IslandPath Analysis: Gloeobacter violaceus PCC 7421



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.08   STD DEV: 4.75
Gloeobacter violaceus PCC 7421, complete genome - 1..4659019
4430 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2258	 62.05	0	2419843..2421054	+	403	37521827	-	glr2258	-	two-component sensor histidine kinase
2259	 63.35	0	2421254..2421826	-	190	37521828	-	gll2259	-	hypothetical protein
2260	 65.09	0	2422095..2423108	-	337	37521829	-	gll2260	-	oxidoreductase
2261	 63.67	0	2423295..2425160	+	621	37521830	-	glr2261	-	hypothetical protein
2262	 62.27	0	2425171..2426580	-	469	37521831	-	gll2262	-	peptide transporter
2263	 68.15	+1	2426805..2427548	-	247	37521832	-	gll2263	-	hypothetical protein
2264	 65.02	0	2427638..2429518	-	626	37521833	-	gll2264	-	HlyB/MsbA family ABC transporter
2265	 60.28	0	2429853..2430212	-	119	37521834	-	gll2265	-	hypothetical protein
2266	 62.14	0	2430302..2433328	+	1008	37521835	-	glr2266	-	helicase
2267	 63.27	0	2433325..2434149	+	274	37521836	-	glr2267	-	hypothetical protein
2268	 56.58	-1	2434341..2435252	+	303	37521837	-	glr2268	-	hypothetical protein
2269	 56.47	-1	2435266..2435922	-	218	37521838	-	gll2269	-	hypothetical protein
2270	 55.83	-1	2435940..2436179	-	79	37521839	-	gsl2270	-	hypothetical protein
2271	 63.80	0	2436258..2437340	-	360	37521840	hrcA	gll2271	-	heat-inducible transcription repressor
2272	 61.87	0	2437471..2437887	+	138	37521841	-	glr2272	-	two-component response regulator
2273	 59.56	0	2437869..2438093	+	74	37521842	-	gsr2273	-	hypothetical protein
2274	 63.26	0	2438065..2438769	+	234	37521843	-	glr2274	-	two-component response regulator
2275	 65.97	0	2438791..2439939	+	382	37521844	-	glr2275	-	hypothetical protein
2276	 63.64	0	2440032..2440526	+	164	37521845	petE	gvip308	-	plastocyanin
2277	 53.24	-1	2440606..2440821	+	71	37521846	-	gsr2277	-	hypothetical protein
2278	 59.83	0	2440818..2441051	+	77	37521847	-	gsr2278	-	hypothetical protein
2279	 55.82	-1	2441183..2442058	+	291	37521848	-	glr2279	-	hypothetical protein
2280	 62.47	0	2442188..2442949	+	253	37521849	-	glr2280	-	ABC transporter ATP-binding protein
2281	 64.50	0	2443003..2443923	+	306	37521850	hslO	gvip309	-	Hsp33-like chaperonin
2282	 59.85	0	2443972..2445027	-	351	37521851	-	gll2282	-	hypothetical protein
2283	 63.01	0	2445180..2448518	+	1112	37521852	rpoB	gvip310	-	DNA-directed RNA polymerase subunit beta
2284	 61.50	0	2448588..2450330	-	580	37521853	-	gll2284	-	hypothetical protein
2285	 54.32	-1	2450671..2450832	+	53	37521854	-	gsr2285	-	hypothetical protein
2286	 65.98	0	2451325..2451615	-	96	37521855	-	gsl2286	-	hypothetical protein
2287	 62.39	0	2451804..2452037	+	77	37521856	-	gsr2287	-	hypothetical protein
2288	 59.72	0	2452024..2452383	+	119	37521857	-	glr2288	-	hypothetical protein
2289	 66.49	0	2452414..2452977	-	187	37521858	-	gll2289	-	dioxygenase
2290	 64.81	0	2452977..2454593	-	538	37521859	leuA	gvip311	-	2-isopropylmalate synthase
2291	 61.82	0	2454685..2455881	-	398	37521860	-	gll2291	-	hypothetical protein
2292	 47.39	-2	2456080..2456520	-	146	37521861	-	gll2292	-	hypothetical protein
2293	 46.60	-2	2456513..2456836	-	107	37521862	-	gll2293	-	hypothetical protein
2294	 64.70	0	2456889..2458007	-	372	37521863	-	gll2294	-	hypothetical protein
2295	 60.72	0	2458009..2458899	-	296	37521864	petH	gvip312	-	ferredoxin--NADP+ reductase
2296	 58.84	0	2459272..2460267	+	331	37521865	prk	gvip313	-	phosphoribulokinase
2297	 63.14	0	2460303..2462315	+	670	37521866	-	glr2297	-	transketolase
2298	 61.40	0	2462385..2463428	+	347	37521867	-	glr2298	-	sugar-non-specific nuclease NucA-like protein
2299	 61.47	0	2463510..2463932	-	140	37521868	-	gll2299	-	sugar-non-specific nuclease inhibitor NuiA-like protein
2300	 56.04	-1	2463986..2464399	-	137	37521869	-	gll2300	-	hypothetical protein
2301	 53.70	-1	2464399..2464668	-	89	37521870	-	gsl2301	-	hypothetical protein
2302	 43.80	-2	2465786..2467543	+	585	37521871	-	glr2302	-	hypothetical protein
2303	 41.26	-2	2468037..2468957	+	306	37521872	-	glr2303	-	hypothetical protein
2304	 64.08	0	2469067..2469453	-	128	37521873	-	gll2304	-	hypothetical protein
2305	 64.14	0	2469847..2470875	+	342	37521874	-	glr2305	-	hypothetical protein
2306	 65.69	0	2470872..2471384	-	170	37521875	-	gll2306	-	hypothetical protein
2307	 63.31	0	2471478..2472401	-	307	37521876	-	gll2307	-	hypothetical protein
2308	 66.67	0	2472455..2472865	-	136	37521877	-	gll2308	-	hypothetical protein
2309	 61.44	0	2472869..2474227	-	452	37521878	-	gll2309	-	hypothetical protein
2310	 63.19	0	2474278..2474910	+	210	37521879	-	glr2310	-	hypothetical protein
2311	 54.49	-1	2474947..2475258	+	103	37521880	acp	gvip314	-	acyl carrier protein
2312	 66.89	+1	2475616..2476491	+	291	37521881	-	glr2312	-	hypothetical protein
2313	 62.83	0	2476563..2477786	+	407	37521882	pgk	gvip315	-	phosphoglycerate kinase
2314	 62.95	0	2477860..2479473	+	537	37521883	-	glr2314	-	hypothetical protein
2315	 67.33	+1	2479489..2480397	-	302	37521884	-	gll2315	-	ribokinase
2316	 65.37	0	2480661..2482043	+	460	37521885	murC	gvip316	-	UDP-N-acetylmuramate--L-alanine ligase
2317	 67.34	+1	2482040..2482933	+	297	37521886	-	glr2317	-	UDP-N-acetylenolpyruvylglucosamine reductase
2318	 61.84	0	2482954..2483574	+	206	37521887	-	glr2318	-	hypothetical protein
2319	 61.01	0	2483582..2484235	-	217	37521888	-	gll2319	-	hypothetical protein
2320	 64.59	0	2484328..2485485	-	385	37521889	-	gll2320	-	small subunit of soluble hydrogenase
2321	 58.27	0	2485617..2486390	+	257	37521890	thyX	glr2321	-	FAD-dependent thymidylate synthase
2322	 57.06	-1	2486614..2487696	+	360	37521891	psbA	gvip317	-	photosystem II protein D1
2323	 59.70	0	2487828..2488889	+	353	37521892	psbD	gvip318	-	photosystem II protein D2
2324	 61.61	0	2488873..2490297	+	474	37521893	psbC	gvip319	-	photosystem II CP43 protein
2325	 62.86	0	2490491..2491645	-	384	37521894	-	gll2325	-	ATP-dependent RNA helicase
2326	 63.40	0	2491795..2492100	-	101	37521895	-	gll2326	-	RNA-binding protein
2327	 60.14	0	2492216..2492629	+	137	37521896	-	glr2327	-	hypothetical protein
2328	 59.70	0	2492906..2493106	+	66	37521897	-	gsr2328	-	hypothetical protein
2329	 58.90	0	2493189..2494940	-	583	37521898	-	gll2329	-	HlyB/MsbA family ABC transporter
2330	 65.82	0	2494992..2495819	-	275	37521899	-	gll2330	-	peptidase
2331	 63.36	0	2495818..2496180	+	120	37521900	-	glr2331	-	hypothetical protein
2332	 57.09	-1	2496177..2496458	-	93	37521901	-	gsl2332	-	hypothetical protein
2333	 61.27	0	2496635..2496949	+	104	37521902	-	glr2333	-	hypothetical protein
2334	 61.65	0	2497000..2497776	+	258	37521903	-	glr2334	-	hypothetical protein
2335	 62.40	0	2497813..2498679	-	288	37521904	-	gll2335	-	hypothetical protein
2336	 65.44	0	2498767..2499582	+	271	37521905	-	glr2336	-	hypothetical protein
2337	 62.32	0	2499587..2500138	-	183	37521906	psbV	gvip320	-	cytochrome c-550
2338	 65.27	0	2500172..2500672	-	166	37521907	-	gvip320.1	-	cytochrome c550
2339	 56.22	-1	2500693..2500893	-	66	37521908	-	gsl2339	-	hypothetical protein
2340	 61.44	0	2500995..2501702	-	235	37521909	pyrH	gvip321	-	uridylate kinase
2341	 59.49	0	2501811..2502200	-	129	37521910	petE	gvip322	-	plastocyanin
2342	 63.18	0	2502220..2503884	-	554	37521911	gatB	gll2342	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
2343	 60.99	0	2503944..2504612	+	222	37521912	-	glr2343	-	hypothetical protein
2344	 50.21	-2	2504637..2505365	+	242	37521913	-	glr2344	-	hypothetical protein
2345	 63.21	0	2505459..2506124	+	221	37521914	-	glr2345	-	hypothetical protein
2346	 61.26	0	2506200..2507087	-	295	37521915	-	gll2346	-	hypothetical protein
2347	 63.32	0	2507209..2507775	+	188	37521916	-	glr2347	-	hypothetical protein
2348	 63.72	0	2507772..2510387	-	871	37521917	alaS	gvip323	-	alanyl-tRNA synthetase
2349	 67.33	+1	2510472..2511821	-	449	37521918	-	gll2349	-	alanyl-tRNA synthetase
2350	 66.52	0	2511950..2513320	-	456	37521919	-	gll2350	-	amino acid transporter
2351	 61.01	0	2513367..2513843	-	158	37521920	ycf52	gvip324	-	hypothetical protein
2352	 65.11	0	2513930..2515084	-	384	37521921	-	gll2352	-	glycosyltransferase
2353	 62.41	0	2515233..2516336	+	367	37521922	-	glr2353	-	periplasmic amino acid-binding protein
2354	 61.01	0	2516346..2516504	+	52	37521923	-	gsr2354	-	hypothetical protein
2355	 67.73	+1	2516538..2517386	+	282	37521924	-	glr2355	-	oxidoreductase
2356	 64.12	0	2517406..2517915	-	169	37521925	-	gll2356	-	hypothetical protein
2357	 57.14	-1	2517982..2518317	-	111	37521926	-	gll2357	-	hypothetical protein
62.08	MEAN

4.75	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.