IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2290	 64.81	0	2452977..2454593	-	538	37521859	leuA	gvip311	-	2-isopropylmalate synthase
2291	 61.82	0	2454685..2455881	-	398	37521860	-	gll2291	-	hypothetical protein
2292	 47.39	-2	2456080..2456520	-	146	37521861	-	gll2292	-	hypothetical protein
2293	 46.60	-2	2456513..2456836	-	107	37521862	-	gll2293	-	hypothetical protein
2294	 64.70	0	2456889..2458007	-	372	37521863	-	gll2294	-	hypothetical protein
2295	 60.72	0	2458009..2458899	-	296	37521864	petH	gvip312	-	ferredoxin--NADP+ reductase
2296	 58.84	0	2459272..2460267	+	331	37521865	prk	gvip313	-	phosphoribulokinase
2297	 63.14	0	2460303..2462315	+	670	37521866	-	glr2297	-	transketolase
2298	 61.40	0	2462385..2463428	+	347	37521867	-	glr2298	-	sugar-non-specific nuclease NucA-like protein
2299	 61.47	0	2463510..2463932	-	140	37521868	-	gll2299	-	sugar-non-specific nuclease inhibitor NuiA-like protein
2300	 56.04	-1	2463986..2464399	-	137	37521869	-	gll2300	-	hypothetical protein
2301	 53.70	-1	2464399..2464668	-	89	37521870	-	gsl2301	-	hypothetical protein
2302	 43.80	-2	2465786..2467543	+	585	37521871	-	glr2302	-	hypothetical protein
2303	 41.26	-2	2468037..2468957	+	306	37521872	-	glr2303	-	hypothetical protein
2304	 64.08	0	2469067..2469453	-	128	37521873	-	gll2304	-	hypothetical protein
2305	 64.14	0	2469847..2470875	+	342	37521874	-	glr2305	-	hypothetical protein
2306	 65.69	0	2470872..2471384	-	170	37521875	-	gll2306	-	hypothetical protein
2307	 63.31	0	2471478..2472401	-	307	37521876	-	gll2307	-	hypothetical protein
2308	 66.67	0	2472455..2472865	-	136	37521877	-	gll2308	-	hypothetical protein
2309	 61.44	0	2472869..2474227	-	452	37521878	-	gll2309	-	hypothetical protein
2310	 63.19	0	2474278..2474910	+	210	37521879	-	glr2310	-	hypothetical protein
2311	 54.49	-1	2474947..2475258	+	103	37521880	acp	gvip314	-	acyl carrier protein
2312	 66.89	+1	2475616..2476491	+	291	37521881	-	glr2312	-	hypothetical protein
2313	 62.83	0	2476563..2477786	+	407	37521882	pgk	gvip315	-	phosphoglycerate kinase
2314	 62.95	0	2477860..2479473	+	537	37521883	-	glr2314	-	hypothetical protein
2315	 67.33	+1	2479489..2480397	-	302	37521884	-	gll2315	-	ribokinase
2316	 65.37	0	2480661..2482043	+	460	37521885	murC	gvip316	-	UDP-N-acetylmuramate--L-alanine ligase
2317	 67.34	+1	2482040..2482933	+	297	37521886	-	glr2317	-	UDP-N-acetylenolpyruvylglucosamine reductase
2318	 61.84	0	2482954..2483574	+	206	37521887	-	glr2318	-	hypothetical protein
2319	 61.01	0	2483582..2484235	-	217	37521888	-	gll2319	-	hypothetical protein
2320	 64.59	0	2484328..2485485	-	385	37521889	-	gll2320	-	small subunit of soluble hydrogenase
2321	 58.27	0	2485617..2486390	+	257	37521890	thyX	glr2321	-	FAD-dependent thymidylate synthase
2322	 57.06	-1	2486614..2487696	+	360	37521891	psbA	gvip317	-	photosystem II protein D1
2323	 59.70	0	2487828..2488889	+	353	37521892	psbD	gvip318	-	photosystem II protein D2
2324	 61.61	0	2488873..2490297	+	474	37521893	psbC	gvip319	-	photosystem II CP43 protein
2325	 62.86	0	2490491..2491645	-	384	37521894	-	gll2325	-	ATP-dependent RNA helicase
2326	 63.40	0	2491795..2492100	-	101	37521895	-	gll2326	-	RNA-binding protein
2327	 60.14	0	2492216..2492629	+	137	37521896	-	glr2327	-	hypothetical protein
2328	 59.70	0	2492906..2493106	+	66	37521897	-	gsr2328	-	hypothetical protein
2329	 58.90	0	2493189..2494940	-	583	37521898	-	gll2329	-	HlyB/MsbA family ABC transporter
2330	 65.82	0	2494992..2495819	-	275	37521899	-	gll2330	-	peptidase
2331	 63.36	0	2495818..2496180	+	120	37521900	-	glr2331	-	hypothetical protein
2332	 57.09	-1	2496177..2496458	-	93	37521901	-	gsl2332	-	hypothetical protein
2333	 61.27	0	2496635..2496949	+	104	37521902	-	glr2333	-	hypothetical protein
2334	 61.65	0	2497000..2497776	+	258	37521903	-	glr2334	-	hypothetical protein
2335	 62.40	0	2497813..2498679	-	288	37521904	-	gll2335	-	hypothetical protein
2336	 65.44	0	2498767..2499582	+	271	37521905	-	glr2336	-	hypothetical protein
2337	 62.32	0	2499587..2500138	-	183	37521906	psbV	gvip320	-	cytochrome c-550
2338	 65.27	0	2500172..2500672	-	166	37521907	-	gvip320.1	-	cytochrome c550
2339	 56.22	-1	2500693..2500893	-	66	37521908	-	gsl2339	-	hypothetical protein
2340	 61.44	0	2500995..2501702	-	235	37521909	pyrH	gvip321	-	uridylate kinase
2341	 59.49	0	2501811..2502200	-	129	37521910	petE	gvip322	-	plastocyanin
2342	 63.18	0	2502220..2503884	-	554	37521911	gatB	gll2342	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2343	 60.99	0	2503944..2504612	+	222	37521912	-	glr2343	-	hypothetical protein
2344	 50.21	-2	2504637..2505365	+	242	37521913	-	glr2344	-	hypothetical protein
2345	 63.21	0	2505459..2506124	+	221	37521914	-	glr2345	-	hypothetical protein
2346	 61.26	0	2506200..2507087	-	295	37521915	-	gll2346	-	hypothetical protein
2347	 63.32	0	2507209..2507775	+	188	37521916	-	glr2347	-	hypothetical protein
2348	 63.72	0	2507772..2510387	-	871	37521917	alaS	gvip323	-	alanyl-tRNA synthetase
2349	 67.33	+1	2510472..2511821	-	449	37521918	-	gll2349	-	alanyl-tRNA synthetase
2350	 66.52	0	2511950..2513320	-	456	37521919	-	gll2350	-	amino acid transporter
2351	 61.01	0	2513367..2513843	-	158	37521920	ycf52	gvip324	-	hypothetical protein
2352	 65.11	0	2513930..2515084	-	384	37521921	-	gll2352	-	glycosyltransferase
2353	 62.41	0	2515233..2516336	+	367	37521922	-	glr2353	-	periplasmic amino acid-binding protein
2354	 61.01	0	2516346..2516504	+	52	37521923	-	gsr2354	-	hypothetical protein
2355	 67.73	+1	2516538..2517386	+	282	37521924	-	glr2355	-	oxidoreductase
2356	 64.12	0	2517406..2517915	-	169	37521925	-	gll2356	-	hypothetical protein
2357	 57.14	-1	2517982..2518317	-	111	37521926	-	gll2357	-	hypothetical protein
2358	 61.20	0	2518527..2519897	+	456	37521927	-	glr2358	-	L-serine dehydratase
2359	 66.67	0	2519931..2521460	+	509	37521928	ggt	gvip325	-	gamma-glutamyltranspeptidase
2360	 52.61	-1	2521713..2522018	-	101	37521929	-	gll2360	-	hypothetical protein
2361	 63.44	0	2522040..2523713	-	557	37521930	-	gll2361	-	hypothetical protein
2362	 64.06	0	2524335..2525522	-	395	37521931	thrC	gvip326	-	threonine synthase
2363	 62.23	0	2525606..2526214	+	202	37521932	-	glr2363	-	hypothetical protein
2364	 64.16	0	2526348..2526785	-	145	37521933	-	gll2364	-	hypothetical protein
2365	 63.11	0	2526892..2527200	+	102	37521934	-	glr2365	-	hypothetical protein
2366	 61.68	0	2527212..2527592	+	126	37521935	-	glr2366	-	hypothetical protein
2367	 65.03	0	2527589..2528380	-	263	37521936	-	gll2367	-	deoxyribonuclease
2368	 57.64	0	2528496..2529038	+	180	37521937	-	glr2368	-	hypothetical protein
2369	 60.35	0	2529093..2530502	-	469	37521938	chlN	gvip327	-	light-independent protochlorophyllide reductase subunit N
2370	 58.82	0	2530524..2531351	-	275	37521939	chlL	gvip328	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
2371	 60.22	0	2531485..2531856	+	123	37521940	-	glr2371	-	hypothetical protein
2372	 61.51	0	2531908..2533089	+	393	37521941	ndhH	gvip329	-	NAD(P)H-quinone oxidoreductase subunit H
2373	 68.12	+1	2533086..2533430	-	114	37521942	-	gll2373	-	hypothetical protein
2374	 64.73	0	2533424..2534353	-	309	37521943	-	gll2374	-	hypothetical protein
2375	 61.64	0	2534471..2534908	+	145	37521944	-	glr2375	-	bacterioferritin comigratory protein
2376	 64.17	0	2534912..2535391	+	159	37521945	-	glr2376	-	bacterioferritin comigratory protein
2377	 64.68	0	2535597..2536352	+	251	37521946	-	glr2377	-	D,D-carboxypeptidase
2378	 63.78	0	2536374..2537966	-	530	37521947	gltX	gvip330	-	glutamyl-tRNA synthetase
2379	 64.00	0	2538114..2538863	+	249	37521948	ndhK	gvip331	-	NADH dehydrogenase subunit B
2380	 62.78	0	2538835..2539374	+	179	37521949	ndhJ	gvip332	-	NADH dehydrogenase subunit J
2381	 54.92	-1	2539747..2540010	+	87	37521950	-	gsr2381	-	hypothetical protein
2382	 57.78	0	2540013..2540462	+	149	37521951	-	glr2382	-	plasmid stability protein StbB-like protein
2383	 58.90	0	2540605..2541789	-	394	37521952	ndhH	gvip333	-	NAD(P)H-quinone oxidoreductase subunit H
2384	 65.58	0	2541850..2543040	-	396	37521953	-	gll2384	-	hypothetical protein
2385	 59.11	0	2543086..2543601	+	171	37521954	-	glr2385	-	acetyltransferase
2386	 64.63	0	2543711..2544841	+	376	37521955	-	glr2386	-	sporulation protein SpoIID-like protein
2387	 64.67	0	2544745..2545998	+	417	37521956	-	glr2387	-	hypothetical protein
2388	 62.89	0	2546119..2548368	+	749	37521957	-	glr2388	-	Na/H antiporter
2389	 58.33	0	2548433..2550784	+	783	37521958	-	glr2389	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.