltransferase
2386	 64.63	0	2543711..2544841	+	376	37521955	-	glr2386	-	sporulation protein SpoIID-like protein
2387	 64.67	0	2544745..2545998	+	417	37521956	-	glr2387	-	hypothetical protein
2388	 62.89	0	2546119..2548368	+	749	37521957	-	glr2388	-	Na/H antiporter
2389	 58.33	0	2548433..2550784	+	783	37521958	-	glr2389	-	hypothetical protein
2390	 67.68	+1	2550809..2551987	+	392	37521959	hisZ	gvip334	-	ATP phosphoribosyltransferase regulatory subunit
2391	 60.13	0	2552069..2553292	+	407	37521960	-	glr2391	-	hypothetical protein
2392	 62.22	0	2553475..2554464	+	329	37521961	-	glr2392	-	hypothetical protein
2393	 54.68	-1	2554474..2554815	-	113	37521962	-	gll2393	-	hypothetical protein
2394	 63.73	0	2554866..2557247	+	793	37521963	-	glr2394	-	ATP-dependent DNA helicase
2395	 56.96	-1	2557294..2557530	+	78	37521964	-	gsr2395	-	hypothetical protein
2396	 56.16	-1	2557514..2557846	+	110	37521965	-	glr2396	-	hypothetical protein
2397	 64.77	0	2557915..2558601	+	228	37521966	-	glr2397	-	heat shock protein DnaJ
2398	 67.70	+1	2558608..2559960	+	450	37521967	murF	gvip335	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase
2399	 63.84	0	2559986..2561011	+	341	37521968	-	glr2399	-	hypothetical protein
2400	 67.81	+1	2561008..2561358	-	116	37521969	-	gll2400	-	hypothetical protein
2401	 62.86	0	2561369..2561473	-	34	37521970	psaM	gvip336	-	photosystem I subunit XII
2402	 61.79	0	2561704..2562339	+	211	37521971	-	glr2402	-	MotA/TolQ/ExbB family proton channel protein
2403	 58.39	0	2562336..2562758	+	140	37521972	-	glr2403	-	biopolymer transport ExbD protein
2404	 65.50	0	2562721..2563491	+	256	37521973	-	glr2404	-	hypothetical protein
2405	 64.01	0	2563502..2564629	-	375	37521974	recF	gvip337	-	recombination protein F
2406	 66.67	0	2564897..2566339	+	480	37521975	radA	gvip338	-	DNA repair protein RadA
2407	 62.30	0	2566405..2566839	+	144	37521976	-	glr2407	-	photomixotrophic growth related protein, PmgA-like protein
2408	 61.59	0	2566872..2567561	+	229	37521977	-	glr2408	-	DNA polymerase related protein
2409	 65.70	0	2567565..2568182	+	205	37521978	-	glr2409	-	pyrrolidone-carboxylate peptidase
2410	 56.08	-1	2568162..2568737	-	191	37521979	-	gll2410	-	hypothetical protein
2411	 63.05	0	2568761..2569534	-	257	37521980	-	gll2411	-	methionine aminopeptidase
2412	 63.51	0	2569597..2571210	-	537	37521981	-	gll2412	-	hypothetical protein
2413	 50.57	-2	2571281..2571628	+	115	37521982	-	glr2413	-	hypothetical protein
2414	 52.63	-1	2571673..2571843	-	56	37521983	-	gsl2414	-	hypothetical protein
2415	 61.33	0	2571847..2572857	+	336	37521984	-	glr2415	-	hypothetical protein
2416	 64.18	0	2572897..2573418	+	173	37521985	-	glr2416	-	aminoglycoside N6'-acetyltransferase
2417	 64.29	0	2573504..2574343	-	279	37521986	-	gll2417	-	hypothetical protein
2418	 63.89	0	2574356..2577520	-	1054	37521987	-	gll2418	-	helicase
2419	 63.77	0	2577590..2578729	-	379	37521988	-	gll2419	-	hypothetical protein
62.08	MEAN

4.75	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.